PMID-sentid	Pub_year	Sent_text		comp_official_name	comp_offsetprotein_name	organism	prot_offset
33182604-2	2020	The meso-diaminopimelic acid (meso-DAP) moiety is known to be very stringent in terms of the allowed structural modifications which still retain the NOD1 activity.	Diaminopimelic Acid	4-28	death associated protein	Homo sapiens	35-38	
18023379-2	2008	Most bacteria require either lysine, or its biosynthetic precursor, diaminopimelate (meso-DAP), as a component of the peptidoglycan layer of the cell wall.	Diaminopimelic Acid	68-83	death associated protein	Homo sapiens	90-93	
18023379-3	2008	In this paper, molecular modelling studies were undertaken in order to shed light on the molecular basis of interaction between (2S,6S)-diaminopimelic acid (l,l-DAP) (1) with its target enzyme DAP-epimerase, since this is a key step in the lysine biosynthetic path leading to (2R,6S)-diaminopimelic acid (meso-DAP) (2).	Diaminopimelic Acid	128-155	death associated protein	Homo sapiens	161-164	
18023379-3	2008	In this paper, molecular modelling studies were undertaken in order to shed light on the molecular basis of interaction between (2S,6S)-diaminopimelic acid (l,l-DAP) (1) with its target enzyme DAP-epimerase, since this is a key step in the lysine biosynthetic path leading to (2R,6S)-diaminopimelic acid (meso-DAP) (2).	Diaminopimelic Acid	128-155	death associated protein	Homo sapiens	193-196	
18023379-3	2008	In this paper, molecular modelling studies were undertaken in order to shed light on the molecular basis of interaction between (2S,6S)-diaminopimelic acid (l,l-DAP) (1) with its target enzyme DAP-epimerase, since this is a key step in the lysine biosynthetic path leading to (2R,6S)-diaminopimelic acid (meso-DAP) (2).	Diaminopimelic Acid	128-155	death associated protein	Homo sapiens	193-196	
16172124-1	2005	Nod1 is an intracellular pattern recognition molecule activated following bacterial infection, which senses a specific muropeptide (l-Ala-d-Glu-meso-DAP (diaminopimelic acid); "Tri(DAP)") from peptidoglycan.	Diaminopimelic Acid	154-173	death associated protein	Homo sapiens	149-152	
16172124-1	2005	Nod1 is an intracellular pattern recognition molecule activated following bacterial infection, which senses a specific muropeptide (l-Ala-d-Glu-meso-DAP (diaminopimelic acid); "Tri(DAP)") from peptidoglycan.	Diaminopimelic Acid	154-173	death associated protein	Homo sapiens	181-184	
18830984-2	2008	The PGN of Gram-negative bacteria and some Gram-positive bacteria contain meso-diaminopimelic acid (meso-DAP), and we have recently shown that the intracellular protein Nod1 is a PGN receptor and recognizes DAP-containing peptides.	Diaminopimelic Acid	74-98	death associated protein	Homo sapiens	105-108	
18830984-2	2008	The PGN of Gram-negative bacteria and some Gram-positive bacteria contain meso-diaminopimelic acid (meso-DAP), and we have recently shown that the intracellular protein Nod1 is a PGN receptor and recognizes DAP-containing peptides.	Diaminopimelic Acid	74-98	death associated protein	Homo sapiens	207-210	
15718249-4	2005	NOD1 is an intracellular PRR that initiates inflammation in response to bacterial diaminopimelic acid (iE-DAP).	Diaminopimelic Acid	82-101	death associated protein	Homo sapiens	106-109	
29233695-2	2018	meso-Diaminopimelic acid decarboxylase (DAPDC) catalyzes the final step in the de novol-lysine biosynthetic pathway by converting meso-diaminopimelic acid (meso-DAP) into l-lysine by decarboxylation reaction.	Diaminopimelic Acid	130-154	death associated protein	Homo sapiens	40-43	
32133861-1	2020	The syntheses of peptidoglycan (PG)-derived peptides containing meso-diaminopimelic acid (meso-Dap) are typically quite lengthy due to the need to prepare orthogonally protected meso-Dap.	Diaminopimelic Acid	64-88	death associated protein	Homo sapiens	95-98	
22218461-2	2012	Nuucleotide-binding oligomerization domain (NOD)1 and NOD2 recognize the peptidoglycan             derivatives, meso-diaminopimelic acid (meso-DAP) and muramyl dipeptide (MDP),             respectively, and trigger host innate immune responses.	Diaminopimelic Acid	112-136	death associated protein	Homo sapiens	143-146	
20816488-7	2010	The PGN of Gram-negative bacteria and some Gram-positive bacteria contain meso-diaminopimelic acid (meso-DAP), and recent studies have revealed that the intracellular receptor Nod1 recognizes DAP-containing peptides.	Diaminopimelic Acid	74-98	death associated protein	Homo sapiens	105-108	
20816488-7	2010	The PGN of Gram-negative bacteria and some Gram-positive bacteria contain meso-diaminopimelic acid (meso-DAP), and recent studies have revealed that the intracellular receptor Nod1 recognizes DAP-containing peptides.	Diaminopimelic Acid	74-98	death associated protein	Homo sapiens	192-195