PMID-sentid	Pub_year	Sent_text	compound_name	comp_offset	prot_official_name	organism	prot_offset
27810331-4	2017	EMCs with high MSI (MSI-H) showed a mean left shift of 3 nucleotides (nt), which was significantly different from 6 nt in CRCs.	nt	70-72	RB binding protein 4, chromatin remodeling factor	Homo sapiens	15-18
28939775-7	2017	As inferred from biochemical studies, in the Poliota/Polkappa pathway, Poliota inserts a nucleotide (nt) opposite 3-dMeA and Polkappa extends synthesis from the inserted nt.	nt	101-103	DNA polymerase lambda	Homo sapiens	53-61
28939775-7	2017	As inferred from biochemical studies, in the Poliota/Polkappa pathway, Poliota inserts a nucleotide (nt) opposite 3-dMeA and Polkappa extends synthesis from the inserted nt.	nt	101-103	DNA polymerase lambda	Homo sapiens	125-133
27810331-4	2017	EMCs with high MSI (MSI-H) showed a mean left shift of 3 nucleotides (nt), which was significantly different from 6 nt in CRCs.	nt	70-72	RB binding protein 4, chromatin remodeling factor	Homo sapiens	20-25
28191013-7	2017	HF exhibited hypermethylation at the -260 nucleotide (nt) in the Pgc-1alpha promoter.	nt	54-56	peroxisome proliferative activated receptor, gamma, coactivator 1 alpha	Mus musculus	65-75
24440637-7	2014	These 50-60 nucleotide (nt) molecules are 3" uridylated by RET1 TUTase and stabilized via association with the gRNA binding complex (GRBC).	nt	24-26	visual system homeobox 2	Homo sapiens	59-63
26102282-13	2015	CONCLUSIONS: Our meta-analysis revealed that NTs supplementation significantly increased plasma 18:2 n-6, 20:3 n-6, and 20:4 n-6 PUFA concentrations in infants, but did not affect erythrocyte FA composition.	nt	45-48	pumilio RNA binding family member 3	Homo sapiens	129-133
24440637-7	2014	These 50-60 nucleotide (nt) molecules are 3" uridylated by RET1 TUTase and stabilized via association with the gRNA binding complex (GRBC).	nt	24-26	terminal uridylyl transferase 1, U6 snRNA-specific	Homo sapiens	64-70
19372537-2	2009	The Pumilio Puf domain binds to a pair of 32 nucleotide (nt) Nanos response elements (NRE1 and NRE2) within the 3" untranslated region of hb mRNA.	nt	57-59	NME/NM23 nucleoside diphosphate kinase 2	Homo sapiens	12-15
23669334-6	2013	Meanwhile, the granular cell macrophages colony stimulating factor (GM-CSF) increased significantly in the 0.04% NT group.	nt	113-115	colony stimulating factor 2 (granulocyte-macrophage)	Mus musculus	15-66
23669334-6	2013	Meanwhile, the granular cell macrophages colony stimulating factor (GM-CSF) increased significantly in the 0.04% NT group.	nt	113-115	colony stimulating factor 2 (granulocyte-macrophage)	Mus musculus	68-74
22916835-2	2012	A distinct pattern of reactivity was observed on ssDNA, which repeated every 8 nucleotides (nt) and is consistent with the known binding site size of NS3.	nt	92-94	KRAS proto-oncogene, GTPase	Homo sapiens	150-153
23343928-8	2012	Consistent with previous studies, we observed that Dicer preferentially processes these RNAs at a site 21-22 nucleotide (nt) from the two-base 3"-overhangs.	nt	8-10	dicer 1, ribonuclease III	Homo sapiens	51-56
22015427-1	2012	The variability in the nucleotide (nt) and amino acid (aa) sequences of the coat protein (CP) of Cymbidium mosaic virus (CymMV), which naturally infects orchids worldwide, was investigated.	nt	35-37	coat protein	Cymbidium mosaic virus	90-92
21828262-9	2011	Preconfluent cells transiently transfected with the reporter showed both MNF treatment- and AhR knockdown-mediated luciferase induction, but mutation of a computationally predicted dioxin response element (DRE) at nucleotide (nt) -3476 did not attenuate these effects.	nt	10-12	aryl hydrocarbon receptor	Homo sapiens	92-95
30731756-17	2011	Sequence comparisons showed that the partial HSP70h gene from the Chinese PBNSPaV isolates shared 82.2 to 100% nucleotide (nt) and 94.0 to 100% amino acid (aa) similarities between them and 83.6 to 99.1% nt and 94 to 100% aa similarities with the corresponding region of the other PBNSPaV isolates deposited in GenBank.	nt	123-125	heat shock protein 70-like protein	Plum bark necrosis stem pitting-associated virus	45-51
30731756-17	2011	Sequence comparisons showed that the partial HSP70h gene from the Chinese PBNSPaV isolates shared 82.2 to 100% nucleotide (nt) and 94.0 to 100% amino acid (aa) similarities between them and 83.6 to 99.1% nt and 94 to 100% aa similarities with the corresponding region of the other PBNSPaV isolates deposited in GenBank.	nt	204-206	heat shock protein 70-like protein	Plum bark necrosis stem pitting-associated virus	45-51
20663474-2	2010	The nucleotide (nt) and amino acid (aa) sequence of the full-length VP4 protein of the PoRV strain 61/07/Ire was determined.	nt	16-18	outer capsid spike protein VP4	Rotavirus A	68-71
