PMID-sentid	Pub_year	Sent_text	comp_official_name	comp_offset	protein_name	organism	prot_offset
18242769-0	2008	Differential expression of four Arabidopsis PAL genes; PAL1 and PAL2 have functional specialization in abiotic environmental-triggered flavonoid synthesis.	Flavonoids	135-144	PHE ammonia lyase 1	Arabidopsis thaliana	55-59
18242769-3	2008	Regardless of nitrogen treatments, PAL1 and 2 transcript levels increased at 5 and 10 degrees C. Averaged across all temperatures, nitrogen depletion led to a two-fold increase in PAL1 and PAL2 transcripts.	Nitrogen	131-139	PHE ammonia lyase 1	Arabidopsis thaliana	35-45
18242769-3	2008	Regardless of nitrogen treatments, PAL1 and 2 transcript levels increased at 5 and 10 degrees C. Averaged across all temperatures, nitrogen depletion led to a two-fold increase in PAL1 and PAL2 transcripts.	Nitrogen	131-139	PHE ammonia lyase 1	Arabidopsis thaliana	35-39
18242769-7	2008	PAL1, PAL2 and PAL4 have previously been shown to be related with tissue-specific lignin synthesis, and the present work shows that PAL1 and PAL2 also have functional specialization in abiotic environmental-triggered flavonoid synthesis.	Lignin	82-88	PHE ammonia lyase 1	Arabidopsis thaliana	0-4
26393916-5	2015	The pal1pal2 double mutant (lignin content reduced by 30% compared with WT) also showed the freezing tolerant phenotype, and TCF1 and BCB act upstream of PALs to regulate lignin content.	Lignin	28-34	PHE ammonia lyase 1	Arabidopsis thaliana	4-12
26393916-5	2015	The pal1pal2 double mutant (lignin content reduced by 30% compared with WT) also showed the freezing tolerant phenotype, and TCF1 and BCB act upstream of PALs to regulate lignin content.	Lignin	171-177	PHE ammonia lyase 1	Arabidopsis thaliana	4-12
22249996-6	2012	Furthermore, the committed step of the upstream, general phenylpropanoid pathway, phenylalanine ammonia-lyase (PAL), was down-regulated in its enzyme activity and in the transcription of the flavonol-related PAL1 and PAL2.	phenylpropanoid	57-72	PHE ammonia lyase 1	Arabidopsis thaliana	208-212
22249996-6	2012	Furthermore, the committed step of the upstream, general phenylpropanoid pathway, phenylalanine ammonia-lyase (PAL), was down-regulated in its enzyme activity and in the transcription of the flavonol-related PAL1 and PAL2.	3-hydroxyflavone	191-199	PHE ammonia lyase 1	Arabidopsis thaliana	208-212
20566705-5	2010	The pal1 pal2 double mutants were also deficient in anthocyanin pigments in various plant tissues, which accumulate in wild-type plants under stress conditions.	Anthocyanins	52-63	PHE ammonia lyase 1	Arabidopsis thaliana	4-8
20566705-6	2010	Thus, PAL1 and PAL2 have a redundant role in flavonoid biosynthesis.	Flavonoids	45-54	PHE ammonia lyase 1	Arabidopsis thaliana	6-10
19502745-6	2009	The mRNA levels of exATP inducible genes (AtMAPK3, AtACS6, and AtERF4) and the reactive oxygen species inducible gene (AtPAL1) were increased by hypertonic stresses.	Reactive Oxygen Species	79-102	PHE ammonia lyase 1	Arabidopsis thaliana	119-125
18242769-7	2008	PAL1, PAL2 and PAL4 have previously been shown to be related with tissue-specific lignin synthesis, and the present work shows that PAL1 and PAL2 also have functional specialization in abiotic environmental-triggered flavonoid synthesis.	Lignin	82-88	PHE ammonia lyase 1	Arabidopsis thaliana	132-136
18242769-7	2008	PAL1, PAL2 and PAL4 have previously been shown to be related with tissue-specific lignin synthesis, and the present work shows that PAL1 and PAL2 also have functional specialization in abiotic environmental-triggered flavonoid synthesis.	Flavonoids	217-226	PHE ammonia lyase 1	Arabidopsis thaliana	0-4
18251883-9	2007	Consistent with this hypothesis, rapid, type III secretion system-independent upregulation of the lignin biosynthesis genes, PAL1 and BCB, which might contribute to an early induced, cell wall-based defence mechanism, occurs in response to non-adapted bacteria.	Lignin	98-104	PHE ammonia lyase 1	Arabidopsis thaliana	125-129
