PMID-sentid Pub_year Sent_text compound_name comp_offset prot_official_name organism prot_offset 33968333-7 2021 Docking studies using GlycoTorch Vina and subsequent MD simulations of the spike trimer in the presence of dodecasaccharides of the GAGs heparin and heparan sulfate supported this possibility. dodecasaccharides 107-124 surface glycoprotein Severe acute respiratory syndrome coronavirus 2 75-80 35420777-2 2022 Here, we report the synthesis of a library of seven structurally homogeneous HS and CS chimeric dodecasaccharides (12-mers). dodecasaccharides 96-113 citrate synthase Homo sapiens 84-86 16624894-10 2006 Decasaccharides and dodecasaccharides containing one or two GalNAc4,6SO3 residues stimulated thrombin inhibition by HCII and prolonged the clotting time of normal but not HCII-depleted human plasma. dodecasaccharides 20-37 coagulation factor II, thrombin Homo sapiens 93-101 27287227-10 2016 We confirmed that the minimum structure binding to rVAR2 is a tri-sulfated CSA dodecasaccharide, and found that a highly sulfated CSA eicosasaccharide is a more potent inhibitor of rVAR2 binding than the dodecasaccharides. dodecasaccharides 204-221 chorionic somatomammotropin hormone 1 Homo sapiens 130-133 24242364-7 2014 In the current work, we used molecular docking of Hep-II domain of fibronectin with a series of differently sulfated dodecasaccharides of heparin to determine the implication of each sulfate position in the interaction. dodecasaccharides 117-134 fibronectin 1 Homo sapiens 67-78 16624894-10 2006 Decasaccharides and dodecasaccharides containing one or two GalNAc4,6SO3 residues stimulated thrombin inhibition by HCII and prolonged the clotting time of normal but not HCII-depleted human plasma. dodecasaccharides 20-37 serpin family D member 1 Homo sapiens 116-120 16624894-10 2006 Decasaccharides and dodecasaccharides containing one or two GalNAc4,6SO3 residues stimulated thrombin inhibition by HCII and prolonged the clotting time of normal but not HCII-depleted human plasma. dodecasaccharides 20-37 serpin family D member 1 Homo sapiens 171-175 8344303-5 1993 One of the dodecasaccharides is a tetrafucosyl derivative with a new core: typeI-(beta 1-3)-typeII-(beta 1-3)-typeII-(beta 1-3)-Gal((beta 1-4)Glc, where typeI = Gal(beta 1-3)GlcNAc and typeII = Gal(beta 1-4)GlcNAc. dodecasaccharides 11-28 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2 Homo sapiens 82-90 8344303-5 1993 One of the dodecasaccharides is a tetrafucosyl derivative with a new core: typeI-(beta 1-3)-typeII-(beta 1-3)-typeII-(beta 1-3)-Gal((beta 1-4)Glc, where typeI = Gal(beta 1-3)GlcNAc and typeII = Gal(beta 1-4)GlcNAc. dodecasaccharides 11-28 eukaryotic translation elongation factor 1 beta 2 pseudogene 2 Homo sapiens 100-108 8344303-5 1993 One of the dodecasaccharides is a tetrafucosyl derivative with a new core: typeI-(beta 1-3)-typeII-(beta 1-3)-typeII-(beta 1-3)-Gal((beta 1-4)Glc, where typeI = Gal(beta 1-3)GlcNAc and typeII = Gal(beta 1-4)GlcNAc. dodecasaccharides 11-28 eukaryotic translation elongation factor 1 beta 2 pseudogene 2 Homo sapiens 100-108 8344303-5 1993 One of the dodecasaccharides is a tetrafucosyl derivative with a new core: typeI-(beta 1-3)-typeII-(beta 1-3)-typeII-(beta 1-3)-Gal((beta 1-4)Glc, where typeI = Gal(beta 1-3)GlcNAc and typeII = Gal(beta 1-4)GlcNAc. dodecasaccharides 11-28 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2 Homo sapiens 82-88 8344303-5 1993 One of the dodecasaccharides is a tetrafucosyl derivative with a new core: typeI-(beta 1-3)-typeII-(beta 1-3)-typeII-(beta 1-3)-Gal((beta 1-4)Glc, where typeI = Gal(beta 1-3)GlcNAc and typeII = Gal(beta 1-4)GlcNAc. dodecasaccharides 11-28 eukaryotic translation elongation factor 1 beta 2 pseudogene 2 Homo sapiens 100-108 8344303-5 1993 One of the dodecasaccharides is a tetrafucosyl derivative with a new core: typeI-(beta 1-3)-typeII-(beta 1-3)-typeII-(beta 1-3)-Gal((beta 1-4)Glc, where typeI = Gal(beta 1-3)GlcNAc and typeII = Gal(beta 1-4)GlcNAc. dodecasaccharides 11-28 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2 Homo sapiens 100-106