PMID-sentid	Pub_year	Sent_text	compound_name	comp_offset	prot_official_name	organism	prot_offset
27399963-0	2017	The Arabidopsis thaliana lectin receptor kinase LecRK-I.9 is required for full resistance to Pseudomonas syringae and affects jasmonate signalling.	jasmonic acid	126-135	Concanavalin A-like lectin protein kinase family protein	Arabidopsis thaliana	48-57
28860478-8	2017	Further analysis of arabidopsis histidine phosphotransfer protein6-1 and myc2-3 mutants revealed that the JA-responsive transcription factor MYC2 regulates the expression of AHP6 in response to JA and expression of AHP6 is involved in the JA-mediated xylem phenotype.	jasmonic acid	106-108	Basic helix-loop-helix (bHLH) DNA-binding family protein	Arabidopsis thaliana	73-79
28860478-8	2017	Further analysis of arabidopsis histidine phosphotransfer protein6-1 and myc2-3 mutants revealed that the JA-responsive transcription factor MYC2 regulates the expression of AHP6 in response to JA and expression of AHP6 is involved in the JA-mediated xylem phenotype.	jasmonic acid	106-108	Basic helix-loop-helix (bHLH) DNA-binding family protein	Arabidopsis thaliana	141-145
28860478-8	2017	Further analysis of arabidopsis histidine phosphotransfer protein6-1 and myc2-3 mutants revealed that the JA-responsive transcription factor MYC2 regulates the expression of AHP6 in response to JA and expression of AHP6 is involved in the JA-mediated xylem phenotype.	jasmonic acid	106-108	histidine phosphotransfer protein 6	Arabidopsis thaliana	174-178
28860478-8	2017	Further analysis of arabidopsis histidine phosphotransfer protein6-1 and myc2-3 mutants revealed that the JA-responsive transcription factor MYC2 regulates the expression of AHP6 in response to JA and expression of AHP6 is involved in the JA-mediated xylem phenotype.	jasmonic acid	106-108	histidine phosphotransfer protein 6	Arabidopsis thaliana	215-219
28837631-1	2017	Previous studies have identified the Arabidopsis thaliana transcription factor WRKY70 as a node of convergence for salicylic acid (SA) and jasmonic acid (JA)-mediated defense signal pathways and, together with its closest homolog WRKY54, as a negative regulator of SA biosynthesis.	jasmonic acid	139-152	WRKY DNA-binding protein 70	Arabidopsis thaliana	79-85
28837631-1	2017	Previous studies have identified the Arabidopsis thaliana transcription factor WRKY70 as a node of convergence for salicylic acid (SA) and jasmonic acid (JA)-mediated defense signal pathways and, together with its closest homolog WRKY54, as a negative regulator of SA biosynthesis.	jasmonic acid	154-156	WRKY DNA-binding protein 70	Arabidopsis thaliana	79-85
28835689-7	2017	Specially, NOG1-2 regulates guard cell signaling in response to biotic and abiotic stimuli through jasmonic acid (JA)- and abscisic acid (ABA)-mediated pathways.	jasmonic acid	99-112	GTP binding protein 4	Homo sapiens	11-15
28835689-7	2017	Specially, NOG1-2 regulates guard cell signaling in response to biotic and abiotic stimuli through jasmonic acid (JA)- and abscisic acid (ABA)-mediated pathways.	jasmonic acid	114-116	GTP binding protein 4	Homo sapiens	11-15
28733419-2	2017	We show that the basic helix-loop-helix transcription factor (TF) MYC2 in tomato (Solanum lycopersicum) acts downstream of the JA receptor to orchestrate JA-mediated activation of both the wounding and pathogen responses.	jasmonic acid	127-129	transcription factor MYC2	Solanum lycopersicum	66-70
28742872-8	2017	The enhanced resistance observed on leaves following the silencing of TaWRKY49 was coupled with increased expression of salicylic acid (SA)- and jasmonic acid (JA)-responsive genes TaPR1.1 and TaAOS, as well as reactive oxygen species (ROS)-associated genes TaCAT and TaPOD; whereas the ethylene (ET)-responsive gene TaPIE1 was suppressed.	jasmonic acid	160-162	allene oxide synthase 2	Triticum aestivum	181-198
28554842-0	2017	Jasmonate-induced biosynthesis of steroidal glycoalkaloids depends on COI1 proteins in tomato.	jasmonic acid	0-9	coronatine-insensitive 1	Solanum lycopersicum	70-74
28716048-0	2017	Transcriptome analysis uncovers Arabidopsis F-BOX STRESS INDUCED 1 as a regulator of jasmonic acid and abscisic acid stress gene expression.	jasmonic acid	85-98	F-box family protein	Arabidopsis thaliana	44-66
28716048-8	2017	Based on both this genome-wide expression data set and quantitative real-time PCR (qPCR) analysis, it is apparent that FBS1 is required for elevated expression of many jasmonic acid (JA) genes that have established roles in combatting environmental stresses, and that it also controls a subset of JA biosynthesis genes.	jasmonic acid	168-181	F-box family protein	Arabidopsis thaliana	119-123
28716048-8	2017	Based on both this genome-wide expression data set and quantitative real-time PCR (qPCR) analysis, it is apparent that FBS1 is required for elevated expression of many jasmonic acid (JA) genes that have established roles in combatting environmental stresses, and that it also controls a subset of JA biosynthesis genes.	jasmonic acid	183-185	F-box family protein	Arabidopsis thaliana	119-123
28716048-8	2017	Based on both this genome-wide expression data set and quantitative real-time PCR (qPCR) analysis, it is apparent that FBS1 is required for elevated expression of many jasmonic acid (JA) genes that have established roles in combatting environmental stresses, and that it also controls a subset of JA biosynthesis genes.	jasmonic acid	297-299	F-box family protein	Arabidopsis thaliana	119-123
28716048-14	2017	Finally, because FBS1 regulates a subset of JA biosynthesis and response genes, we conclude that it might have a role in tuning hormone responses to particular circumstances at the transcriptional level.	jasmonic acid	44-46	F-box family protein	Arabidopsis thaliana	17-21