19397531-5	2009	In the hyperbilirubinemic group, 23 of 91 (25.3%) infants demonstrated variant of UGT1A1 at nucleotides (nt) 211 as compared to 6 of 86 (7%) in the control group (p = 0.001).	nt	54-56	UDP glucuronosyltransferase family 1 member A1	Homo sapiens	82-88
19372537-2	2009	The Pumilio Puf domain binds to a pair of 32 nucleotide (nt) Nanos response elements (NRE1 and NRE2) within the 3" untranslated region of hb mRNA.	nt	57-59	pumilio	Drosophila melanogaster	4-11
23541590-6	2013	The results suggest a consistent picture of a possible molecular mechanism by which the NT state induces changes in the H1-S2 loop and more stable longitudinal bonds, both of which locate the H1-S2 and M-loop in more favorable positions to form lateral contacts.	nt	88-90	H1.3 linker histone, cluster member	Homo sapiens	120-125
23541590-6	2013	The results suggest a consistent picture of a possible molecular mechanism by which the NT state induces changes in the H1-S2 loop and more stable longitudinal bonds, both of which locate the H1-S2 and M-loop in more favorable positions to form lateral contacts.	nt	88-90	H1.3 linker histone, cluster member	Homo sapiens	192-197
22836041-2	2012	SNP in OPN at nucleotide (nt) -443 and its serum protein level were analyzed.	nt	26-28	secreted phosphoprotein 1	Homo sapiens	7-10
21823228-7	2011	These 50-60 nucleotide (nt) molecules are 3" uridylated by RET1 TUTase and stabilized via association with the gRNA binding complex (GRBC).	nt	24-26	visual system homeobox 2	Homo sapiens	59-63
21823228-7	2011	These 50-60 nucleotide (nt) molecules are 3" uridylated by RET1 TUTase and stabilized via association with the gRNA binding complex (GRBC).	nt	24-26	terminal uridylyl transferase 1, U6 snRNA-specific	Homo sapiens	64-70
18443038-2	2008	We studied a father and son in an Iranian-American family who had elevated Hb F levels and found a novel T-to-G transversion at nucleotide (nt) -567 of the HBG2 promoter.	nt	140-142	hemoglobin subunit gamma 2	Homo sapiens	156-160
17163517-1	2007	We have previously found that the DNA fragment from nucleotides (nts) -287 to +110 in the HSP70B" gene is a functional promoter responding to Cadmium Chloride-induced cytotoxicity (Wada et al., Biotechnol Bioeng, 92, 410-415, 2005).	nt	65-68	heat shock protein family A (Hsp70) member 7 (pseudogene)	Homo sapiens	90-96
11805446-1	2001	We have previously reported a single nucleotide polymorphism (SNP) at nucleotide (nt) position -88 (G or T) within an interferon-stimulated response element-like sequence in the promoter region of the MxA gene, which correlated with responsiveness of hepatitis C patients to interferon.	nt	82-84	MX dynamin like GTPase 1	Homo sapiens	201-204
16775341-5	2006	Using dicistronic reporter systems for IRES detection, we detected IRES activity within SV40 nucleotides (nts) 565 to 916, the region between the VP2 and VP3 AUGs.	nt	106-109	hypothetical protein	Macaca mulatta polyomavirus 1	146-149
16775341-5	2006	Using dicistronic reporter systems for IRES detection, we detected IRES activity within SV40 nucleotides (nts) 565 to 916, the region between the VP2 and VP3 AUGs.	nt	106-109	hypothetical protein	Macaca mulatta polyomavirus 1	154-157
16285929-2	2005	We now show that the DM1 insulator is maintained in a local heterochromatin context: an antisense transcript emanating from the adjacent SIX5 regulatory region extends into the insulator element and is converted into 21 nucleotide (nt) fragments with associated regional histone H3 lysine 9 (H3-K9) methylation and HP1gamma recruitment that is embedded within a region of euchromatin-associated H3 lysine 4 (H3-K4) methylation.	nt	41-43	SIX homeobox 5	Homo sapiens	137-141
16285929-2	2005	We now show that the DM1 insulator is maintained in a local heterochromatin context: an antisense transcript emanating from the adjacent SIX5 regulatory region extends into the insulator element and is converted into 21 nucleotide (nt) fragments with associated regional histone H3 lysine 9 (H3-K9) methylation and HP1gamma recruitment that is embedded within a region of euchromatin-associated H3 lysine 4 (H3-K4) methylation.	nt	41-43	chromobox 3	Homo sapiens	315-323
12649162-6	2003	The second patient was homozygous for an in-frame deletion (GAC) from nucleotide (nt) 498 to 500 or nt 501 to 503 of the cDNA sequence, predicting deletion of either aspartic acid (Asp) 140 or 141.	nt	16-18	glutaminase	Homo sapiens	60-63
11841218-0	2002	Functional role of "N" (nucleotide) and "P" (phosphorylation) domain interactions in the sarcoplasmic reticulum (SERCA) ATPase.	nt	20-22	dynein axonemal heavy chain 8	Homo sapiens	120-126