18242769-7	2008	PAL1, PAL2 and PAL4 have previously been shown to be related with tissue-specific lignin synthesis, and the present work shows that PAL1 and PAL2 also have functional specialization in abiotic environmental-triggered flavonoid synthesis.	Flavonoids	217-226	PHE ammonia lyase 1	Arabidopsis thaliana	132-136
19015217-7	2008	Moreover, these data provide strong evidence that the Ca2+ influx induced by thaxtomin A is necessary to achieve this cell death and is a prerequisite to early thaxtomin A-induced responses: anion current increase, alkalization of the external medium, and the expression of PAL1 coding for a key enzyme of the phenylpropanoid pathway.	thaxtomine A	77-88	PHE ammonia lyase 1	Arabidopsis thaliana	274-278
19015217-7	2008	Moreover, these data provide strong evidence that the Ca2+ influx induced by thaxtomin A is necessary to achieve this cell death and is a prerequisite to early thaxtomin A-induced responses: anion current increase, alkalization of the external medium, and the expression of PAL1 coding for a key enzyme of the phenylpropanoid pathway.	thaxtomine A	160-171	PHE ammonia lyase 1	Arabidopsis thaliana	274-278
16299170-7	2005	However, the observed phenotypes were correlated with the amount of total shoot anthocyanin at low temperature and with the transcription of the flavonoid pathway genes PAL1 and CHS.	Anthocyanins	80-91	PHE ammonia lyase 1	Arabidopsis thaliana	169-173
17158583-5	2007	Thiamine treatment and subsequent pathogen invasion triggered hydrogen peroxide accumulation, callose induction, and PR1/PAL1 transcription activation in Arabidopsis mutants insensitive to jasmonic acid (jar1), ethylene (etr1), or abscisic acid (abi3-3), but not in plants expressing bacterial NahG and lacking regulation of SAR (npr1 [nonexpressor of PR genes 1]).	Thiamine	0-8	PHE ammonia lyase 1	Arabidopsis thaliana	121-125
16299170-7	2005	However, the observed phenotypes were correlated with the amount of total shoot anthocyanin at low temperature and with the transcription of the flavonoid pathway genes PAL1 and CHS.	Flavonoids	145-154	PHE ammonia lyase 1	Arabidopsis thaliana	169-173
15276452-2	2004	In this study, recombinant native AtPAL1, 2, and 4 were demonstrated to be catalytically competent for l-phenylalanine deamination, whereas AtPAL3, obtained as a N-terminal His-tagged protein, was of very low activity and only detectable at high substrate concentrations.	Phenylalanine	103-118	PHE ammonia lyase 1	Arabidopsis thaliana	34-40
15377757-0	2004	Molecular phenotyping of the pal1 and pal2 mutants of Arabidopsis thaliana reveals far-reaching consequences on phenylpropanoid, amino acid, and carbohydrate metabolism.	phenylpropanoid	112-127	PHE ammonia lyase 1	Arabidopsis thaliana	29-33
15377757-0	2004	Molecular phenotyping of the pal1 and pal2 mutants of Arabidopsis thaliana reveals far-reaching consequences on phenylpropanoid, amino acid, and carbohydrate metabolism.	Carbohydrates	145-157	PHE ammonia lyase 1	Arabidopsis thaliana	29-33
15377757-8	2004	Together, from the molecular phenotype, common and specific functions of PAL1 and PAL2 are delineated, and PAL1 is qualified as being more important for the generation of phenylpropanoids.	phenylpropanoids	171-187	PHE ammonia lyase 1	Arabidopsis thaliana	107-111
15276452-4	2004	AtPAL1, 2 and 4 had similar K(m) values (64-71 microM) for l-Phe, with AtPAL2 apparently being slightly more catalytically efficacious due to decreased K(m) and higher k(cat) values, relative to the others.	Phenylalanine	59-64	PHE ammonia lyase 1	Arabidopsis thaliana	0-15
34358729-6	2021	We assume that the deficiency in cryptochrome 1 under HIL irradiation disrupts the interaction between HY5 and HFR1 transcription factors and photoreceptors, which affects the transcription of light-induced genes, such as CAB1, PSY and PAL1 linked to carotenoid and flavonoid biosynthesis.	Flavonoids	266-275	PHE ammonia lyase 1	Arabidopsis thaliana	236-240
9461499-4	1998	H2O2 induces the expression of PAL1 and GST but not that of ASA1.	Hydrogen Peroxide	0-4	PHE ammonia lyase 1	Arabidopsis thaliana	31-35
12239383-9	1996	Salicylic acid (SA), supplied to AIP-treated plants, restored resistance and both pathogen-induced lignification and activation of the PAL1 promoter.	Salicylic Acid	0-14	PHE ammonia lyase 1	Arabidopsis thaliana	135-139