28299960-3	2017	In this study, the function of Oryza sativa SARD1 (OsSARD1) was investigated after exposure of seeds/plants to ionizing radiation, jasmonic acid (JA) or salicylic acid (SA).	jasmonic acid	131-144	Calmodulin binding protein-like protein	Arabidopsis thaliana	44-49
28299960-3	2017	In this study, the function of Oryza sativa SARD1 (OsSARD1) was investigated after exposure of seeds/plants to ionizing radiation, jasmonic acid (JA) or salicylic acid (SA).	jasmonic acid	146-148	Calmodulin binding protein-like protein	Arabidopsis thaliana	44-49
28550149-3	2017	Here, we found that JA-induced ethylene production in apple fruit is dependent on the expression of MdACS1, an ACC synthase gene involved in ethylene biosynthesis.	jasmonic acid	20-22	1-aminocyclopropane-1-carboxylate synthase 7-like	Malus domestica	111-123
28652328-3	2017	Here, we report that ABA and JA mediate inactivation of the immune-associated MAP kinases (MAPKs), MPK3 and MPK6, in Arabidopsis thaliana ABA induced expression of genes encoding the protein phosphatases 2C (PP2Cs), HAI1, HAI2, and HAI3 through ABF/AREB transcription factors.	jasmonic acid	29-31	mitogen-activated protein kinase 3	Arabidopsis thaliana	99-103
28652328-3	2017	Here, we report that ABA and JA mediate inactivation of the immune-associated MAP kinases (MAPKs), MPK3 and MPK6, in Arabidopsis thaliana ABA induced expression of genes encoding the protein phosphatases 2C (PP2Cs), HAI1, HAI2, and HAI3 through ABF/AREB transcription factors.	jasmonic acid	29-31	MAP kinase 6	Arabidopsis thaliana	108-112
28652328-3	2017	Here, we report that ABA and JA mediate inactivation of the immune-associated MAP kinases (MAPKs), MPK3 and MPK6, in Arabidopsis thaliana ABA induced expression of genes encoding the protein phosphatases 2C (PP2Cs), HAI1, HAI2, and HAI3 through ABF/AREB transcription factors.	jasmonic acid	29-31	PP2C protein (Clade A protein phosphatases type 2C)	Arabidopsis thaliana	216-220
28652328-3	2017	Here, we report that ABA and JA mediate inactivation of the immune-associated MAP kinases (MAPKs), MPK3 and MPK6, in Arabidopsis thaliana ABA induced expression of genes encoding the protein phosphatases 2C (PP2Cs), HAI1, HAI2, and HAI3 through ABF/AREB transcription factors.	jasmonic acid	29-31	highly ABA-induced PP2C protein 2	Arabidopsis thaliana	222-226
28652328-3	2017	Here, we report that ABA and JA mediate inactivation of the immune-associated MAP kinases (MAPKs), MPK3 and MPK6, in Arabidopsis thaliana ABA induced expression of genes encoding the protein phosphatases 2C (PP2Cs), HAI1, HAI2, and HAI3 through ABF/AREB transcription factors.	jasmonic acid	29-31	highly ABA-induced PP2C protein 3	Arabidopsis thaliana	232-236
28652328-9	2017	Intriguingly, upon ETI activation, A. thaliana plants overcame the HAI1-dependent virulence of COR by blocking JA signaling.	jasmonic acid	111-113	PP2C protein (Clade A protein phosphatases type 2C)	Arabidopsis thaliana	67-71
28981781-7	2017	Whereas mutations in the benzoxazinoid biosynthesis pathway (Bx1 and Bx2) significantly improved caterpillar growth, the knockout of a 13-lipoxygenase (Lox8) involved in jasmonic acid biosynthesis did not.	jasmonic acid	170-183	linoleate 13S-lipoxygenase8	Zea mays	152-156
28659948-5	2017	Since then, MED25 has been implicated in a range of other plant functions that vary from hormone signaling (JA, ABA, ethylene, and IAA) to biotic and abiotic stress tolerance and plant development.	jasmonic acid	108-110	mediator complex subunit 25	Homo sapiens	12-17
28534718-4	2017	The molecular basis underlying this phenotype is that jasmonate treatment reduces the biochemical activity of CONSTITUTIVE PHOTOMORPHOGENIC 1 (COP1) to stabilize several COP1-targetted transcription factors for eliciting a proportion of light responsive transcriptome.	jasmonic acid	54-63	Transducin/WD40 repeat-like superfamily protein	Arabidopsis thaliana	110-141
28534718-4	2017	The molecular basis underlying this phenotype is that jasmonate treatment reduces the biochemical activity of CONSTITUTIVE PHOTOMORPHOGENIC 1 (COP1) to stabilize several COP1-targetted transcription factors for eliciting a proportion of light responsive transcriptome.	jasmonic acid	54-63	Transducin/WD40 repeat-like superfamily protein	Arabidopsis thaliana	143-147
28534718-4	2017	The molecular basis underlying this phenotype is that jasmonate treatment reduces the biochemical activity of CONSTITUTIVE PHOTOMORPHOGENIC 1 (COP1) to stabilize several COP1-targetted transcription factors for eliciting a proportion of light responsive transcriptome.	jasmonic acid	54-63	Transducin/WD40 repeat-like superfamily protein	Arabidopsis thaliana	170-174
28536144-5	2017	Transgenic Arabidopsis thaliana plants deficient in UBP12 and UBP13 show accelerated decay of MYC2 and are hyposensitive to JA, whereas plants overexpressing UBP12 or UBP13 have prolonged MYC2 half-life and are hypersensitive to JA Our results suggest that there is a genetic link between UBP12, UBP13, and MYC2.	jasmonic acid	124-126	ubiquitin-specific protease 12	Arabidopsis thaliana	52-57
28536144-5	2017	Transgenic Arabidopsis thaliana plants deficient in UBP12 and UBP13 show accelerated decay of MYC2 and are hyposensitive to JA, whereas plants overexpressing UBP12 or UBP13 have prolonged MYC2 half-life and are hypersensitive to JA Our results suggest that there is a genetic link between UBP12, UBP13, and MYC2.	jasmonic acid	124-126	ubiquitin-specific protease 13	Arabidopsis thaliana	62-67
28550149-6	2017	We also found that MdMYC2 interacted with MdERF2, a suppressor of MdERF3 and MdACS1 This protein interaction prevented MdERF2 from interacting with MdERF3 and from binding to the MdACS1 promoter, leading to increased transcription of MdACS1 Collectively, these results indicate that JA promotes ethylene biosynthesis through the regulation of MdERFs and ethylene biosynthetic genes by MdMYC2.	jasmonic acid	283-285	ethylene-responsive transcription factor 2-like	Malus domestica	42-48