15849196-1	2005	Previously, we have shown that two non-canonical specificity protein (SP)-binding sites within the proximal promoter (nucleotide (nt) -139 to +5) of the chicken Col10a1 gene are involved in conferring tissue-specific expression of type X collagen to hypertrophic chondrocytes.	nt	130-132	collagen, type X, alpha 1	Gallus gallus	161-168
14689214-6	2004	The IL-2 level of the NS/NT free group was significantly lower than that of the NS/NT supplemented group.	nt	25-27	interleukin 2	Rattus norvegicus	4-8
14689214-6	2004	The IL-2 level of the NS/NT free group was significantly lower than that of the NS/NT supplemented group.	nt	83-85	interleukin 2	Rattus norvegicus	4-8
12181677-4	2002	The nucleotide (nt) and aa sequences of the CP were 46.88 % to 51.63 % and 45.34 % to 57.06 % identical to other tobamoviruses, respectively.	nt	16-18	golgi phosphoprotein 3	Homo sapiens	44-46
9486973-5	1998	Sequencing of the entire Na+/I- symporter (NIS) cDNA revealed a C to G transversion of nucleotide (nt) 1146 in exon 6, resulting in a Gln 267 (CAG) to Glu (GAG) substitution.	nt	19-21	solute carrier family 5 member 5	Homo sapiens	25-41
10991985-2	2000	A series of AS oligodeoxynucleotides (ODNs) complementary to the huntingtin transcript [i.e., nucleotide (nt) -25 to 35] were designed and synthesized, and the AS efficacy was investigated by using a combination of in vitro transcription and translation to mimic in vivo conditions.	nt	52-54	huntingtin	Homo sapiens	65-75
10395601-15	1999	Our data on the proinflammatory cytokine, in conjunction with MPO activity, strongly suggest that NT supplementation aggravates the severity of DSS-induced colitis in rats.	nt	98-100	myeloperoxidase	Rattus norvegicus	62-65
11155358-2	2000	The homology of the nucleotide (nt) and amino acid sequences of vp39 and VP39, respectively, of BmNPV-Ch and a Japanese isolate of BmNPV (BmNPV-Ja) were found to be 97.5% and 97.1%, respectively.	nt	32-34	VP39	Bombyx mori nucleopolyhedrovirus	64-68
11155358-2	2000	The homology of the nucleotide (nt) and amino acid sequences of vp39 and VP39, respectively, of BmNPV-Ch and a Japanese isolate of BmNPV (BmNPV-Ja) were found to be 97.5% and 97.1%, respectively.	nt	32-34	VP39	Bombyx mori nucleopolyhedrovirus	73-77
9716608-2	1998	Here we report an unusual regulator Rhnull where two G-->A nucleotide (nt) transitions occurred in trans, targeting different regions of the two copies of Rh50 gene.	nt	74-76	Rh associated glycoprotein	Homo sapiens	158-162
8921896-1	1996	The cDNA encoding the equine copper/zinc superoxide dismutase (SOD1) was cloned from leukocyte total RNA from healthy horses and its nucleotide (nt) sequence was determined.	nt	145-147	superoxide dismutase 1	Equus caballus	63-67
9224620-3	1997	In the present study we have identified within intron 1 between nucleotides (nt) +5000 and +5150 of the SPARC gene an enhancer element that bound to two transcription factors of 48 and 52 kDa and between nt +5000 and +5523 a DNase I hypersensitive site.	nt	12-14	secreted acidic cysteine rich glycoprotein	Mus musculus	104-109
9224620-3	1997	In the present study we have identified within intron 1 between nucleotides (nt) +5000 and +5150 of the SPARC gene an enhancer element that bound to two transcription factors of 48 and 52 kDa and between nt +5000 and +5523 a DNase I hypersensitive site.	nt	12-14	deoxyribonuclease I	Mus musculus	225-232
9185851-1	1997	The nucleotide (nt) sequence of the 3" end of the yeast HIS3 mRNA was determined by PCR amplification of the 3" end.	nt	16-18	imidazoleglycerol-phosphate dehydratase HIS3	Saccharomyces cerevisiae S288C	56-60
8918267-1	1996	The nucleotide (nt) sequence encoding the bovine homologue of interleukin-5 (boIL-5) was determined.	nt	16-18	LOC100335844	Bos taurus	62-75
8666243-3	1996	The human and rat LAMP cDNAs showed 94% identity at the nucleotide (nt) level, and the encoded 338-amino-acid (aa) polypeptides shared 99% sequence identity.	nt	43-45	limbic system associated membrane protein	Homo sapiens	18-22
7557438-7	1995	One of the clones, which has very high homology to human, mouse and rat Hox A5 (83 and 99% at the nt and amino-acid levels, respectively, in the homeodomain region), was analyzed further.	nt	98-100	homeo box A5	Rattus norvegicus	72-78
8642655-2	1996	Ligation of 441 nucleotides (nt) containing a splice acceptor (SA) site to the downstream portion of the remaining gag region restored the level of the unspliced message, simultaneously activating a cryptic splice donor (SD) site in the middle of the p30 coding region (between nt 1596 and 1597).	nt	29-31	centromere protein V	Homo sapiens	251-254
7590291-3	1995	Rabbit GAPDH exhibits a high degree of homology to the mouse, rat, hamster, chicken and human GAPDH on both the nucleotide (nt) and amino acid (aa) levels.	nt	124-126	glyceraldehyde-3-phosphate dehydrogenase	Oryctolagus cuniculus	7-12
