Hydrogen

coagulation factor II, thrombin ; Homo sapiens







63 Article(s)
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1 34978431 How Thrombomodulin Enables W215A/E217A Thrombin to Cleave Protein C but Not Fibrinogen. 2022 Jan 18 2
2 35260173 A novel insight into mechanism of derangement of coagulation balance: interactions of quantum dots with coagulation-related proteins. 2022 Mar 8 1
3 33925363 Proton Bridging in Catalysis by and Inhibition of Serine Proteases of the Blood Cascade System. 2021 Apr 27 1
4 34159782 Hydrogen/Deuterium Exchange and Nuclear Magnetic Resonance Spectroscopy Reveal Dynamic Allostery on Multiple Time Scales in the Serine Protease Thrombin. 2021 Nov 23 2
5 31743711 Mechanism and inhibition kinetics of peptide P13 as thrombin inhibitor. 2020 May 1 1
6 32450796 Probing contacts of inhibitor locked in transition states in the catalytic triad of DENV2 type serine protease and its mutants by 1H, 19F and 15 N NMR spectroscopy. 2020 May 25 2
7 29471734 Probing light chain mutation effects on thrombin via molecular dynamics simulations and machine learning. 2019 Mar 4
8 30884308 Synthesis of CC, CN coupled novel substituted dibutyl benzothiazepinone derivatives and evaluation of their thrombin inhibitory activity. 2019 Jun 1
9 31086923 Fluorine-substituted quinoidal thiophene with a F-H hydrogen bond locked conformation for high-performance n-channel organic transistors. 2019 May 28 1
10 29382582 Structure-function studies of prothrombin Amrita, a dysfunctional prothrombin characterized by point mutation at Arg553 → Gln. 2018 Apr 15 1
11 29406112 Inhibition of thrombin by functionalized C60 nanoparticles revealed via in vitro assays and in silico studies. 2018 Jan 1
12 29634247 Dynamic Consequences of Mutation of Tryptophan 215 in Thrombin. 2018 May 8 1
13 29973622 Direct evidence of a low barrier hydrogen bond in the catalytic triad of a Serine protease. 2018 Jul 4 1
14 27816890 Modulating hydrogen-bond basicity within the context of protein-ligand binding: A case study with thrombin inhibitors that reveals a dominating role for desolvation. 2017 Jan 5 1
15 28371253 Charges Shift Protonation: Neutron Diffraction Reveals that Aniline and 2-Aminopyridine Become Protonated Upon Binding to Trypsin. 2017 Apr 18 1
16 27248478 Elucidation of Nonadditive Effects in Protein-Ligand Binding Energies: Thrombin as a Case Study. 2016 Jun 23 1
17 27507430 Large-scale molecular dynamics simulation: Effect of polarization on thrombin-ligand binding energy. 2016 Aug 10 2
18 27771530 Thrombin and protein C pathway in peripheral nerve Schwann cells. 2016 Dec 17 1
19 27777004 Identification of the minimum PAR4 inhibitor pharmacophore and optimization of a series of 2-methoxy-6-arylimidazo[2,1-b][1,3,4]thiadiazoles. 2016 Nov 15 1
20 27874042 Electrical Stimulus Controlled Binding/Unbinding of Human Thrombin-Aptamer Complex. 2016 Nov 22 1
21 26634958 Dewetting of S1-Pocket via Water Channel upon Thrombin-Substrate Association Reaction. 2015 Dec 31 3
22 23517305 Proton bridging in the interactions of thrombin with hirudin and its mimics. 2013 Apr 9 1
23 21635208 Exploring QSARs for inhibitory effect of a set of heterocyclic thrombin inhibitors by multilinear regression refined by artificial neural network and molecular docking simulations. 2012 Apr 1
24 23152789 On the specificity of heparin/heparan sulfate binding to proteins. Anion-binding sites on antithrombin and thrombin are fundamentally different. 2012 1
25 21736375 Interaction of thrombin with sucrose octasulfate. 2011 Aug 16 1