28550149-6	2017	We also found that MdMYC2 interacted with MdERF2, a suppressor of MdERF3 and MdACS1 This protein interaction prevented MdERF2 from interacting with MdERF3 and from binding to the MdACS1 promoter, leading to increased transcription of MdACS1 Collectively, these results indicate that JA promotes ethylene biosynthesis through the regulation of MdERFs and ethylene biosynthetic genes by MdMYC2.	jasmonic acid	283-285	ethylene-responsive transcription factor 2-like	Malus domestica	119-125
27696021-5	2017	Interestingly, C16-DMA induced the expression of the jasmonic acid (JA)-responsive gene marker pLOX2:uidA, while JA-related mutants jar1, coi1-1, and myc2 affected on JA biosynthesis and perception, respectively, are compromised in C16-DMA responses.	jasmonic acid	68-70	Basic helix-loop-helix (bHLH) DNA-binding family protein	Arabidopsis thaliana	150-154
28573209-1	2017	Coronatine (1), a small-molecular virulence factor produced by plant-pathogenic bacteria, promotes bacterial infection by inducing the opening of stomatal pores, the major route of bacterial entry into the plant, via the jasmonate-mediated COI1-JAZ signaling pathway.	jasmonic acid	221-230	RNI-like superfamily protein	Arabidopsis thaliana	240-244
28573209-1	2017	Coronatine (1), a small-molecular virulence factor produced by plant-pathogenic bacteria, promotes bacterial infection by inducing the opening of stomatal pores, the major route of bacterial entry into the plant, via the jasmonate-mediated COI1-JAZ signaling pathway.	jasmonic acid	221-230	zinc finger protein 346	Homo sapiens	245-248
28494021-1	2017	As a core subunit of the SCF complex that promotes protein degradation through the 26S proteasome, S-phase kinase-associated protein 1 (SKP1) plays important roles in multiple cellular processes in eukaryotes, including gibberellin (GA), jasmonate, ethylene, auxin and light responses.	jasmonic acid	238-247	S-phase kinase associated protein 1	Homo sapiens	99-134
28494021-1	2017	As a core subunit of the SCF complex that promotes protein degradation through the 26S proteasome, S-phase kinase-associated protein 1 (SKP1) plays important roles in multiple cellular processes in eukaryotes, including gibberellin (GA), jasmonate, ethylene, auxin and light responses.	jasmonic acid	238-247	S-phase kinase associated protein 1	Homo sapiens	136-140
28472137-8	2017	Resolved regulatory mechanisms show unexpected patterns for how the jasmonate (JA), ethylene (ET), phytoalexin-deficient 4 (PAD4), and salicylate (SA) signaling sectors control the transcriptional response to flg22.	jasmonic acid	79-81	alpha/beta-Hydrolases superfamily protein	Arabidopsis thaliana	99-122
28472137-8	2017	Resolved regulatory mechanisms show unexpected patterns for how the jasmonate (JA), ethylene (ET), phytoalexin-deficient 4 (PAD4), and salicylate (SA) signaling sectors control the transcriptional response to flg22.	jasmonic acid	79-81	alpha/beta-Hydrolases superfamily protein	Arabidopsis thaliana	124-128
28321936-0	2017	Jasmonate inhibits COP1 activity to suppress hypocotyl elongation and promote cotyledon opening in etiolated Arabidopsis seedlings.	jasmonic acid	0-9	Transducin/WD40 repeat-like superfamily protein	Arabidopsis thaliana	19-23
28321936-5	2017	Here, we report that jasmonate (JA) suppresses hypocotyl elongation and stimulates cotyledon opening in etiolated seedlings, partially phenocopying cop1 mutants in the dark.	jasmonic acid	21-30	Transducin/WD40 repeat-like superfamily protein	Arabidopsis thaliana	148-152
28321936-5	2017	Here, we report that jasmonate (JA) suppresses hypocotyl elongation and stimulates cotyledon opening in etiolated seedlings, partially phenocopying cop1 mutants in the dark.	jasmonic acid	32-34	Transducin/WD40 repeat-like superfamily protein	Arabidopsis thaliana	148-152
28321936-8	2017	JA suppresses COP1 activity through at least two distinct mechanisms: decreasing COP1 protein accumulation in the nucleus; and reducing the physical interaction between COP1 and its activator, SUPPRESSOR OF PHYTOCHROME A-105 1 (SPA1).	jasmonic acid	0-2	Transducin/WD40 repeat-like superfamily protein	Arabidopsis thaliana	14-18
28321936-8	2017	JA suppresses COP1 activity through at least two distinct mechanisms: decreasing COP1 protein accumulation in the nucleus; and reducing the physical interaction between COP1 and its activator, SUPPRESSOR OF PHYTOCHROME A-105 1 (SPA1).	jasmonic acid	0-2	Transducin/WD40 repeat-like superfamily protein	Arabidopsis thaliana	81-85
28321936-8	2017	JA suppresses COP1 activity through at least two distinct mechanisms: decreasing COP1 protein accumulation in the nucleus; and reducing the physical interaction between COP1 and its activator, SUPPRESSOR OF PHYTOCHROME A-105 1 (SPA1).	jasmonic acid	0-2	Transducin/WD40 repeat-like superfamily protein	Arabidopsis thaliana	81-85
28321936-8	2017	JA suppresses COP1 activity through at least two distinct mechanisms: decreasing COP1 protein accumulation in the nucleus; and reducing the physical interaction between COP1 and its activator, SUPPRESSOR OF PHYTOCHROME A-105 1 (SPA1).	jasmonic acid	0-2	SPA (suppressor of phyA-105) protein family	Arabidopsis thaliana	193-226
28321936-8	2017	JA suppresses COP1 activity through at least two distinct mechanisms: decreasing COP1 protein accumulation in the nucleus; and reducing the physical interaction between COP1 and its activator, SUPPRESSOR OF PHYTOCHROME A-105 1 (SPA1).	jasmonic acid	0-2	SPA (suppressor of phyA-105) protein family	Arabidopsis thaliana	228-232
