PMID-sentid	Pub_year	Sent_text	comp_official_name	comp_offset	protein_name	organism	prot_offset
24707321-6	2013	Reverse transcription-polymerase chain reaction using paraffin sections amplified a SYT-SSX1 chimera transcript.	Paraffin	54-62	SSX family member 1	Homo sapiens	88-92
35151264-8	2022	We treated SYT-SSX1 cells with rhTGF-beta1 (a recombinant agent of the TGF-beta1 signaling pathway) and SB431542 and observed morphological changes.	4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide	104-112	SSX family member 1	Homo sapiens	15-19
35151264-13	2022	Through treating SYT-SSX1 and SW982 cells with rhTGF-beta1 and SB431542, we found that TGF-beta1 enhanced the proliferation of cells, induced EMT, and that TGF-beta1 enhanced the characteristics of tumor stem cells.	4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide	63-71	SSX family member 1	Homo sapiens	21-25
21880588-6	2011	We found that SSX2 was expressed most frequently in prostate cell lines, but that SSX1 and SSX5 were also expressed after treatment with the DNA demethylating agent 5-aza-2"-deoxycytidine.	Decitabine	165-187	SSX family member 1	Homo sapiens	82-86
23020131-3	2013	Based on screening results, five unique genes (GNPAT, SUMO1, SPINT2, FLI1, and SSX1) significantly potentiated the growth inhibitory effects of CDDO-Me and induced apoptosis in A375, a BRAF mutated melanoma line (P < 0.001).	bardoxolone methyl	144-151	SSX family member 1	Homo sapiens	79-83
18333330-12	2008	In both cases, reverse transcription-polymerase chain reaction using ribonucleic acid extracted from formalin-fixed, paraffin-embedded tissues detected SYT-SSX 1 fusion gene transcripts, which are characteristic molecular findings of synovial sarcoma.	Formaldehyde	101-109	SSX family member 1	Homo sapiens	156-161
19805961-8	2009	A subsequent molecular analysis performed using reverse transcriptase-polymerase chain reaction with RNA extracted from paraffin-embedded tissue, revealed SYT/SSX1 fusion gene which confirmed the diagnosis of synovial sarcoma.	Paraffin	120-128	SSX family member 1	Homo sapiens	159-163
18720326-7	2008	The positive detection of the SYT-SSX1 fusion transcripts with reverse-transcription polymerase chain reaction in formalin-fixed and paraffin-embedded tissue confirmed the synovial sarcoma diagnosis.	Formaldehyde	114-122	SSX family member 1	Homo sapiens	34-38
18720326-7	2008	The positive detection of the SYT-SSX1 fusion transcripts with reverse-transcription polymerase chain reaction in formalin-fixed and paraffin-embedded tissue confirmed the synovial sarcoma diagnosis.	Paraffin	133-141	SSX family member 1	Homo sapiens	34-38
18333330-12	2008	In both cases, reverse transcription-polymerase chain reaction using ribonucleic acid extracted from formalin-fixed, paraffin-embedded tissues detected SYT-SSX 1 fusion gene transcripts, which are characteristic molecular findings of synovial sarcoma.	Paraffin	117-125	SSX family member 1	Homo sapiens	156-161
12216073-12	2002	SSX1, 2, 4 and 5 mRNA expression can be induced in cell lines by 5-aza-2-deoxycytidine or Trichostatin A.	Decitabine	65-86	SSX family member 1	Homo sapiens	0-16
17471153-4	2007	Digoxigenin-labeled cRNA probes flanking the fusion points of SS18-SSX1 and SS18-SSX2 were generated by in vitro transcription, and hybridized signals were detected by a streptavidin-biotin complex method after chemical enhancement with BT.	Digoxigenin	0-11	SSX family member 1	Homo sapiens	67-71
17101797-7	2007	We then analyzed the gene expression profiles of SYT-SSX1-expressing HeLa cells using oligonucleotide microarrays and found that the SYT-SSX1 fusion protein directly down-regulated the expression of COM1, a regulator of cell proliferation.	Oligonucleotides	86-101	SSX family member 1	Homo sapiens	53-57
15747098-6	2005	Oligonucleotide probes were designed so that the donor probe would span a fusion point and the acceptor probe would be complementary to the SSX1 sequence but have 2 nucleotide mismatches with SSX2 sequence.	Oligonucleotides	0-15	SSX family member 1	Homo sapiens	140-144
12216073-12	2002	SSX1, 2, 4 and 5 mRNA expression can be induced in cell lines by 5-aza-2-deoxycytidine or Trichostatin A.	trichostatin A	90-104	SSX family member 1	Homo sapiens	0-16
11107054-5	2000	In the three cases, a reverse transcription-polymerase chain reaction (RT-PCR) using ribonucleic acid extracted from formalin-fixed, paraffin-embedded tissues detected SYT-SSX1 fusion gene transcripts resulting from translocation t(X;18)(p11.2;q11.2), which is specific for synovial sarcoma.	Formaldehyde	117-125	SSX family member 1	Homo sapiens	172-176
11107054-5	2000	In the three cases, a reverse transcription-polymerase chain reaction (RT-PCR) using ribonucleic acid extracted from formalin-fixed, paraffin-embedded tissues detected SYT-SSX1 fusion gene transcripts resulting from translocation t(X;18)(p11.2;q11.2), which is specific for synovial sarcoma.	Paraffin	133-141	SSX family member 1	Homo sapiens	172-176