PMID-sentid	Pub_year	Sent_text		comp_official_name	comp_offsetprotein_name	organism	prot_offset
17082457-2	2006	We identified a mammalian protein, protrudin, that promoted neurite formation through interaction with the guanosine diphosphate (GDP)-bound form of Rab11.	Guanosine Diphosphate	107-128	RAB11A, member RAS oncogene family	Homo sapiens	149-154	
18983266-5	2009	Pull-down and immunoprecipitation assays revealed that the beta2AR interacts preferentially with the GDP-bound form of Rab11.	Guanosine Diphosphate	101-104	RAB11A, member RAS oncogene family	Homo sapiens	119-124	
17082457-2	2006	We identified a mammalian protein, protrudin, that promoted neurite formation through interaction with the guanosine diphosphate (GDP)-bound form of Rab11.	Guanosine Diphosphate	130-133	RAB11A, member RAS oncogene family	Homo sapiens	149-154	
16354700-3	2006	In this study, we demonstrated the direct and specific interaction of GDP-bound Rab11a with TRPV5 and TRPV6.	Guanosine Diphosphate	70-73	RAB11A, member RAS oncogene family	Homo sapiens	80-86	
16354700-8	2006	Rab11a exerts this function in a novel fashion, since it operates via direct cargo interaction while in the GDP-bound configuration.	Guanosine Diphosphate	108-111	RAB11A, member RAS oncogene family	Homo sapiens	0-6	
16214890-6	2005	Knockdown of rab11a or overexpression of the rab11a-GDP locked form prevented canalicular formation as did overexpression of the myosin Vb motorless tail domain.	Guanosine Diphosphate	52-55	RAB11A, member RAS oncogene family	Homo sapiens	45-51	
16126723-8	2005	Interestingly, our data indicate that TPbeta interacts with the GDP-bound form, and not the GTP-bound form, of Rab11 which is necessary for recycling of the receptor back to the cell surface.	Guanosine Diphosphate	64-67	RAB11A, member RAS oncogene family	Homo sapiens	111-116	
15173169-5	2004	We also show that, although FIPs interact with the GDP-bound form of Rab11 in vitro, the binding affinity (>1000 nm) is not sufficient for FIP and GDP-bound Rab11 interactions to occur in vivo.	Guanosine Diphosphate	51-54	RAB11A, member RAS oncogene family	Homo sapiens	69-74	
15837192-3	2005	Here we report the high-resolution crystal structure of a small GTP binding protein, Rab11, solved in complex with GDP and Pi.	Guanosine Diphosphate	115-118	RAB11A, member RAS oncogene family	Homo sapiens	85-90	
29874286-7	2018	After identifying the binding sites and the residue interaction networks in the representatives, we computationally showed that these binding sites may allosterically regulate Rab11, as these sites communicate with switch 2 region that binds to GTP/GDP.	Guanosine Diphosphate	249-252	RAB11A, member RAS oncogene family	Homo sapiens	176-181	
14699104-0	2004	The structural GDP/GTP cycle of Rab11 reveals a novel interface involved in the dynamics of recycling endosomes.	Guanosine Diphosphate	15-18	RAB11A, member RAS oncogene family	Homo sapiens	32-37	
14699104-2	2004	Here we report the crystallographic analysis of the GDP/GTP cycle of human Rab11a, and a structure-based mutagenesis study that identifies a novel mutant phenotype.	Guanosine Diphosphate	52-55	RAB11A, member RAS oncogene family	Homo sapiens	75-81	
14699104-4	2004	In Rab11-GDP, they contribute to a close packed symmetrical dimer, which may associate to membranes in the cell and allow Rab11 to undergo GDP/GTP cycles without recycling to the cytosol.	Guanosine Diphosphate	9-12	RAB11A, member RAS oncogene family	Homo sapiens	3-8	
14699104-4	2004	In Rab11-GDP, they contribute to a close packed symmetrical dimer, which may associate to membranes in the cell and allow Rab11 to undergo GDP/GTP cycles without recycling to the cytosol.	Guanosine Diphosphate	9-12	RAB11A, member RAS oncogene family	Homo sapiens	122-127	
14699104-4	2004	In Rab11-GDP, they contribute to a close packed symmetrical dimer, which may associate to membranes in the cell and allow Rab11 to undergo GDP/GTP cycles without recycling to the cytosol.	Guanosine Diphosphate	139-142	RAB11A, member RAS oncogene family	Homo sapiens	3-8	
14699104-4	2004	In Rab11-GDP, they contribute to a close packed symmetrical dimer, which may associate to membranes in the cell and allow Rab11 to undergo GDP/GTP cycles without recycling to the cytosol.	Guanosine Diphosphate	139-142	RAB11A, member RAS oncogene family	Homo sapiens	122-127	
30872413-7	2019	SH3BP5 pulls out and deforms switch I of Rab11a so as to facilitate the GDP release from Rab11a.	Guanosine Diphosphate	72-75	RAB11A, member RAS oncogene family	Homo sapiens	41-47	
30872413-7	2019	SH3BP5 pulls out and deforms switch I of Rab11a so as to facilitate the GDP release from Rab11a.	Guanosine Diphosphate	72-75	RAB11A, member RAS oncogene family	Homo sapiens	89-95	
25138214-6	2014	Expression of GDP-trapped Rab11a-S25N inhibited secretion exclusively from the VAMP8 but not the VAMP2 pathway.	Guanosine Diphosphate	14-17	RAB11A, member RAS oncogene family	Homo sapiens	26-32	
26767484-5	2016	Further analysis revealed that the stability of Rab11A S25N is dependent on the occupation of GDP in the nucleotide binding pocket of the protein.	Guanosine Diphosphate	94-97	RAB11A, member RAS oncogene family	Homo sapiens	48-54	
26767484-6	2016	We found that the stability of Rab11A S25N is affected by the presence of GDP, not other nucleotides, and is independent of pH or salt in FPLC buffer.	Guanosine Diphosphate	74-77	RAB11A, member RAS oncogene family	Homo sapiens	31-37	
26756197-6	2016	Structures of PI4KIIIbeta in an Apo state and bound to the potent inhibitor BQR695 in complex with both GTPgammaS and GDP loaded Rab11 were determined.	Guanosine Diphosphate	118-121	RAB11A, member RAS oncogene family	Homo sapiens	129-134	
20861389-7	2010	The coexpression of the GDP-bound Rab11 S25N mutant prevented the GBP-induced decrease in alpha2delta-2 cell surface levels, both in cell lines and in primary neurons, and the GBP-induced reduction in calcium channel currents.	Guanosine Diphosphate	24-27	RAB11A, member RAS oncogene family	Homo sapiens	34-39	
20534835-13	2010	Expression of the truncated Rab11a effector (FIP2DeltaC2) attenuates endogenous Rab11 function and prevented AMPH-induced NET internalization as does GDP-locked Rab4 S22N.	Guanosine Diphosphate	150-153	RAB11A, member RAS oncogene family	Homo sapiens	28-34	
20534835-13	2010	Expression of the truncated Rab11a effector (FIP2DeltaC2) attenuates endogenous Rab11 function and prevented AMPH-induced NET internalization as does GDP-locked Rab4 S22N.	Guanosine Diphosphate	150-153	RAB11A, member RAS oncogene family	Homo sapiens	28-33