28321936-9	2017	Our work reveals that JA suppresses COP1 activity to stabilize COP1 targets, thereby inhibiting hypocotyl elongation and stimulating cotyledon unfolding in etiolated Arabidopsis seedlings.	jasmonic acid	22-24	Transducin/WD40 repeat-like superfamily protein	Arabidopsis thaliana	36-40
28321936-9	2017	Our work reveals that JA suppresses COP1 activity to stabilize COP1 targets, thereby inhibiting hypocotyl elongation and stimulating cotyledon unfolding in etiolated Arabidopsis seedlings.	jasmonic acid	22-24	Transducin/WD40 repeat-like superfamily protein	Arabidopsis thaliana	63-67
28514654-2	2017	In the JA signaling pathway, the core transcription factors are a class of basic helix-loop-helix (bHLH) proteins, including MYC2, MYC3, and MYC4, that have different regulatory capacities.	jasmonic acid	7-9	Basic helix-loop-helix (bHLH) DNA-binding family protein	Arabidopsis thaliana	125-129
28514654-2	2017	In the JA signaling pathway, the core transcription factors are a class of basic helix-loop-helix (bHLH) proteins, including MYC2, MYC3, and MYC4, that have different regulatory capacities.	jasmonic acid	7-9	Basic helix-loop-helix (bHLH) DNA-binding family protein	Arabidopsis thaliana	131-135
28514654-2	2017	In the JA signaling pathway, the core transcription factors are a class of basic helix-loop-helix (bHLH) proteins, including MYC2, MYC3, and MYC4, that have different regulatory capacities.	jasmonic acid	7-9	Basic helix-loop-helix (bHLH) DNA-binding family protein	Arabidopsis thaliana	141-145
28223489-3	2017	It directly controls biosynthesis of jasmonoyl-isoleucine in JA-mediated defense responses and interacts with FIN219-interacting protein 1 (FIP1) under FR light conditions.	jasmonic acid	61-63	FH interacting protein 1	Arabidopsis thaliana	110-138
27943325-3	2017	In Arabidopsis, the protein JAZ10 is thought to play a key role connecting the inactivation of the photoreceptor phytochrome B (phyB), which takes place under competition for light, with the repression of jasmonate-mediated plant defences.	jasmonic acid	205-214	jasmonate-zim-domain protein 10	Arabidopsis thaliana	28-33
27943325-3	2017	In Arabidopsis, the protein JAZ10 is thought to play a key role connecting the inactivation of the photoreceptor phytochrome B (phyB), which takes place under competition for light, with the repression of jasmonate-mediated plant defences.	jasmonic acid	205-214	phytochrome B	Arabidopsis thaliana	113-126
28374843-5	2017	Global transcriptome analysis revealed that genes associated with jasmonic acid (JA) biosynthesis and transduction were significantly altered in AZD8055 treated cotton seedlings, suggesting the potential crosstalk between TOR and JA signaling.	jasmonic acid	66-79	target of rapamycin	Arabidopsis thaliana	222-225
28374843-5	2017	Global transcriptome analysis revealed that genes associated with jasmonic acid (JA) biosynthesis and transduction were significantly altered in AZD8055 treated cotton seedlings, suggesting the potential crosstalk between TOR and JA signaling.	jasmonic acid	81-83	target of rapamycin	Arabidopsis thaliana	222-225
28374843-8	2017	JA biosynthetic and signaling mutants including jar1, coi1-2 and myc2-2 displayed TOR inhibitor-resistant phenotypes, whereas COI1 overexpression transgenic lines and jaz10 exhibited sensitivity to AZD8055.	jasmonic acid	0-2	target of rapamycin	Arabidopsis thaliana	82-85
28168848-0	2017	ORA59 and EIN3 interaction couples jasmonate-ethylene synergistic action to antagonistic salicylic acid regulation of PDF expression.	jasmonic acid	35-44	octadecanoid-responsive AP2/ERF 59	Arabidopsis thaliana	0-5
28168848-0	2017	ORA59 and EIN3 interaction couples jasmonate-ethylene synergistic action to antagonistic salicylic acid regulation of PDF expression.	jasmonic acid	35-44	Ethylene insensitive 3 family protein	Arabidopsis thaliana	10-14
26791972-6	2017	Stimulation of abscisic acid and jasmonate (JA) biosynthesis and accumulation of important compatible solutes, such as sugars, polyols and proline, as well as TCA cycle intermediates were observed in atpao5 mutants under salt stress.	jasmonic acid	33-42	polyamine oxidase 5	Arabidopsis thaliana	200-206
26791972-6	2017	Stimulation of abscisic acid and jasmonate (JA) biosynthesis and accumulation of important compatible solutes, such as sugars, polyols and proline, as well as TCA cycle intermediates were observed in atpao5 mutants under salt stress.	jasmonic acid	44-46	polyamine oxidase 5	Arabidopsis thaliana	200-206
28179150-4	2017	We show that AtJAT1/AtABCG16 controls the cytoplasmic and nuclear partition of jasmonate phytohormones by mediating both cellular efflux of jasmonic acid (JA) and nuclear influx of jasmonoyl-isoleucine (JA-Ile), and is essential for maintaining a critical nuclear JA-Ile concentration to activate JA signaling.	jasmonic acid	140-153	ABC-2 type transporter family protein	Arabidopsis thaliana	20-28
28179150-4	2017	We show that AtJAT1/AtABCG16 controls the cytoplasmic and nuclear partition of jasmonate phytohormones by mediating both cellular efflux of jasmonic acid (JA) and nuclear influx of jasmonoyl-isoleucine (JA-Ile), and is essential for maintaining a critical nuclear JA-Ile concentration to activate JA signaling.	jasmonic acid	15-17	ABC-2 type transporter family protein	Arabidopsis thaliana	20-28
28179150-4	2017	We show that AtJAT1/AtABCG16 controls the cytoplasmic and nuclear partition of jasmonate phytohormones by mediating both cellular efflux of jasmonic acid (JA) and nuclear influx of jasmonoyl-isoleucine (JA-Ile), and is essential for maintaining a critical nuclear JA-Ile concentration to activate JA signaling.	jasmonic acid	155-157	ABC-2 type transporter family protein	Arabidopsis thaliana	20-28
28223489-3	2017	It directly controls biosynthesis of jasmonoyl-isoleucine in JA-mediated defense responses and interacts with FIN219-interacting protein 1 (FIP1) under FR light conditions.	jasmonic acid	61-63	FH interacting protein 1	Arabidopsis thaliana	140-144
