PMID-sentid	Pub_year	Sent_text		comp_official_name	comp_offsetprotein_name	organism	prot_offset
21467031-4	2011	Here, we give evidence of a mechanism for the reverse reaction, namely dark reoxidation of protein-bound flavin in Arabidopsis thaliana cryptochrome (AtCRY1) by molecular oxygen that involves formation of a spin-correlated FADH( )-superoxide radical pair.	4,6-dinitro-o-cresol	105-111	cryptochrome 1	Arabidopsis thaliana	150-156	
19327354-3	2009	Here we show in purified preparations of Arabidopsis cry1 that ATP binding induces conformational change independently of light and increases the amount and stability of light-induced flavin radical formation.	4,6-dinitro-o-cresol	184-190	cryptochrome 1	Arabidopsis thaliana	53-57	
20031915-6	2008	We further show that cry1 protein expressed in living insect cells responds with greater sensitivity to 380 nm light than to 450 nm, consistent with a light-harvesting antenna pigment that transfers excitation energy to the oxidized flavin of cry1.	4,6-dinitro-o-cresol	233-239	cryptochrome 1	Arabidopsis thaliana	21-25	
20031915-6	2008	We further show that cry1 protein expressed in living insect cells responds with greater sensitivity to 380 nm light than to 450 nm, consistent with a light-harvesting antenna pigment that transfers excitation energy to the oxidized flavin of cry1.	4,6-dinitro-o-cresol	233-239	cryptochrome 1	Arabidopsis thaliana	243-247	
8232555-7	1993	As photolyases are a rare class of flavoprotein that catalyse blue-light-dependent reactions, the protein encoded by HY4 has a structure consistent with that of a flavin-type blue-light photoreceptor.	4,6-dinitro-o-cresol	163-169	cryptochrome 1	Arabidopsis thaliana	117-120	
27423124-2	2016	Photon absorption by Arabidopsis cryptochromes cry1 and cry2 initiates electron transfer to the oxidized flavin cofactor (FADox) and formation of the presumed biological signaling state FADH .	4,6-dinitro-o-cresol	105-111	cryptochrome 1	Arabidopsis thaliana	47-51	
27446119-2	2016	Arabidopsis cryptochromes (cry1 and cry2) absorb light through an oxidized flavin (FADox) cofactor which undergoes reduction to both FADH  and FADH(-) redox states.	4,6-dinitro-o-cresol	75-81	cryptochrome 1	Arabidopsis thaliana	27-31	
27446119-5	2016	Our model fits the experimental data for flavin photoconversion in vitro for both cry1 and cry2, providing calculated quantum yields which are significantly lower in cry1 than for cry2.	4,6-dinitro-o-cresol	41-47	cryptochrome 1	Arabidopsis thaliana	82-86	
27446119-5	2016	Our model fits the experimental data for flavin photoconversion in vitro for both cry1 and cry2, providing calculated quantum yields which are significantly lower in cry1 than for cry2.	4,6-dinitro-o-cresol	41-47	cryptochrome 1	Arabidopsis thaliana	166-170	
27020113-8	2016	For Arabidopsis thaliana cryptochrome 1 (AtCry1) we find that spin relaxation implies optimal radical pair lifetimes of the order of microseconds, and that flavin-Z  pairs are less affected by relaxation than flavin-tryptophan pairs.	4,6-dinitro-o-cresol	156-162	cryptochrome 1	Arabidopsis thaliana	41-47	
26649273-5	2015	This in vitro study extends earlier investigations of the oxidation of Arabidopsis cryptochrome1 by molecular oxygen and demonstrates that, under some conditions, a more complex model for oxidation of the flavin than was previously proposed is required to accommodate the spectral evidence (see P. Muller and M. Ahmad (2011) J. Biol.	4,6-dinitro-o-cresol	205-211	cryptochrome 1	Arabidopsis thaliana	83-96	
26313597-2	2015	In plants, cryptochrome (cry1, cry2) biological activity has been linked to flavin photoreduction via an electron transport chain to the protein surface comprising 3 evolutionarily conserved tryptophan residues known as the "Trp triad."	4,6-dinitro-o-cresol	76-82	cryptochrome 1	Arabidopsis thaliana	25-29	
25428980-2	2014	Plant cryptochrome (cry1 and cry2) biological activity has been linked to flavin photoreduction via an electron transport chain comprising three evolutionarily conserved tryptophan residues known as the Trp triad.	4,6-dinitro-o-cresol	74-80	cryptochrome 1	Arabidopsis thaliana	20-24