PMID-sentid Pub_year Sent_text comp_official_name comp_offsetprotein_name organism prot_offset 32991900-4 2020 Since the proteolytic cleavage of the S protein is critical for virus penetration into cells, a set of drugs, such as chloroquine, hydroxychloroquine, camostat mesylate have been tested in clinical trials to suppress this event. Hydroxychloroquine 131-149 surface glycoprotein Severe acute respiratory syndrome coronavirus 2 0-1 33679150-5 2021 In this study, we docked five clinically used drug molecules, favipiravir, hydroxychloroquine, remdesivir, lopinavir, and ritonavir onto three target proteins, the receptor-binding domain of SARS-CoV-2 spike protein, SARS-CoV-2 main protease, and human furin protease. Hydroxychloroquine 75-93 surface glycoprotein Severe acute respiratory syndrome coronavirus 2 202-207 32770567-7 2021 Moreover, out of three distinct binding sites (I, II and III) of spike core when HCQ binds only with site III (farthest from the nCoV-RBD of ACE2 contact), epigallocatechin gallate and theaflavin gallate bind all three sites. Hydroxychloroquine 81-84 surface glycoprotein Severe acute respiratory syndrome coronavirus 2 65-70 33535144-5 2021 In this study, we focused on identifying a more potent analogue of HCQ and CQ against the spike protein of SAR-CoV-2 that can act as an effective antiviral agent for COVID-19 treatment. Hydroxychloroquine 67-70 surface glycoprotein Severe acute respiratory syndrome coronavirus 2 90-95 33531790-12 2021 This finding was of particular importance that other compounds including hydroxychloroquine sulphate, lopinavir and ivermectin could bind with the spike protein only by weak Vander wall bonds and no hydrogen bond formation was noticed. Hydroxychloroquine 73-100 surface glycoprotein Severe acute respiratory syndrome coronavirus 2 147-152 32770567-0 2021 Epigallocatechin gallate and theaflavin gallate interaction in SARS-CoV-2 spike-protein central channel with reference to the hydroxychloroquine interaction: Bioinformatics and molecular docking study. Hydroxychloroquine 126-144 surface glycoprotein Severe acute respiratory syndrome coronavirus 2 74-79 32920291-0 2020 Chloroquine and hydroxychloroquine as ACE2 blockers to inhibit viropexis of 2019-nCoV Spike pseudotyped virus. Hydroxychloroquine 16-34 surface glycoprotein Severe acute respiratory syndrome coronavirus 2 86-91 35000060-5 2022 Molecular docking of HCQ under physiological condition with spike protein, 3C-like protease (3CLpro), and RNA-dependent RNA polymerase (RdRp) of SARS-CoV2 showed - 8.52 kcal/mole binding score with RdRp, while the other two proteins showed relatively weaker binding affinity. Hydroxychloroquine 21-24 surface glycoprotein Severe acute respiratory syndrome coronavirus 2 60-65 32562764-3 2020 Furthermore, it is emphasized that the viral spike protein is prevented from binding gangliosides, which are composed of a glycosphingolipid with one or more sialic acids, in the presence of chloroquine or hydroxychloroquine. Hydroxychloroquine 206-224 surface glycoprotein Severe acute respiratory syndrome coronavirus 2 45-50 32696720-2 2021 In this paper, we demonstrate how hydroxychloroquine can act as a good inhibitor of SARS-CoV-2 Spike protein receptor-binding-domain using molecular docking studies. Hydroxychloroquine 34-52 surface glycoprotein Severe acute respiratory syndrome coronavirus 2 95-100 32696720-3 2021 We also unveil how hydroxychloroquine can interfere in the prevention of Lys353 in hACE2 from interacting with the corresponding binding hotspot present on the Spike protein. Hydroxychloroquine 19-37 surface glycoprotein Severe acute respiratory syndrome coronavirus 2 160-165 34396938-3 2021 Thus, the goal is to investigate the dynamic nature of HCQ derivatives against SARS-CoV-2 main protease and spike proteins. Hydroxychloroquine 55-58 surface glycoprotein Severe acute respiratory syndrome coronavirus 2 108-113 34337036-8 2021 Then, by determining the activity of ACE2, we reveal that the interaction with the spike protein of SARS-CoV-2 leads to structural changes that at least partially displace the interaction of the said enzyme with HCQ. Hydroxychloroquine 212-215 surface glycoprotein Severe acute respiratory syndrome coronavirus 2 83-88