28223489-10	2017	We suggest that the increased FIN219 activity resulting from the complex form, a conformation for domain switching, allows FIN219 to switch to its high-affinity mode and thereby enhances JA signaling under continuous FR light conditions.	jasmonic acid	187-189	Auxin-responsive GH3 family protein	Arabidopsis thaliana	30-36
28223489-10	2017	We suggest that the increased FIN219 activity resulting from the complex form, a conformation for domain switching, allows FIN219 to switch to its high-affinity mode and thereby enhances JA signaling under continuous FR light conditions.	jasmonic acid	187-189	Auxin-responsive GH3 family protein	Arabidopsis thaliana	123-129
28082717-5	2017	Moreover, overexpression of the transcription factor gene MYC2 enhanced tolerance to posthypoxic stress, and myc2 knockout mutants showed increased sensitivity to reoxygenation, indicating that MYC2 functions as a key regulator in the JA-mediated reoxygenation response.	jasmonic acid	235-237	Basic helix-loop-helix (bHLH) DNA-binding family protein	Arabidopsis thaliana	58-62
28082717-5	2017	Moreover, overexpression of the transcription factor gene MYC2 enhanced tolerance to posthypoxic stress, and myc2 knockout mutants showed increased sensitivity to reoxygenation, indicating that MYC2 functions as a key regulator in the JA-mediated reoxygenation response.	jasmonic acid	235-237	Basic helix-loop-helix (bHLH) DNA-binding family protein	Arabidopsis thaliana	109-113
28167700-5	2017	Meta-analysis of hormone-responsive marker genes and identification of downstream transcription factor networks revealed that MYB29 functions in the complex interplay of ethylene, jasmonic acid, salicylic acid, and reactive oxygen species signaling by regulating the expression of various ETHYLENE RESPONSE FACTOR and WRKY transcription factors.	jasmonic acid	180-193	myb domain protein 29	Arabidopsis thaliana	126-131
28222174-0	2017	SlMAPK3 enhances tolerance to tomato yellow leaf curl virus (TYLCV) by regulating salicylic acid and jasmonic acid signaling in tomato (Solanum lycopersicum).	jasmonic acid	101-114	mitogen-activated protein kinase 3	Solanum lycopersicum	0-7
28222174-9	2017	Over-expression of SlMAPK3 increased the transcript levels of SA/JA-mediated defense-related genes (PR1, PR1b/SlLapA, SlPI-I, and SlPI-II) and enhanced tolerance to TYLCV.	jasmonic acid	65-67	mitogen-activated protein kinase 3	Solanum lycopersicum	19-26
28137867-2	2017	Below a threshold concentration of jasmonoyl isoleucine (JA-Ile), the active form of JA, the C-terminal Jas motif of JAZ proteins binds MYC transcription factors to repress JA signaling.	jasmonic acid	57-59	MYC proto-oncogene, bHLH transcription factor	Homo sapiens	136-139
28137867-2	2017	Below a threshold concentration of jasmonoyl isoleucine (JA-Ile), the active form of JA, the C-terminal Jas motif of JAZ proteins binds MYC transcription factors to repress JA signaling.	jasmonic acid	85-87	MYC proto-oncogene, bHLH transcription factor	Homo sapiens	136-139
28137867-2	2017	Below a threshold concentration of jasmonoyl isoleucine (JA-Ile), the active form of JA, the C-terminal Jas motif of JAZ proteins binds MYC transcription factors to repress JA signaling.	jasmonic acid	104-107	MYC proto-oncogene, bHLH transcription factor	Homo sapiens	136-139
28137867-3	2017	With increasing JA-Ile concentration, the Jas motif binds to JA-Ile and the COI1 subunit of the SCFCOI1 E3 ligase, which mediates ubiquitination and proteasomal degradation of JAZ repressors, resulting in derepression of MYC transcription factors.	jasmonic acid	42-45	MYC proto-oncogene, bHLH transcription factor	Homo sapiens	221-224
28137867-4	2017	JA signaling subsequently becomes desensitized, in part by feedback induction of JAZ splice variants that lack the C-terminal Jas motif but include an N-terminal cryptic MYC-interaction domain (CMID).	jasmonic acid	0-2	MYC proto-oncogene, bHLH transcription factor	Homo sapiens	170-173
28137867-5	2017	The CMID sequence is dissimilar to the Jas motif and is incapable of recruiting SCFCOI1, allowing CMID-containing JAZ splice variants to accumulate in the presence of JA and to re-repress MYC transcription factors as an integral part of reestablishing signal homeostasis.	jasmonic acid	114-116	MYC proto-oncogene, bHLH transcription factor	Homo sapiens	188-191
28132837-3	2017	We demonstrate that TCP14 regulates the plant immune system by transcriptionally repressing a subset of the jasmonic acid (JA) hormone signaling outputs.	jasmonic acid	108-121	TEOSINTE BRANCHED, cycloidea and PCF (TCP) 14	Arabidopsis thaliana	20-25
28132837-3	2017	We demonstrate that TCP14 regulates the plant immune system by transcriptionally repressing a subset of the jasmonic acid (JA) hormone signaling outputs.	jasmonic acid	123-125	TEOSINTE BRANCHED, cycloidea and PCF (TCP) 14	Arabidopsis thaliana	20-25
28182745-6	2017	RT-qPCR analysis showed a correlation between the systemin-mediated reduced susceptibility and the JA biosynthetic and signaling pathways (e.g. transcriptional alteration of lipoxygenase D and proteinase inhibitor II).	jasmonic acid	99-101	systemin	Solanum lycopersicum	50-58
28182949-0	2017	CATALASE2 Coordinates SA-Mediated Repression of Both Auxin Accumulation and JA Biosynthesis in Plant Defenses.	jasmonic acid	76-78	catalase 2	Arabidopsis thaliana	0-9
28182949-5	2017	In addition, we find that CAT2 promotes JA biosynthesis by facilitating direct interaction of the JA biosynthetic enzymes ACX2 and ACX3, and thus SA repression of CAT2 inhibits JA accumulation.	jasmonic acid	40-42	catalase 2	Arabidopsis thaliana	26-30
