PMID-sentid	Pub_year	Sent_text	compound_name	comp_offset	prot_official_name	organism	prot_offset
28052477-0	2017	Flexible Viologen Cyclophanes: Odd/Even Effects on Intramolecular Interactions.	cyclophanes	18-29	odd-skipped related transcription factor 1	Homo sapiens	31-34
17681353-1	2007	The cleft-type cyclophanes (ACCn, DNCn and TsDCn) were found to strongly inhibit macroscopic currents at heteromeric NMDA receptors (NR1/NR2) but not AMPA receptors expressed in Xenopus oocytes at voltage-clamp recording.	cyclophanes	15-26	glutamate ionotropic receptor NMDA type subunit 1 L homeolog	Xenopus laevis	133-136
25462252-5	2015	All the cyclophanes are more active against L. major, with EC50 in intracellular amastigotes of between 1 and 17 muM, they exhibit very low toxicity against mammalian cells THP-1 and in some cases they present a higher selectivity index than the reference anti-leishmanial drugs amphotericin B and miltefosine.	cyclophanes	8-19	GLI family zinc finger 2	Homo sapiens	173-178
19947967-4	2010	In contrast, the cyclophanes CP-2 and CP-3 in the aqueous medium showed structured anthracene absorption and emission spectra similar to those obtained in methanol and acetonitrile.	cyclophanes	17-28	ceruloplasmin	Homo sapiens	29-42
18604858-1	2008	Cyclophanes of perylene tetracarboxylic diimides (PDIs) with different substituents at the bay positions, namely four phenoxy groups at the 1,7-positions (1), four piperidinyl groups at the 1,7-positions (2), and eight phenoxy groups at the 1,6,7,12-positions (3) of the two PDI rings, have been synthesized by the condensation of perylene dianhydride with amine in a dilute solution.	cyclophanes	0-11	peptidyl arginine deiminase 1	Homo sapiens	50-53
18604858-4	2008	The main absorption band of the cyclophanes shifts significantly to the higher energy side in comparison with their monomeric counterparts, which indicates significant pi-pi interaction between the PDI units in the cyclophanes.	cyclophanes	32-43	peptidyl arginine deiminase 1	Homo sapiens	198-201
18604858-4	2008	The main absorption band of the cyclophanes shifts significantly to the higher energy side in comparison with their monomeric counterparts, which indicates significant pi-pi interaction between the PDI units in the cyclophanes.	cyclophanes	215-226	peptidyl arginine deiminase 1	Homo sapiens	198-201
18604858-5	2008	Nevertheless, both the electronic absorption and fluorescence spectra of the cyclophanes were found to change along with the number and nature of the side groups at the bay positions of the PDI ring.	cyclophanes	77-88	peptidyl arginine deiminase 1	Homo sapiens	190-193
18604858-7	2008	Electrochemical studies reveal that the first oxidation and reduction potentials of the PDI ring in the cyclophanes increase significantly compared with those of the corresponding monomeric counterparts, in line with the change in the energy of the HOMO and LUMO according to the theoretical calculations.	cyclophanes	104-115	peptidyl arginine deiminase 1	Homo sapiens	88-91
21210036-1	2011	We synthesized a few novel cyclophanes CP-1 to CP-4 containing anthracene units linked together through different bridging and spacer groups and have investigated their interactions with various nucleosides and nucleotides.	cyclophanes	27-38	ceruloplasmin	Homo sapiens	39-51
18088135-4	2008	Both cyclophanes contain a severely bent pyrene unit (6: theta = 93.6 degrees and 16: theta = 95.8 degrees , according to DFT-calculations (B3LYP/6-311G**)), which was generated at room temperature by a valence isomerization/dehydrogenation (VID) reaction.	cyclophanes	5-16	protein tyrosine phosphatase non-receptor type 22	Homo sapiens	142-145
17681353-1	2007	The cleft-type cyclophanes (ACCn, DNCn and TsDCn) were found to strongly inhibit macroscopic currents at heteromeric NMDA receptors (NR1/NR2) but not AMPA receptors expressed in Xenopus oocytes at voltage-clamp recording.	cyclophanes	15-26	nodal homolog 2 L homeolog	Xenopus laevis	137-140
17681353-3	2007	Mutations at NR1 N650, located in the vestibule of the channel pore, reduced the inhibition by DNCn and TsDCn, suggesting that the residue (N650) interacts with these cleft-type cyclophanes.	cyclophanes	178-189	glutamate receptor, ionotropic, NMDA1 (zeta 1)	Mus musculus	13-16
16895414-3	2006	The X-ray crystal structures of the doubly bridged cyclophanes 15 and 16 and the triply bridged system 23 show that the saddle-like conformation of the ex-TTF framework is enhanced by the short bridges between the dithiole rings.	cyclophanes	51-62	ras homolog family member H	Homo sapiens	155-158
14759198-1	2004	Cyclophanes with the largest-to-date polycyclic aromatic hydrocarbon (hexa-peri-hexabenzocoronene, HBC) to be entrained in such a structural motif are reported.	cyclophanes	0-11	hexosaminidase subunit alpha	Homo sapiens	70-74
14759198-1	2004	Cyclophanes with the largest-to-date polycyclic aromatic hydrocarbon (hexa-peri-hexabenzocoronene, HBC) to be entrained in such a structural motif are reported.	cyclophanes	0-11	keratin 88, pseudogene	Homo sapiens	99-102
33634292-1	2021	Two tetraphenylethene-based tetracationic cyclophanes 1 and 2 were synthesized via a one-step SN2 reaction without using any template.	cyclophanes	42-53	solute carrier family 38 member 5	Homo sapiens	94-97
33195008-2	2020	The aim of this review is to introduce readers to a chiral moiety applicable to CPL studies focusing on chiral cyclophanes because the rigid cyclophanes are able to hold the vector directions of electric dipole transition moment and imaginary magnetic dipole transition moment.	cyclophanes	111-122	hephaestin	Homo sapiens	80-83
33195008-2	2020	The aim of this review is to introduce readers to a chiral moiety applicable to CPL studies focusing on chiral cyclophanes because the rigid cyclophanes are able to hold the vector directions of electric dipole transition moment and imaginary magnetic dipole transition moment.	cyclophanes	141-152	hephaestin	Homo sapiens	80-83