7590291-3	1995	Rabbit GAPDH exhibits a high degree of homology to the mouse, rat, hamster, chicken and human GAPDH on both the nucleotide (nt) and amino acid (aa) levels.	nt	124-126	glyceraldehyde-3-phosphate dehydrogenase	Homo sapiens	94-99
7642105-2	1995	The horse and donkey LH beta-subunit sequences were very similar (97% identity at the nucleotide (nt) level; 93% at the amino acid (aa) level), confirming their very close evolutionary linkage and also indicating that the C-terminal extension in both subunits occurred prior to the divergence of horse and donkeys.	nt	73-75	LOW QUALITY PROTEIN: lutropin/choriogonadotropin subunit beta	Equus asinus	21-28
7721106-1	1995	The nucleotide (nt) sequence of the human cDNA encoding PAP, a pancreatic secretory protein induced during acute pancreatitis, was found to be identical with that of a gene activated in human primary hepatocellular cancer, designated HIP.	nt	16-18	regenerating family member 3 alpha	Homo sapiens	56-59
8056339-1	1994	We report here the nucleotide (nt) sequence of a rat liver cDNA encoding Zn-alpha 2-glycoprotein (Zn-alpha 2-gp), a plasma protein with a high degree of sequence similarity to class-I major histocompatibility complex (MHC) antigens.	nt	31-33	alpha-2-glycoprotein 1, zinc-binding	Rattus norvegicus	73-96
7821808-1	1994	The nucleotide (nt) sequence encoding the ovine homologue of interleukin-8 (IL-8) was determined.	nt	16-18	C-X-C motif chemokine ligand 8	Homo sapiens	61-74
7821808-1	1994	The nucleotide (nt) sequence encoding the ovine homologue of interleukin-8 (IL-8) was determined.	nt	16-18	C-X-C motif chemokine ligand 8	Homo sapiens	76-80
7918660-3	1994	The GluR3 cDNAs demonstrated an 94.1-94.7% nucleotide (nt) identity with the corresponding rat cDNAs.	nt	55-57	glutamate ionotropic receptor AMPA type subunit 3	Rattus norvegicus	4-9
8088535-4	1994	C. albicans FAS1 and its product exhibit a high degree of overall sequence relatedness to their counterparts in S. cerevisiae, with identities of 68 and 63% at the nucleotide (nt) and aa level, respectively.	nt	99-101	tetrafunctional fatty acid synthase subunit FAS1	Saccharomyces cerevisiae S288C	12-16
8056339-1	1994	We report here the nucleotide (nt) sequence of a rat liver cDNA encoding Zn-alpha 2-glycoprotein (Zn-alpha 2-gp), a plasma protein with a high degree of sequence similarity to class-I major histocompatibility complex (MHC) antigens.	nt	31-33	alpha-2-glycoprotein 1, zinc-binding	Rattus norvegicus	98-111
8125336-3	1994	One has a nucleotide (nt) sequence identical or very similar to MET2 of Saccharomyces cerevisiae.	nt	22-24	homoserine O-acetyltransferase	Saccharomyces cerevisiae S288C	64-68
8206384-3	1994	The nucleotide (nt) sequence of the 5"-flanking region of the rat c-fos gene displays remarkable similarity with the mouse and human c-fos genes (93 and 77% identity, respectively).	nt	16-18	Fos proto-oncogene, AP-1 transcription factor subunit	Rattus norvegicus	66-71
8206384-3	1994	The nucleotide (nt) sequence of the 5"-flanking region of the rat c-fos gene displays remarkable similarity with the mouse and human c-fos genes (93 and 77% identity, respectively).	nt	16-18	Fos proto-oncogene, AP-1 transcription factor subunit	Homo sapiens	133-138
8005585-2	1994	In this mutant LDL receptor gene, the nine bases from nucleotide (nt) 1115 to nt 1123 (AGGGTGGCT) were replaced by six different bases (CACTGA), and consequently the four amino acids from codon 351 to 354, Glu-Gly-Gly-Tyr, were replaced by three amino acids, Ala-Leu-Asn, in the conserved amino acid region of the growth factor repeat B of the LDL receptor.	nt	12-14	low density lipoprotein receptor	Homo sapiens	15-27
8163200-3	1994	Comparison of the nucleotide (nt) sequences showed a single transition: G-->A in the second base of codon 690 of the tsBN462 CCG1 cDNA, resulting in a Gly690-->Asp change.	nt	30-32	transcription initiation factor TFIID subunit 1	Mesocricetus auratus	128-132
8262392-2	1993	Comparison of the nucleotide (nt) and deduced amino acid (aa) sequences to those of previously described GAP cDNAs revealed greater than 90% identity.	nt	30-32	RAS p21 protein activator 1	Rattus norvegicus	105-108
8444352-2	1993	A strong homology and evolutionary conservation was found in both the nucleotide (nt) and deduced amino acid sequences of CK-II from various species, with up to 100% identity among vertebrate homologues and 88% and 64% identity on the nt level with Drosophila melanogaster and yeast, respectively, compared with rabbit CK-II.	nt	82-84	casein kinase IIalpha	Drosophila melanogaster	122-127