28182949-5	2017	In addition, we find that CAT2 promotes JA biosynthesis by facilitating direct interaction of the JA biosynthetic enzymes ACX2 and ACX3, and thus SA repression of CAT2 inhibits JA accumulation.	jasmonic acid	40-42	acyl-CoA oxidase 2	Arabidopsis thaliana	122-126
28182949-5	2017	In addition, we find that CAT2 promotes JA biosynthesis by facilitating direct interaction of the JA biosynthetic enzymes ACX2 and ACX3, and thus SA repression of CAT2 inhibits JA accumulation.	jasmonic acid	40-42	acyl-CoA oxidase 3	Arabidopsis thaliana	131-135
28182949-5	2017	In addition, we find that CAT2 promotes JA biosynthesis by facilitating direct interaction of the JA biosynthetic enzymes ACX2 and ACX3, and thus SA repression of CAT2 inhibits JA accumulation.	jasmonic acid	98-100	catalase 2	Arabidopsis thaliana	26-30
28182949-5	2017	In addition, we find that CAT2 promotes JA biosynthesis by facilitating direct interaction of the JA biosynthetic enzymes ACX2 and ACX3, and thus SA repression of CAT2 inhibits JA accumulation.	jasmonic acid	98-100	acyl-CoA oxidase 2	Arabidopsis thaliana	122-126
28182949-5	2017	In addition, we find that CAT2 promotes JA biosynthesis by facilitating direct interaction of the JA biosynthetic enzymes ACX2 and ACX3, and thus SA repression of CAT2 inhibits JA accumulation.	jasmonic acid	98-100	acyl-CoA oxidase 3	Arabidopsis thaliana	131-135
28182949-5	2017	In addition, we find that CAT2 promotes JA biosynthesis by facilitating direct interaction of the JA biosynthetic enzymes ACX2 and ACX3, and thus SA repression of CAT2 inhibits JA accumulation.	jasmonic acid	98-100	catalase 2	Arabidopsis thaliana	26-30
28182949-5	2017	In addition, we find that CAT2 promotes JA biosynthesis by facilitating direct interaction of the JA biosynthetic enzymes ACX2 and ACX3, and thus SA repression of CAT2 inhibits JA accumulation.	jasmonic acid	98-100	acyl-CoA oxidase 2	Arabidopsis thaliana	122-126
28182949-5	2017	In addition, we find that CAT2 promotes JA biosynthesis by facilitating direct interaction of the JA biosynthetic enzymes ACX2 and ACX3, and thus SA repression of CAT2 inhibits JA accumulation.	jasmonic acid	98-100	acyl-CoA oxidase 3	Arabidopsis thaliana	131-135
28182949-7	2017	Our study illustrates how CAT2 coordinates SA repression of auxin accumulation and JA biosynthesis in plant defense.	jasmonic acid	83-85	catalase 2	Arabidopsis thaliana	26-30
28082717-5	2017	Moreover, overexpression of the transcription factor gene MYC2 enhanced tolerance to posthypoxic stress, and myc2 knockout mutants showed increased sensitivity to reoxygenation, indicating that MYC2 functions as a key regulator in the JA-mediated reoxygenation response.	jasmonic acid	235-237	Basic helix-loop-helix (bHLH) DNA-binding family protein	Arabidopsis thaliana	194-198
28107453-7	2017	While the auxin- and jasmonic acid (JA)- insensitive auxin resistant1 (axr1) double mutant cat2 axr1 also led to decreased expression of PCD markers; the expression of several marker genes for SA signaling (ISOCHORISMATE SYNTHASE 1, PR1 and PR2) were additionally decreased in cat2 axr1 compared to cat2.	jasmonic acid	21-34	NAD(P)-binding Rossmann-fold superfamily protein	Arabidopsis thaliana	71-75
27760496-0	2017	GTR1 is a jasmonic acid and jasmonoyl-l-isoleucine transporter in Arabidopsis thaliana.	jasmonic acid	10-23	Major facilitator superfamily protein	Arabidopsis thaliana	0-4
27760496-8	2017	These results suggested that GTR1 would be involved in the translocation of JA and JA-Ile in plant and may be contributed to correct positioning of JA and JA-Ile to attenuate an excessive wound response in undamaged leaves.	jasmonic acid	76-78	Major facilitator superfamily protein	Arabidopsis thaliana	29-33
28067238-5	2017	As SPL9 levels gradually increase, JAZ3 accumulates and the JA response is attenuated.	jasmonic acid	35-37	squamosa promoter binding protein-like 9	Arabidopsis thaliana	3-7
28051152-6	2017	Meanwhile, DELLAs contribute to cold induction of CBF1, -2, -3 genes through interaction with jasmonate (JA) signaling.	jasmonic acid	94-103	C-repeat/DRE binding factor 1	Arabidopsis thaliana	50-54
28051152-6	2017	Meanwhile, DELLAs contribute to cold induction of CBF1, -2, -3 genes through interaction with jasmonate (JA) signaling.	jasmonic acid	105-107	C-repeat/DRE binding factor 1	Arabidopsis thaliana	50-54
28051152-7	2017	We conclude that CBF3 promotes DELLAs accumulation through repressing GA biosynthesis and DELLAs positively regulate CBF3 involving JA signaling.	jasmonic acid	132-134	dehydration response element B1A	Arabidopsis thaliana	117-121
26929142-7	2017	ROS, pathogenesis-related protein 1 (PR1) mRNAs, salicylic acid (SA) and jasmonic acid (JA) contents are increased in healthy Arabidopsis loss-of-function ILR3 mutant (ilr3.2) plants, which implicates ILR3 in the regulation of plant defence responses.	jasmonic acid	88-90	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	Arabidopsis thaliana	155-159
26929142-10	2017	AMV infection in ilr3.2 plants increases JA by over 10-fold, and SA is reduced significantly, indicating an antagonist crosstalk effect.	jasmonic acid	41-43	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	Arabidopsis thaliana	17-21
27837094-7	2017	Several of the 16 ERFs tested suppressed JA-dependent gene expression, as revealed by enhanced JA-induced PDF1.2 or VSP2 expression levels in the corresponding erf mutants, while others were involved in activation of these genes.	jasmonic acid	41-43	plant defensin 1.2	Arabidopsis thaliana	106-112
27837094-7	2017	Several of the 16 ERFs tested suppressed JA-dependent gene expression, as revealed by enhanced JA-induced PDF1.2 or VSP2 expression levels in the corresponding erf mutants, while others were involved in activation of these genes.	jasmonic acid	41-43	vegetative storage protein 2	Arabidopsis thaliana	116-120