26 21970497 Interaction between resveratrol and thrombin and its biological implication. 2011 Dec 1
27 20148533 Enhancement of hydrophobic interactions and hydrogen bond strength by cooperativity: synthesis, modeling, and molecular dynamics simulations of a congeneric series of thrombin inhibitors. 2010 Mar 11 2
28 20156458 Non-additivity of functional group contributions in protein-ligand binding: a comprehensive study by crystallography and isothermal titration calorimetry. 2010 Apr 9 2
29 17950494 Structure of a novel thrombin inhibitor with an uncharged D-amino acid as P1 residue. 2008 Jun 4
30 16411898 Probing the importance of hydrogen bonds in the active site of the subtilisin nattokinase by site-directed mutagenesis and molecular dynamics simulation. 2006 May 1 1
31 17034250 Dielectric studies of water clusters in cyclodextrins: Relevance to the transition between slow and fast forms of thrombin. 2006 Oct 19 1
32 15617822 NMR study of the folding-unfolding mechanism for the thrombin-binding DNA aptamer d(GGTTGGTGTGGTTGG). 2005 Feb 1 1
33 15731882 Noncovalent inhibition of the serine proteases, alpha-chymotrypsin and trypsin by trifluoro(organo)borates. 2005 Mar 7 1
34 15771442 In-depth study of tripeptide-based alpha-ketoheterocycles as inhibitors of thrombin. Effective utilization of the S1' subsite and its implications to structure-based drug design. 2005 Mar 24 3
35 15122890 Allosteric changes in solvent accessibility observed in thrombin upon active site occupation. 2004 May 11 1
36 12742021 Elaborate manifold of short hydrogen bond arrays mediating binding of active site-directed serine protease inhibitors. 2003 May 23 1
37 12021429 Epitope mapping of a monoclonal antibody against human thrombin by H/D-exchange mass spectrometry reveals selection of a diverse sequence in a highly conserved protein. 2002 Jun 1
38 11178915 Solvent accessibility of the thrombin-thrombomodulin interface. 2001 Feb 23 1
39 11292354 A novel serine protease inhibition motif involving a multi-centered short hydrogen bonding network at the active site. 2001 Apr 13 5
40 11495587 Development of serine protease inhibitors displaying a multicentered short (<2.3 A) hydrogen bond binding mode: inhibitors of urokinase-type plasminogen activator and factor Xa. 2001 Aug 16 1
41 10987367 New bivalent thrombin inhibitors with N(alpha)(methyl)arginine at the P1-position. 2000 Jul 1
42 10987422 Quantitative structure-intestinal permeability relationship of benzamidine analogue thrombin inhibitor. 2000 Sep 4 1
43 10048334 Breaking the low barrier hydrogen bond in a serine protease. 1999 Feb 1
44 10189177 Small, noncovalent serine protease inhibitors. 1999 Mar 1
45 10632045 Thrombin receptor-activating peptides (TRAPs): investigation of bioactive conformations via structure-activity, spectroscopic, and computational studies. 1999 Nov 1
46 10927404 Anhydrous ammonioguanidinium(2+) and dihydrated bis 1999 Aug 1 1
47 9108691 The molecular environment of the Na+ binding site of thrombin. 1997 Jan 31 2
48 9341205 New inhibitors of thrombin and other trypsin-like proteases: hydrogen bonding of an aromatic cyano group with a backbone amide of the P1 binding site replaces binding of a basic side chain. 1997 Oct 28 1
49 8939759 Enzyme flexibility, solvent and 'weak' interactions characterize thrombin-ligand interactions: implications for drug design. 1996 Nov 15 1
50 7574675 Crystal structure of human alpha-thrombin complexed with hirugen and p-amidinophenylpyruvate at 1.6 A resolution. 1995 Sep 10 1