PMID-sentid	Pub_year	Sent_text	compound_name	comp_offset	prot_official_name	organism	prot_offset
15117938-3	2004	Here we show that a 73-amino acid peptide spanning the TTP zinc finger domain, denoted TTP73, forms a dynamic, equimolar RNA.peptide complex with a 13-nucleotide fragment of the ARE from tumor necrosis factor alpha mRNA, which includes small but significant contributions from ionic interactions.	13-nucleotide	148-161	ZFP36 ring finger protein	Homo sapiens	55-58
17537856-11	2007	The L-5" UTR contained two 13-nucleotide-long complete complementary sequences, and their sequence complementarities were important for L mRNA termination.	13-nucleotide	27-40	ribosomal protein L5	Homo sapiens	4-7
9052988-10	1996	Methylation interference and competition gel shift assays mapped a unique 13-nucleotide sequence delineating a novel TGF-beta cis-regulatory element.	13-nucleotide	74-87	transforming growth factor beta 1	Homo sapiens	117-125
14670999-5	2004	A 5" deletion series of the Dlx3 promoter revealed that a 13-nucleotide CCAAT box-containing element was required for basal expression in choriocarcinoma cell lines.	13-nucleotide	58-71	distal-less homeobox 3	Homo sapiens	28-32
14525764-4	2004	To define the molecular mechanisms, we amplified from patient platelet RNA exons 3 to 6 of core-binding factor A2 (CBFA2) cDNA, which encompasses the DNA-binding Runt domain; a 13-nucleotide (nt) deletion was found (796-808 nt).	13-nucleotide	177-190	RUNX family transcription factor 1	Homo sapiens	91-113
14525764-4	2004	To define the molecular mechanisms, we amplified from patient platelet RNA exons 3 to 6 of core-binding factor A2 (CBFA2) cDNA, which encompasses the DNA-binding Runt domain; a 13-nucleotide (nt) deletion was found (796-808 nt).	13-nucleotide	177-190	RUNX family transcription factor 1	Homo sapiens	115-120
12646561-8	2003	As was established for dsx, the fruRE can be replaced by a short element encompassing tandem 13-nucleotide repeat elements, by heterologous splicing enhancers, and by artificially tethering a splicing activator to the pre-mRNA.	13-nucleotide	93-106	doublesex	Drosophila melanogaster	23-26
8382696-7	1993	A 13-nucleotide sequence, 13Inr (-4 to +9), which retains the NF-E1 binding activity but does not bind Sp1, was able to promote chloramphenicol acetyltransferase gene expression at levels similar to the 17Inr sequence, suggesting that NF-E1 factor binding is critical for initiator function.	13-nucleotide	2-15	YY1 transcription factor	Mus musculus	62-67
7929382-5	1994	After the formation of a 13-nucleotide transcript, Mtf1p is no longer associated with Rpo41p on the DNA.	13-nucleotide	25-38	RNA polymerase specificity factor	Saccharomyces cerevisiae S288C	51-56
8382696-7	1993	A 13-nucleotide sequence, 13Inr (-4 to +9), which retains the NF-E1 binding activity but does not bind Sp1, was able to promote chloramphenicol acetyltransferase gene expression at levels similar to the 17Inr sequence, suggesting that NF-E1 factor binding is critical for initiator function.	13-nucleotide	2-15	YY1 transcription factor	Mus musculus	235-240
2777781-1	1989	To better understand the mechanisms that determine cell type-specific gene expression, we have examined the transcriptional activity of a 13-nucleotide long sequence element, designated C3P, located in the promoter of the apoCIII gene.	13-nucleotide	138-151	apolipoprotein C3	Homo sapiens	222-229
1518835-2	1992	By transfection analyses using dsx minigene constructs, we identified six copies of the 13-nucleotide sequences TC(T/A)(T/A)C(A/G)ATCAACA in the female-specific fourth exon that act as the cis elements for the female-specific splicing of dsx pre-mRNA.	13-nucleotide	88-101	doublesex	Drosophila melanogaster	31-34
1518835-2	1992	By transfection analyses using dsx minigene constructs, we identified six copies of the 13-nucleotide sequences TC(T/A)(T/A)C(A/G)ATCAACA in the female-specific fourth exon that act as the cis elements for the female-specific splicing of dsx pre-mRNA.	13-nucleotide	88-101	doublesex	Drosophila melanogaster	238-241
1518835-3	1992	UV-crosslinking experiments revealed that both female-specific transformer (tra) and transformer-2 (tra-2) products bind to the 13-nucleotide sequences of dsx pre-mRNA.	13-nucleotide	128-141	transformer	Drosophila melanogaster	47-80
1518835-3	1992	UV-crosslinking experiments revealed that both female-specific transformer (tra) and transformer-2 (tra-2) products bind to the 13-nucleotide sequences of dsx pre-mRNA.	13-nucleotide	128-141	transformer 2	Drosophila melanogaster	85-98
1518835-3	1992	UV-crosslinking experiments revealed that both female-specific transformer (tra) and transformer-2 (tra-2) products bind to the 13-nucleotide sequences of dsx pre-mRNA.	13-nucleotide	128-141	transformer 2	Drosophila melanogaster	100-105
1518835-3	1992	UV-crosslinking experiments revealed that both female-specific transformer (tra) and transformer-2 (tra-2) products bind to the 13-nucleotide sequences of dsx pre-mRNA.	13-nucleotide	128-141	doublesex	Drosophila melanogaster	155-158
1518835-4	1992	These results strongly suggest that the female-specific splicing of dsx pre-mRNA is activated by binding of these proteins to the 13-nucleotide sequences.	13-nucleotide	130-143	doublesex	Drosophila melanogaster	68-71
25838544-4	2015	In TSA, a 13-nucleotide (nt) core motif is conserved across Drosophila species and is essential and sufficient for trans-splicing, which binds U1 small nuclear RNP (snRNP) through strong base-pairing with U1 snRNA.	13-nucleotide	10-23	small ribonucleoprotein particle U1 subunit 70K	Drosophila melanogaster	165-170
26676765-2	2016	Recently, the crystal structure of the TLR13 ectodomain bound by a 13-nucleotide single-stranded RNA (ssRNA13) was determined by using the initial phases provided by a cryo-electron microscopy map of TLR13 in complex with a 25-nucleotide ssRNA (ssRNA25).	13-nucleotide	67-80	toll-like receptor 13	Mus musculus	39-44
26676765-2	2016	Recently, the crystal structure of the TLR13 ectodomain bound by a 13-nucleotide single-stranded RNA (ssRNA13) was determined by using the initial phases provided by a cryo-electron microscopy map of TLR13 in complex with a 25-nucleotide ssRNA (ssRNA25).	13-nucleotide	67-80	toll-like receptor 13	Mus musculus	200-205