27837094-8	2017	However, SA could antagonize JA-induced PDF1.2 or VSP2 in all erf mutants, suggesting that the tested ERF transcriptional repressors are not required for SA/JA cross-talk.	jasmonic acid	29-31	plant defensin 1.2	Arabidopsis thaliana	40-46
27837094-8	2017	However, SA could antagonize JA-induced PDF1.2 or VSP2 in all erf mutants, suggesting that the tested ERF transcriptional repressors are not required for SA/JA cross-talk.	jasmonic acid	29-31	vegetative storage protein 2	Arabidopsis thaliana	50-54
27837094-9	2017	Moreover, a mutant in the co-repressor TOPLESS, that showed reduction in repression of JA signaling, still displayed SA-mediated antagonism of PDF1.2 and VSP2.	jasmonic acid	87-89	plant defensin 1.2	Arabidopsis thaliana	143-149
27837094-9	2017	Moreover, a mutant in the co-repressor TOPLESS, that showed reduction in repression of JA signaling, still displayed SA-mediated antagonism of PDF1.2 and VSP2.	jasmonic acid	87-89	vegetative storage protein 2	Arabidopsis thaliana	154-158
28184233-10	2017	In addition, detailed analysis of differentially expressed genes associated with plant hormones and endogenous phytohormone levels in wild-type and OE-At5g02890 plants indicated that abscisic acid (ABA), jasmonic acid (JA), and jasmonoyl-isoleucine (JA-Ile) biosynthesis, as well as polar auxin transport, were also affected by overexpression of At5g02890.	jasmonic acid	204-217	HXXXD-type acyl-transferase family protein	Arabidopsis thaliana	151-160
28184233-10	2017	In addition, detailed analysis of differentially expressed genes associated with plant hormones and endogenous phytohormone levels in wild-type and OE-At5g02890 plants indicated that abscisic acid (ABA), jasmonic acid (JA), and jasmonoyl-isoleucine (JA-Ile) biosynthesis, as well as polar auxin transport, were also affected by overexpression of At5g02890.	jasmonic acid	219-221	HXXXD-type acyl-transferase family protein	Arabidopsis thaliana	151-160
28107453-8	2017	The reduced expression of these SA markers genes in cat2 axr1 implicates AXR1 as a regulator of SA signaling in addition to its known role in auxin and JA signaling.	jasmonic acid	152-154	catalase 2	Arabidopsis thaliana	52-56
28107453-8	2017	The reduced expression of these SA markers genes in cat2 axr1 implicates AXR1 as a regulator of SA signaling in addition to its known role in auxin and JA signaling.	jasmonic acid	152-154	NAD(P)-binding Rossmann-fold superfamily protein	Arabidopsis thaliana	57-61
28107453-8	2017	The reduced expression of these SA markers genes in cat2 axr1 implicates AXR1 as a regulator of SA signaling in addition to its known role in auxin and JA signaling.	jasmonic acid	152-154	NAD(P)-binding Rossmann-fold superfamily protein	Arabidopsis thaliana	73-77
28107453-7	2017	While the auxin- and jasmonic acid (JA)- insensitive auxin resistant1 (axr1) double mutant cat2 axr1 also led to decreased expression of PCD markers; the expression of several marker genes for SA signaling (ISOCHORISMATE SYNTHASE 1, PR1 and PR2) were additionally decreased in cat2 axr1 compared to cat2.	jasmonic acid	21-34	cationic amino acid transporter 2	Arabidopsis thaliana	91-100
28107453-7	2017	While the auxin- and jasmonic acid (JA)- insensitive auxin resistant1 (axr1) double mutant cat2 axr1 also led to decreased expression of PCD markers; the expression of several marker genes for SA signaling (ISOCHORISMATE SYNTHASE 1, PR1 and PR2) were additionally decreased in cat2 axr1 compared to cat2.	jasmonic acid	21-34	ADC synthase superfamily protein	Arabidopsis thaliana	207-231
28107453-7	2017	While the auxin- and jasmonic acid (JA)- insensitive auxin resistant1 (axr1) double mutant cat2 axr1 also led to decreased expression of PCD markers; the expression of several marker genes for SA signaling (ISOCHORISMATE SYNTHASE 1, PR1 and PR2) were additionally decreased in cat2 axr1 compared to cat2.	jasmonic acid	21-34	pathogenesis-related protein 1	Arabidopsis thaliana	233-236
28107453-7	2017	While the auxin- and jasmonic acid (JA)- insensitive auxin resistant1 (axr1) double mutant cat2 axr1 also led to decreased expression of PCD markers; the expression of several marker genes for SA signaling (ISOCHORISMATE SYNTHASE 1, PR1 and PR2) were additionally decreased in cat2 axr1 compared to cat2.	jasmonic acid	21-34	beta-1,3-glucanase 2	Arabidopsis thaliana	241-244
28107453-7	2017	While the auxin- and jasmonic acid (JA)- insensitive auxin resistant1 (axr1) double mutant cat2 axr1 also led to decreased expression of PCD markers; the expression of several marker genes for SA signaling (ISOCHORISMATE SYNTHASE 1, PR1 and PR2) were additionally decreased in cat2 axr1 compared to cat2.	jasmonic acid	21-34	catalase 2	Arabidopsis thaliana	91-95
28107453-7	2017	While the auxin- and jasmonic acid (JA)- insensitive auxin resistant1 (axr1) double mutant cat2 axr1 also led to decreased expression of PCD markers; the expression of several marker genes for SA signaling (ISOCHORISMATE SYNTHASE 1, PR1 and PR2) were additionally decreased in cat2 axr1 compared to cat2.	jasmonic acid	21-34	NAD(P)-binding Rossmann-fold superfamily protein	Arabidopsis thaliana	96-100
28107453-7	2017	While the auxin- and jasmonic acid (JA)- insensitive auxin resistant1 (axr1) double mutant cat2 axr1 also led to decreased expression of PCD markers; the expression of several marker genes for SA signaling (ISOCHORISMATE SYNTHASE 1, PR1 and PR2) were additionally decreased in cat2 axr1 compared to cat2.	jasmonic acid	21-34	catalase 2	Arabidopsis thaliana	277-281
28107453-7	2017	While the auxin- and jasmonic acid (JA)- insensitive auxin resistant1 (axr1) double mutant cat2 axr1 also led to decreased expression of PCD markers; the expression of several marker genes for SA signaling (ISOCHORISMATE SYNTHASE 1, PR1 and PR2) were additionally decreased in cat2 axr1 compared to cat2.	jasmonic acid	36-38	NAD(P)-binding Rossmann-fold superfamily protein	Arabidopsis thaliana	71-75