12239383-9	1996	Salicylic acid (SA), supplied to AIP-treated plants, restored resistance and both pathogen-induced lignification and activation of the PAL1 promoter.	Salicylic Acid	16-18	PHE ammonia lyase 1	Arabidopsis thaliana	135-139
34358729-6	2021	We assume that the deficiency in cryptochrome 1 under HIL irradiation disrupts the interaction between HY5 and HFR1 transcription factors and photoreceptors, which affects the transcription of light-induced genes, such as CAB1, PSY and PAL1 linked to carotenoid and flavonoid biosynthesis.	Carotenoids	251-261	PHE ammonia lyase 1	Arabidopsis thaliana	236-240
12228452-6	1995	Histochemical staining for [beta]-glucuronidase activity showed that the PAL1 promoter is preferentially activated in photosynthetically active cells, paralleling anthocyanin accumulation.	Anthocyanins	163-174	PHE ammonia lyase 1	Arabidopsis thaliana	73-77
12297632-2	1992	We observed that steady state levels of mRNAs encoded by four flavonoid biosynthetic genes, PAL1 (encoding phenylalanine ammonia-lyase 1), CHS (encoding chalcone synthase), CHI (encoding chalcone isomerase), and DFR (encoding dihydroflavonol reductase), were temporally regulated, peaking in 3-day-old seedlings grown in continuous white light.	Flavonoids	62-71	PHE ammonia lyase 1	Arabidopsis thaliana	107-136
31087367-7	2019	In addition, transcripts encoding SA biosynthesis enzymes such as ICS2, PAL1, PAL2, and PAL4 (but not ICS1/SID2) and MES9 were more abundant, whereas GH3.5/WES1 and SOT12 transcripts that encode components involved in SA modification were less abundant following cold stress treatment.	Salicylic Acid	34-36	PHE ammonia lyase 1	Arabidopsis thaliana	72-76
35340106-11	2022	The gene expression profiles of ERF114 and PAL1 in oestradiol-inducible transgenic plants confirmed ERF114 could activate PAL1 transcriptional expression.	Estradiol	51-61	PHE ammonia lyase 1	Arabidopsis thaliana	43-47
35340106-11	2022	The gene expression profiles of ERF114 and PAL1 in oestradiol-inducible transgenic plants confirmed ERF114 could activate PAL1 transcriptional expression.	Estradiol	51-61	PHE ammonia lyase 1	Arabidopsis thaliana	122-126
35340106-12	2022	Further investigation revealed that ERF114 positively modulated PevD1-induced lignin and salicylic acid accumulation, probably by activating PAL1 transcription.	Lignin	78-84	PHE ammonia lyase 1	Arabidopsis thaliana	141-145
35340106-12	2022	Further investigation revealed that ERF114 positively modulated PevD1-induced lignin and salicylic acid accumulation, probably by activating PAL1 transcription.	Salicylic Acid	89-103	PHE ammonia lyase 1	Arabidopsis thaliana	141-145
32900979-9	2020	Moreover, nWHY1 repressed expression of phenylalanine ammonia lyase-encoding gene (PAL1) via R2R3-MYB member 15 (MYB15) during the early stages of development.	Phenylalanine	40-53	PHE ammonia lyase 1	Arabidopsis thaliana	83-87
30542810-1	2019	KEY MESSAGE: A Kelch repeat F-box containing protein, SMALL AND GLOSSY LEAVES1 (SAGL1) regulates phenylpropanoid biosynthesis as a post-translational regulator for PAL1 (phenylalanine ammonia-lyase) and an indirect transcriptional regulator for ANTHOCYANIDIN SYNTHASE.	phenylpropanoid	97-112	PHE ammonia lyase 1	Arabidopsis thaliana	164-168
30542810-4	2019	Here, we report that SMALL AND GLOSSY LEAVES1 (SAGL1), a Kelch repeat F-box protein, interacts with PAL1 protein for proteasome-mediated degradation to regulate phenylpropanoid biosynthesis in Arabidopsis.	phenylpropanoid	161-176	PHE ammonia lyase 1	Arabidopsis thaliana	100-104
30542810-10	2019	Our results suggest that SAGL1 regulates phenylpropanoid biosynthesis post-translationally at PAL1 and transcriptionally at ANS.	phenylpropanoid	41-56	PHE ammonia lyase 1	Arabidopsis thaliana	94-98
28093893-10	2018	The distal tissues of gstt2 mutant plants accumulate significantly less salicylic acid (SA) and express a reduced level of the SA biosynthetic gene PAL1.	Salicylic Acid	127-129	PHE ammonia lyase 1	Arabidopsis thaliana	148-152