7916704-1	1993	The nucleotide (nt) sequence of the cDNA encoding mouse thyroid peroxidase (TPO) has been determined.	nt	16-18	thyroid peroxidase	Mus musculus	56-74
7916704-1	1993	The nucleotide (nt) sequence of the cDNA encoding mouse thyroid peroxidase (TPO) has been determined.	nt	16-18	thyroid peroxidase	Mus musculus	76-79
1383093-1	1992	The nucleotide (nt) sequence of the structural gene (Tcp-1) encoding mouse t-complex polypeptide 1 (TCP-1) has been determined.	nt	16-18	t-complex protein 1	Mus musculus	53-58
1333117-10	1992	The Tci and Tct sites of EUS1 were mapped by S1 nuclease analyses to nts 13,637 and 11,408, respectively.	nt	69-72	transcobalamin 1	Homo sapiens	4-7
1383093-1	1992	The nucleotide (nt) sequence of the structural gene (Tcp-1) encoding mouse t-complex polypeptide 1 (TCP-1) has been determined.	nt	16-18	t-complex protein 1	Mus musculus	75-98
1383093-1	1992	The nucleotide (nt) sequence of the structural gene (Tcp-1) encoding mouse t-complex polypeptide 1 (TCP-1) has been determined.	nt	16-18	t-complex protein 1	Mus musculus	100-105
1874446-1	1991	The nucleotide (nt) sequence of the entire CpG island in the 5" region of the human glucose-6-phosphate dehydrogenase-encoding gene (G6PD) and of the corresponding region in mouse was determined.	nt	16-18	glucose-6-phosphate dehydrogenase	Homo sapiens	84-117
1861940-5	1991	Interleukin-2 production by stimulated mononuclear cells was higher in the NT+ compared with the NT- group at 2 months of age (0.90 +/- 0.28 U/mL, 0.27 +/- 0.11 U/mL, respectively); neither formula-fed group differed significantly from the breast-fed group.	nt	75-78	interleukin 2	Homo sapiens	0-13
1861940-5	1991	Interleukin-2 production by stimulated mononuclear cells was higher in the NT+ compared with the NT- group at 2 months of age (0.90 +/- 0.28 U/mL, 0.27 +/- 0.11 U/mL, respectively); neither formula-fed group differed significantly from the breast-fed group.	nt	75-77	interleukin 2	Homo sapiens	0-13
1874446-1	1991	The nucleotide (nt) sequence of the entire CpG island in the 5" region of the human glucose-6-phosphate dehydrogenase-encoding gene (G6PD) and of the corresponding region in mouse was determined.	nt	16-18	glucose-6-phosphate dehydrogenase	Homo sapiens	133-137
3000874-1	1985	We have determined the nucleotide (nt) sequence of a segment of the yeast chromosome carrying the RAD2 gene.	nt	35-37	ssDNA endodeoxyribonuclease RAD2	Saccharomyces cerevisiae S288C	98-102
1993873-3	1991	and which also runs leftward, overlapping ES1 by 1600 nucleotides (nt) at the 3" end, was mapped to this region.	nt	67-69	glutamine amidotransferase class 1 domain containing 3	Homo sapiens	42-45
19233875-3	2009	We previously demonstrated that a 60 nucleotide (nt) element at the 5" end of the mRNA encoding Rrp41 is preferentially bound and decapped by Dcp2.	nt	49-51	exosome component 4	Homo sapiens	96-101
19233875-3	2009	We previously demonstrated that a 60 nucleotide (nt) element at the 5" end of the mRNA encoding Rrp41 is preferentially bound and decapped by Dcp2.	nt	49-51	decapping mRNA 2	Homo sapiens	142-146
34990484-2	2022	This pathway is induced by virus-derived double-stranded RNAs (dsRNA) that are cleaved by the ribonuclease Dicer 2 (Dcr2) into predominantly 21 nucleotide (nt) virus-derived small interfering RNAs (vsiRNAs).	nt	156-158	Dicer-2	Drosophila melanogaster	116-120
2663651-1	1989	Mutations in the suf9, suf10, and suf11 genes of yeast suppress + 1 nucleotide (nt) insertions in proline codons.	nt	80-82	SUF10	Saccharomyces cerevisiae S288C	23-28
2663651-1	1989	Mutations in the suf9, suf10, and suf11 genes of yeast suppress + 1 nucleotide (nt) insertions in proline codons.	nt	80-82	SUF11	Saccharomyces cerevisiae S288C	34-39
2016061-5	1991	Nucleotide (nt) and aa sequence alignment of the BCP54 translation product reveals it is 78% and 84% homologous with RATALD at the nt and aa levels, respectively.	nt	12-14	aldehyde dehydrogenase 3 family member A1	Bos taurus	49-54
2121612-1	1990	We report the cloning, nucleotide (nt) sequence and expression of the cDNA (pah) encoding phenylalanine hydroxylase (PAH) of Drosophila melanogaster.	nt	35-37	Henna	Drosophila melanogaster	76-79
2121612-1	1990	We report the cloning, nucleotide (nt) sequence and expression of the cDNA (pah) encoding phenylalanine hydroxylase (PAH) of Drosophila melanogaster.	nt	35-37	Henna	Drosophila melanogaster	90-115
2121612-1	1990	We report the cloning, nucleotide (nt) sequence and expression of the cDNA (pah) encoding phenylalanine hydroxylase (PAH) of Drosophila melanogaster.	nt	35-37	Henna	Drosophila melanogaster	117-120
2121612-6	1990	At the nt level, the similarity of the D. melanogaster cDNA with human and rat pah cDNAs is 57.9% and 58.1%, respectively.	nt	7-9	phenylalanine hydroxylase	Rattus norvegicus	79-82
