PMID-sentid	Pub_year	Sent_text		comp_official_name	comp_offsetprotein_name	organism	prot_offset
18720326-7	2008	The positive detection of the SYT-SSX1 fusion transcripts with reverse-transcription polymerase chain reaction in formalin-fixed and paraffin-embedded tissue confirmed the synovial sarcoma diagnosis.	Formaldehyde	114-122	synaptotagmin 1	Homo sapiens	30-33	
27126659-0	2016	Detection of SYT-SSX mutant transcripts in formalin-fixed paraffin-embedded sarcoma tissues using one-step reverse transcriptase real-time PCR.	Formaldehyde	43-51	synaptotagmin 1	Homo sapiens	13-16	
18333330-12	2008	In both cases, reverse transcription-polymerase chain reaction using ribonucleic acid extracted from formalin-fixed, paraffin-embedded tissues detected SYT-SSX 1 fusion gene transcripts, which are characteristic molecular findings of synovial sarcoma.	Formaldehyde	101-109	synaptotagmin 1	Homo sapiens	152-155	
15735574-6	2005	We also developed a method useful for RT-PCR SYT-SSX fusion transcript detection in formalin-fixed, paraffin-embedded tissue.	Formaldehyde	84-92	synaptotagmin 1	Homo sapiens	45-48	
11107054-5	2000	In the three cases, a reverse transcription-polymerase chain reaction (RT-PCR) using ribonucleic acid extracted from formalin-fixed, paraffin-embedded tissues detected SYT-SSX1 fusion gene transcripts resulting from translocation t(X;18)(p11.2;q11.2), which is specific for synovial sarcoma.	Formaldehyde	117-125	synaptotagmin 1	Homo sapiens	168-171	
15103201-5	2004	RESULT: A specific chimeric gene, the SSX-SYT fusion gene, was identified in the formalin-fixed paraffin-embedded surgical specimen using the reverse-transcription polymerase chain reaction (RT-PCR) technique.	Formaldehyde	81-89	synaptotagmin 1	Homo sapiens	42-45	
12150740-2	2002	METHODS: RT-PCR was used to amplify the SYT-SSX fusion transcripts using archival formalin-fixed paraffin-embedded tumor specimens from a series of 37 synovial sarcoma cases.	Formaldehyde	82-90	synaptotagmin 1	Homo sapiens	40-43	
11826189-3	2002	We have developed a real-time, reverse transcriptase-polymerase chain reaction (RT-PCR) multiplex assay for the identification of the primary fusion transcript types (SYT-SSX1 and SYT-SSX2) from formalin-fixed, paraffin-embedded (FFPE) tissues.	Formaldehyde	195-203	synaptotagmin 1	Homo sapiens	167-170	
11422798-6	2001	The SYT-SSX2 fusion transcripts were detected by a reverse transcription-polymerase chain reaction (RT-PCR) using RNA extracted from formalin-fixed, paraffin-embedded tissue.	Formaldehyde	133-141	synaptotagmin 1	Homo sapiens	4-7	
11561755-1	2001	In order to confirm the presence of SYT-SSX fusion gene in epithelial and spindle cell components of synovial sarcoma, we performed a nested reverse transcriptase-polymerase chain reaction (RT-PCR) using microbeam microdissection of membrane-mounted native tissue (MOMeNT) technique applied on formalin-fixed, paraffin-embedded tumor specimens from two biphasic synovial sarcomas and a control tissue of adamantinoma.	Formaldehyde	294-302	synaptotagmin 1	Homo sapiens	36-39	
10935650-9	2000	In both cases, reverse transcription-polymerase chain reaction using ribonucleic acid extracted from formalin-fixed, paraffin-embedded tissues detected SYT-SSX2 fusion gene transcripts, which are characteristic molecular findings of synovial sarcoma.	Formaldehyde	101-109	synaptotagmin 1	Homo sapiens	152-155	
9556426-1	1998	We report the development of a reverse-transcriptase polymerase chain reaction assay that detects (in paraffin-embedded, formalin-fixed tissue) the SYT-SSXchimeric RNA transcript resulting from the t(X;18) of synovial sarcoma.	Formaldehyde	121-129	synaptotagmin 1	Homo sapiens	148-151	
10217560-6	1999	In both cases, a reverse transcription-polymerase chain reaction using RNA extracted from formalin-fixed, paraffin-embedded tissues detected SYT-SSX fusion gene transcripts, which are characteristic of synovial sarcoma.	Formaldehyde	90-98	synaptotagmin 1	Homo sapiens	141-144	
9846971-2	1998	In this study, we conducted a reverse transcription-polymerase chain reaction-based assay to detect the SYT-SSX fusion gene transcripts using archival formalin-fixed, paraffin-embedded tumor specimens from a series of 32 synovial sarcoma cases including 6 tumors found in unusual anatomical sites.	Formaldehyde	151-159	synaptotagmin 1	Homo sapiens	104-107	
9688183-0	1998	Detection of the SYT-SSX fusion transcripts in formaldehyde-fixed, paraffin-embedded tissue: a reverse transcription polymerase chain reaction amplification assay useful in the diagnosis of synovial sarcoma.	Formaldehyde	47-59	synaptotagmin 1	Homo sapiens	17-20	
10889911-5	2000	These results indicate that SYT-SSX fusion transcripts are found in both epithelial and spindle cell areas of biphasic synovial sarcoma, and RT-DOP-PCR-PCR analysis is a useful method for detection of extremely small amounts of mRNA in microdissected samples from archival formalin fixed, paraffin wax embedded tumour tissues.	Formaldehyde	273-281	synaptotagmin 1	Homo sapiens	28-31	
32458628-0	2020	Exploring Two Protocols of FISH Using Cytocell SYT-SSX Probe on Formalin Fixed Paraffin Embedded Tissue Sections.	Formaldehyde	64-72	synaptotagmin 1	Homo sapiens	47-50