PMID-sentid Pub_year Sent_text compound_name comp_offset prot_official_name organism prot_offset 19053282-9 2008 Finally, the structure of H143A HDAC8 complexed with an intact acetylated tetrapeptide substrate molecule confirms the importance of D101 for substrate binding and reveals how Y306 and the active site zinc ion together bind and activate the scissile amide linkage of acetyllysine. y306 176-180 histone deacetylase 8 Homo sapiens 32-37 15481977-6 2004 The mutation of Y306 (7.35, site of a cationic residue in P2Y12) or Y203 in the second extracellular loop selectively decreased the affinity of the agonist 2-MeSADP, and the Y306F mutation also reduced antagonist (MRS2179) affinity by 5-fold. y306 16-20 purinergic receptor P2Y12 Homo sapiens 58-63 32690262-4 2020 Our results revealed that improper binding of the coumarin group of fluorescent substrates leads to the "flipping out" of catalytic residue Y306, which reduces the enzymatic activity of HDAC8 towards fluorescent substrates. y306 140-144 histone deacetylase 8 Homo sapiens 186-191 32690262-5 2020 A pocket between the coumarin group of the substrate and thed catalytic residue Y306 was filled with the activator TM-2-51, which not only enhanced binding between HDAC8 and the fluorescent substrate complex but also stabilized Y306 in a catalytically active conformation. y306 80-84 histone deacetylase 8 Homo sapiens 164-169 32690262-5 2020 A pocket between the coumarin group of the substrate and thed catalytic residue Y306 was filled with the activator TM-2-51, which not only enhanced binding between HDAC8 and the fluorescent substrate complex but also stabilized Y306 in a catalytically active conformation. y306 228-232 histone deacetylase 8 Homo sapiens 164-169 26463496-7 2015 Molecular dynamics simulations of H180R and G304R HDAC8 mutants suggest that the bulky arginine side chain of each mutant protrudes into the substrate binding site and also causes active site residue Y306 to fluctuate away from the position required for substrate activation and catalysis. y306 200-204 histone deacetylase 8 Homo sapiens 50-55