2676730-2	1989	The nucleotide (nt) sequences of four bovine IRBP cDNA clones have been determined.	nt	16-18	retinol binding protein 3	Bos taurus	45-49
2721497-1	1989	The region lying between nucleotides (nt) -110 and -45 of chicken acetylcholine receptor alpha-subunit gene 5" upstream sequence confers developmental control of expression in primary cultures of chicken myotubes.	nt	38-40	ovomucin, alpha subunit	Gallus gallus	89-102
3322944-1	1987	The nucleotide (nt) sequence in a 757-bp [corrected] segment downstream from the intron-containing T4 phage thymidylate synthase gene (td) has been determined.	nt	16-18	thymidylate synthase	Mus musculus	108-128
32801563-3	2020	A 407 bp nucleotide (nt) segment from the first intron of FABP4 was amplified by polymerase chain reaction, sequenced, and analyzed in the different samples.	nt	21-23	fatty acid-binding protein, adipocyte	Ovis aries	58-63
33044148-16	2020	The identity of nucleotide (nt) sequences of Cph gene of RLMV isolates found in Poland was revealed.	nt	7-9	carboxypeptidase E	Homo sapiens	45-48
32531454-4	2020	Here, we identified a new exon in the insulin-like 3 gene (INSL3), which evolved ~50 million years ago, and led to a splicing variant with 31 extra amino acid residues in addition to the original 95 nucleotides (NTs) of INSL3.	nt	212-215	insulin like 3	Homo sapiens	38-52
32531454-4	2020	Here, we identified a new exon in the insulin-like 3 gene (INSL3), which evolved ~50 million years ago, and led to a splicing variant with 31 extra amino acid residues in addition to the original 95 nucleotides (NTs) of INSL3.	nt	212-215	insulin like 3	Homo sapiens	59-64
31994393-5	2020	The utility of the trifluoromethylated nucleotides as probes for 19F NMR-based real-time enzymatic reaction monitoring is demonstrated with three different human nucleotide hydrolases (Fhit, DcpS, and cNIIIB).	nt	19-50	fragile histidine triad diadenosine triphosphatase	Homo sapiens	185-189
32028019-2	2020	Since children with TNAP deficiency develop bone metaphyseal auto-inflammations in addition to rickets, we hypothesized that TNAP also exerts anti-inflammatory effects relying on the hydrolysis of pro-inflammatory adenosine nucleotides into the anti-inflammatory adenosine.	nt	214-235	alkaline phosphatase, liver/bone/kidney	Mus musculus	125-129
32246222-8	2020	The results showed that Sf9 lbr contains an Orf of 2040 nucleotides (NTs), which encodes a predicted protein of 679 amino acids (AAs).	nt	69-72	lamin B receptor	Homo sapiens	28-31
32244942-4	2020	Specific, ~20-base pair siRNA or miRNA duplexes with 2 nucleotide (nt) 3"-overhangs are generated by Dicer when an RNA substrate is anchored within the platform-PAZ-connector helix (PPC) region.	nt	55-70	dicer 1, ribonuclease III	Homo sapiens	101-106
31994393-5	2020	The utility of the trifluoromethylated nucleotides as probes for 19F NMR-based real-time enzymatic reaction monitoring is demonstrated with three different human nucleotide hydrolases (Fhit, DcpS, and cNIIIB).	nt	19-50	decapping enzyme, scavenger	Homo sapiens	191-195
31994393-5	2020	The utility of the trifluoromethylated nucleotides as probes for 19F NMR-based real-time enzymatic reaction monitoring is demonstrated with three different human nucleotide hydrolases (Fhit, DcpS, and cNIIIB).	nt	19-50	5'-nucleotidase, cytosolic IIIB	Homo sapiens	201-207
31816633-4	2020	This low level of TdT resulted in a low number of N nucleotide insertions in the complementarity-determining region-3 (CDR3) of their TCR repertoire, allowing the usage of short homology repeats within the germline-encoded VDJ segments to generate invariant/public cytomegalovirus-reactive CDR3 sequences (TRGV8-TRJP1-CATWDTTGWFKIF, TRDV2-TRDD3-CACDTGGY, and TRDV1-TRDD3-CALGELGD).	nt	50-62	DNA nucleotidylexotransferase	Homo sapiens	18-21
31866012-3	2020	In this study, we demonstrate that C-terminal binding protein 2 (CtBP2), a critical transcriptional co-repressor harboring pyridine nucleotide sensing capability, orchestrates the EMT program at least in part through a novel transcriptional interaction with an octamer transcription factor, OCT1 (POU2F1, POU class 2 homeobox 1).	nt	123-142	C-terminal binding protein 2	Homo sapiens	35-63
31866012-3	2020	In this study, we demonstrate that C-terminal binding protein 2 (CtBP2), a critical transcriptional co-repressor harboring pyridine nucleotide sensing capability, orchestrates the EMT program at least in part through a novel transcriptional interaction with an octamer transcription factor, OCT1 (POU2F1, POU class 2 homeobox 1).	nt	123-142	C-terminal binding protein 2	Homo sapiens	65-70
