PMID-sentid Pub_year Sent_text comp_official_name comp_offsetprotein_name organism prot_offset 14744147-0 2004 Molecular dynamics simulations and oxidation rates of methionine residues of granulocyte colony-stimulating factor at different pH values. Methionine 54-64 colony stimulating factor 3 Homo sapiens 77-114 14744147-1 2004 To understand the connection between the conformation of a protein molecule and the oxidation of its methionine residues, we measured the rates of oxidation of methionine residues by H(2)O(2) in granulocyte colony-stimulating factor (G-CSF) as a function of pH and also studied the structural properties of this protein as a function of pH via molecular dynamics simulations. Methionine 160-170 colony stimulating factor 3 Homo sapiens 234-239 14744147-2 2004 We found that each of the four methionine groups in G-CSF have significant and different rates of oxidation as a function of pH. Methionine 31-41 colony stimulating factor 3 Homo sapiens 52-57 14744147-3 2004 Moreover, Met(1), in the unstructured N-terminal region, has a rate of oxidation as low as half that of free methionine. Methionine 109-119 granzyme M Homo sapiens 10-16 14744147-4 2004 The structural properties of G-CSF as a function of pH are evaluated in terms of properties such as hydrogen bonding, deviations from X-ray structure, helical/helical packing, and the atomic covariance fluctuation matrix of alpha-carbons. Hydrogen 100-108 colony stimulating factor 3 Homo sapiens 29-34 14744147-4 2004 The structural properties of G-CSF as a function of pH are evaluated in terms of properties such as hydrogen bonding, deviations from X-ray structure, helical/helical packing, and the atomic covariance fluctuation matrix of alpha-carbons. Carbon 230-237 colony stimulating factor 3 Homo sapiens 29-34