PMID-sentid Pub_year Sent_text comp_official_name comp_offsetprotein_name organism prot_offset 35458513-3 2022 Accordingly, point mutations that result in an increase in electropositively charged residues, e.g., arginine and lysine, especially in the RBD of spike proteins in the SARS-CoV-2 variants, could contribute to their spreading capacity by favoring their recognition by the electronegatively charged ACE2 receptors. Lysine 114-120 surface glycoprotein Severe acute respiratory syndrome coronavirus 2 147-152 33857328-5 2021 Also, a new prophylactic and therapeutic measure against SARS-CoV-2 using acetoacetate is proposed, suggesting that it could similarly break the viral spike through Schiff base reaction with lysines of the spike protein. Lysine 191-198 surface glycoprotein Severe acute respiratory syndrome coronavirus 2 151-156 33857328-5 2021 Also, a new prophylactic and therapeutic measure against SARS-CoV-2 using acetoacetate is proposed, suggesting that it could similarly break the viral spike through Schiff base reaction with lysines of the spike protein. Lysine 191-198 surface glycoprotein Severe acute respiratory syndrome coronavirus 2 206-211 33583954-2 2021 The results of molecular docking positioned four molecules at the interaction site Tyr-491(Spike)-Glu-37(ACE2) and one at the site Gly-488(Spike)-Lys-353(ACE2). Lysine 146-149 surface glycoprotein Severe acute respiratory syndrome coronavirus 2 139-144 33532796-3 2021 The glutamate (E) to Lysine (K) substitution at position 484 (E484K) in the receptor binding domain (RBD) of the spike protein is present in the rapidly spreading variants of concern belonging to the B.1.351 and P.1 lineages. Lysine 21-27 surface glycoprotein Severe acute respiratory syndrome coronavirus 2 113-118 32955901-10 2020 Phenylalanine, tyrosine, glycine, lysine, and aspartic acid were found to be the headliner amino acids in the interactions between Arbidol and binding domains of spike glycoproteins in the SARS-CoV2 (Tab. Lysine 34-40 surface glycoprotein Severe acute respiratory syndrome coronavirus 2 162-167 34722943-4 2021 SARS-CoV-2 S protein binds to neuropilin-1 (NRP1) by virtue of a CendR motif which terminates with either an arginine or lysine. Lysine 121-127 surface glycoprotein Severe acute respiratory syndrome coronavirus 2 11-12 35321335-4 2022 The computational analysis, considering the case in which all the lysine residues in the system are subjected to non-enzymatic glycation, confirmed that lysine glycation causes a general loss of interactivity between wild-type (WT)-Spike-RBD and ACE2. Lysine 66-72 surface glycoprotein Severe acute respiratory syndrome coronavirus 2 232-237 35321335-4 2022 The computational analysis, considering the case in which all the lysine residues in the system are subjected to non-enzymatic glycation, confirmed that lysine glycation causes a general loss of interactivity between wild-type (WT)-Spike-RBD and ACE2. Lysine 153-159 surface glycoprotein Severe acute respiratory syndrome coronavirus 2 232-237