31866012-3	2020	In this study, we demonstrate that C-terminal binding protein 2 (CtBP2), a critical transcriptional co-repressor harboring pyridine nucleotide sensing capability, orchestrates the EMT program at least in part through a novel transcriptional interaction with an octamer transcription factor, OCT1 (POU2F1, POU class 2 homeobox 1).	nt	123-142	POU class 2 homeobox 1	Homo sapiens	291-295
31866012-3	2020	In this study, we demonstrate that C-terminal binding protein 2 (CtBP2), a critical transcriptional co-repressor harboring pyridine nucleotide sensing capability, orchestrates the EMT program at least in part through a novel transcriptional interaction with an octamer transcription factor, OCT1 (POU2F1, POU class 2 homeobox 1).	nt	123-142	POU class 2 homeobox 1	Homo sapiens	297-303
31866012-3	2020	In this study, we demonstrate that C-terminal binding protein 2 (CtBP2), a critical transcriptional co-repressor harboring pyridine nucleotide sensing capability, orchestrates the EMT program at least in part through a novel transcriptional interaction with an octamer transcription factor, OCT1 (POU2F1, POU class 2 homeobox 1).	nt	123-142	POU class 2 homeobox 1	Homo sapiens	305-327
31564557-2	2019	Spt5 plays specific roles in the transcription of inflammation and stress-induced genes and tri-nucleotide expanded-repeat genes involved in inherited neurological pathologies.	nt	92-106	SPT5 homolog, DSIF elongation factor subunit	Homo sapiens	0-4
31977203-1	2020	The radical SAM enzyme, viperin, exerts a wide range of antiviral effects through both the synthesis of the antiviral nucleotide 3"-deoxy-3", 4"-didehydro-CTP (ddhCTP) and through its interactions with various cellular and viral proteins.	nt	118-158	radical S-adenosyl methionine domain containing 2	Homo sapiens	24-31
31941414-1	2020	Objective: The possible effect of NMDAR (N-methyl-D-aspartate receptor)-NMNAT1/2 (nicotinamide/nicotinic acid mono-nucleotide adenylyltransferase) signaling pathway on the neuronal cell damage and cognitive impairment of aged rats anesthetized by sevoflurane was explored.Methods: Adult male Wistar rats were selected and divided into Control, Sevo (Sevoflurane), Sevo+DCS (NMDAR agonist D-cycloserine) 30 mg/kg, Sevo+DCS 100 mg/kg, and Sevo+DCS 200 mg/kg groups.	nt	95-125	nicotinamide nucleotide adenylyltransferase 1	Rattus norvegicus	72-80
31909710-3	2020	Mg-nucleotide binding to SUR1 stimulates KATP.	nt	0-13	ATP binding cassette subfamily C member 8	Homo sapiens	25-29
31897235-16	2020	De-methylation of cytosine from CpG di-nucleotides in AFP promoter may be the cause of AFP re-expression in adult human liver cancer tissue.	nt	32-50	alpha fetoprotein	Homo sapiens	54-57
31897235-16	2020	De-methylation of cytosine from CpG di-nucleotides in AFP promoter may be the cause of AFP re-expression in adult human liver cancer tissue.	nt	32-50	alpha fetoprotein	Homo sapiens	87-90
31646518-5	2020	Both are metabolites of pyridine nucleotides, and may be produced by the same class of enzymes, ADP-ribosyl cyclases, such as CD38.	nt	24-44	CD38 molecule	Homo sapiens	126-130
31650168-6	2019	We explain the paradox of the "missing" microhomology in the majority of FLT3-ITDs through occult microhomology: specifically, by priming through use of non-templated nucleotides (N-nucleotides) added by terminal deoxynucleotidyl transferase (TdT).	nt	180-193	fms related receptor tyrosine kinase 3	Homo sapiens	73-77
31650168-6	2019	We explain the paradox of the "missing" microhomology in the majority of FLT3-ITDs through occult microhomology: specifically, by priming through use of non-templated nucleotides (N-nucleotides) added by terminal deoxynucleotidyl transferase (TdT).	nt	180-193	DNA nucleotidylexotransferase	Homo sapiens	204-241
31650168-6	2019	We explain the paradox of the "missing" microhomology in the majority of FLT3-ITDs through occult microhomology: specifically, by priming through use of non-templated nucleotides (N-nucleotides) added by terminal deoxynucleotidyl transferase (TdT).	nt	180-193	DNA nucleotidylexotransferase	Homo sapiens	243-246
31650168-11	2019	While the physiological role of TdT is to increase antigenic diversity through N-nucleotide addition during V(D)J recombination of IG/TCR genes, here we propose that illegitimate TdT activity makes a significant contribution to the genesis of AML.	nt	79-91	DNA nucleotidylexotransferase	Homo sapiens	32-35
31722405-7	2019	We present structures of the Candida Trl1 KIN domain at 1.5 to 2.0 A resolution-as apoenzyme and in complexes with GTP Mg2+, IDP PO4, and dGDP PO4-that highlight conformational switches in the G-loop (which recognizes the guanine base) and lid-loop (poised over the nucleotide phosphates) that accompany nucleotide binding.	nt	266-287	tRNA-Leu (anticodon AAG) 2-3	Homo sapiens	37-41
30590163-5	2019	We further observed that the relative expressions of mucin, claudin16, occlusin1, hepcidin, defensin beta-like, myeloperoxidase (Mpo), and serum amyloid A (Saa) increased in the 0.1% NT group compared with control (P < 0.05), indicating that dietary nucleotides enhanced the physical barrier and mucosal immunity in the intestine of zebrafish.	nt	183-185	serum amyloid A	Danio rerio	156-159
31616187-2	2019	Nicotinamide nucleotide transhydrogenase antisense RNA 1 (lncRNA NNT-AS1) is up-regulated in some human tumors and functions as a tumor promoter.	nt	0-23	NNT antisense RNA 1	Homo sapiens	65-72
30590163-7	2019	Furthermore, dietary NT significantly elevated the relative expressions of mpo, saa and the ROS activity in germ-free zebrafish, while germ-free zebrafish colonized with NT-altered microbiota had no significant difference in the relative expressions of mpo, saa and the ROS activity compared with the control microbiota-colonized fish, suggesting that the immunostimulatory effect of dietary NT is mediated by direct action of NT and does not involve the microbiota.	nt	21-23	myeloid-specific peroxidase	Danio rerio	75-78
30590163-7	2019	Furthermore, dietary NT significantly elevated the relative expressions of mpo, saa and the ROS activity in germ-free zebrafish, while germ-free zebrafish colonized with NT-altered microbiota had no significant difference in the relative expressions of mpo, saa and the ROS activity compared with the control microbiota-colonized fish, suggesting that the immunostimulatory effect of dietary NT is mediated by direct action of NT and does not involve the microbiota.	nt	21-23	serum amyloid A	Danio rerio	80-83
30590163-7	2019	Furthermore, dietary NT significantly elevated the relative expressions of mpo, saa and the ROS activity in germ-free zebrafish, while germ-free zebrafish colonized with NT-altered microbiota had no significant difference in the relative expressions of mpo, saa and the ROS activity compared with the control microbiota-colonized fish, suggesting that the immunostimulatory effect of dietary NT is mediated by direct action of NT and does not involve the microbiota.	nt	21-23	endothelin receptor Ba	Danio rerio	92-95
30590163-7	2019	Furthermore, dietary NT significantly elevated the relative expressions of mpo, saa and the ROS activity in germ-free zebrafish, while germ-free zebrafish colonized with NT-altered microbiota had no significant difference in the relative expressions of mpo, saa and the ROS activity compared with the control microbiota-colonized fish, suggesting that the immunostimulatory effect of dietary NT is mediated by direct action of NT and does not involve the microbiota.	nt	21-23	myeloid-specific peroxidase	Danio rerio	253-256
30590163-7	2019	Furthermore, dietary NT significantly elevated the relative expressions of mpo, saa and the ROS activity in germ-free zebrafish, while germ-free zebrafish colonized with NT-altered microbiota had no significant difference in the relative expressions of mpo, saa and the ROS activity compared with the control microbiota-colonized fish, suggesting that the immunostimulatory effect of dietary NT is mediated by direct action of NT and does not involve the microbiota.	nt	21-23	serum amyloid A	Danio rerio	258-261
30590163-7	2019	Furthermore, dietary NT significantly elevated the relative expressions of mpo, saa and the ROS activity in germ-free zebrafish, while germ-free zebrafish colonized with NT-altered microbiota had no significant difference in the relative expressions of mpo, saa and the ROS activity compared with the control microbiota-colonized fish, suggesting that the immunostimulatory effect of dietary NT is mediated by direct action of NT and does not involve the microbiota.	nt	21-23	endothelin receptor Ba	Danio rerio	270-273
29762710-3	2018	After locating the lesions, TDG employs a base-flipping strategy to recognize the damaged nucleobases, whereby the interrogated nt is extruded from the DNA helical stack and binds into the TDG active site.	nt	116-118	thymine DNA glycosylase	Homo sapiens	28-31
29762710-3	2018	After locating the lesions, TDG employs a base-flipping strategy to recognize the damaged nucleobases, whereby the interrogated nt is extruded from the DNA helical stack and binds into the TDG active site.	nt	116-118	thymine DNA glycosylase	Homo sapiens	189-192
29330301-4	2018	Based on biochemical and structural studies, we propose a role for Rev1 and Poliota in inserting a nucleotide (nt) opposite the adduct and for Pols eta and kappa in extending synthesis from the inserted nt in the respective TLS pathway.	nt	111-113	REV1 DNA directed polymerase	Homo sapiens	67-71