28107453-7	2017	While the auxin- and jasmonic acid (JA)- insensitive auxin resistant1 (axr1) double mutant cat2 axr1 also led to decreased expression of PCD markers; the expression of several marker genes for SA signaling (ISOCHORISMATE SYNTHASE 1, PR1 and PR2) were additionally decreased in cat2 axr1 compared to cat2.	jasmonic acid	36-38	cationic amino acid transporter 2	Arabidopsis thaliana	91-100
28107453-7	2017	While the auxin- and jasmonic acid (JA)- insensitive auxin resistant1 (axr1) double mutant cat2 axr1 also led to decreased expression of PCD markers; the expression of several marker genes for SA signaling (ISOCHORISMATE SYNTHASE 1, PR1 and PR2) were additionally decreased in cat2 axr1 compared to cat2.	jasmonic acid	36-38	catalase 2	Arabidopsis thaliana	91-95
28107453-7	2017	While the auxin- and jasmonic acid (JA)- insensitive auxin resistant1 (axr1) double mutant cat2 axr1 also led to decreased expression of PCD markers; the expression of several marker genes for SA signaling (ISOCHORISMATE SYNTHASE 1, PR1 and PR2) were additionally decreased in cat2 axr1 compared to cat2.	jasmonic acid	36-38	NAD(P)-binding Rossmann-fold superfamily protein	Arabidopsis thaliana	96-100
27419658-11	2016	Our results suggested that GhJAZ2 functions as a primary transcription repressor during lint and fuzz fiber initiation by interacting with GhMYB25-like, GhGL1, GhMYC2, GhWD40 and GhJI1 to regulate the JA signaling pathway.	jasmonic acid	29-31	transcription factor MYB106	Gossypium hirsutum	139-146
27888675-0	2017	The antimicrobial peptide snakin-2 is upregulated in the defense response of tomatoes (Solanum lycopersicum) as part of the jasmonate-dependent signaling pathway.	jasmonic acid	124-133	snakin-2	Solanum lycopersicum	26-34
27888675-5	2017	After fungal infection, wounding, or external application of phytohormones (such as methyl jasmonate, MeJa) operating in the JA-dependent defense response, a systemic reaction with an elevated expression of the SN2 gene is triggered in all parts of tomato plants.	jasmonic acid	125-127	snakin-2	Solanum lycopersicum	211-214
27576496-6	2017	Further, OMC3 cell suspension culture was elicited with JA (50 muM) and obtained 1.12 +- 0.08 mg g-1 DW CPT and 9.52 +- 1.4 g/flask FW (190.4 g L-1 FW).	jasmonic acid	56-58	immunoglobulin kappa variable 1-16	Homo sapiens	144-147
28265994-4	2017	Here, we describe a detailed working protocol regarding the enhanced production of cytokinins from plants that harbor isopentenyltransferase (IPT) enzyme gene under the control of 4xJERE (jasmonic acid and elicitor-responsive element) pathogen-inducible promoter.	jasmonic acid	188-201	tRNA isopentenyltransferase 1	Homo sapiens	142-145
28018412-8	2016	Components of auxin, cytokinin, gibberellic acid, jasmonate and brassinosteroid signaling and metabolism pathways were shown to take part in ABI5 regulation and/or to be regulated by ABI5.	jasmonic acid	50-59	Basic-leucine zipper (bZIP) transcription factor family protein	Arabidopsis thaliana	141-145
28018412-8	2016	Components of auxin, cytokinin, gibberellic acid, jasmonate and brassinosteroid signaling and metabolism pathways were shown to take part in ABI5 regulation and/or to be regulated by ABI5.	jasmonic acid	50-59	Basic-leucine zipper (bZIP) transcription factor family protein	Arabidopsis thaliana	183-187
27749147-8	2016	In nodules of two sacpd-c mutants, the combined jasmonic acid (JA) species (JA and the isoleucine conjugate of JA) were found to be reduced and 12-oxophytodienoic acid (OPDA) levels were significantly higher relative to wild-type lines.	jasmonic acid	48-61	stearoyl-ACP desaturase	Glycine max	18-25
27645136-7	2016	Fatty acid profiling using gas chromatography-mass spectrometry revealed an increase in the jasmonic acid (JA) precursor, 12-oxo-cis,cis-10,15-phytodienoic acid (cis-OPDA), and a reduction in JA and/or its derivatives in acbp6 phloem exudates in comparison to the wild type.	jasmonic acid	107-109	acyl-CoA-binding protein 6	Arabidopsis thaliana	221-226
27645136-9	2016	AtACBP6 appeared to affect the content of JA and/or its derivatives in the sieve tubes, which is consistent with its role in pathogen-defense and in its wound-inducibility of AtACBP6pro::GUS.	jasmonic acid	42-44	acyl-CoA-binding protein 6	Arabidopsis thaliana	0-7
27645136-9	2016	AtACBP6 appeared to affect the content of JA and/or its derivatives in the sieve tubes, which is consistent with its role in pathogen-defense and in its wound-inducibility of AtACBP6pro::GUS.	jasmonic acid	42-44	acyl-CoA-binding protein 6	Arabidopsis thaliana	175-182
27645136-10	2016	Taken together, our results suggest the involvement of AtACBP6 in JA-biosynthesis in Arabidopsis phloem tissues.	jasmonic acid	66-68	acyl-CoA-binding protein 6	Arabidopsis thaliana	55-62
27749147-8	2016	In nodules of two sacpd-c mutants, the combined jasmonic acid (JA) species (JA and the isoleucine conjugate of JA) were found to be reduced and 12-oxophytodienoic acid (OPDA) levels were significantly higher relative to wild-type lines.	jasmonic acid	63-65	stearoyl-ACP desaturase	Glycine max	18-25
27749147-8	2016	In nodules of two sacpd-c mutants, the combined jasmonic acid (JA) species (JA and the isoleucine conjugate of JA) were found to be reduced and 12-oxophytodienoic acid (OPDA) levels were significantly higher relative to wild-type lines.	jasmonic acid	76-78	stearoyl-ACP desaturase	Glycine max	18-25
27749147-8	2016	In nodules of two sacpd-c mutants, the combined jasmonic acid (JA) species (JA and the isoleucine conjugate of JA) were found to be reduced and 12-oxophytodienoic acid (OPDA) levels were significantly higher relative to wild-type lines.	jasmonic acid	76-78	stearoyl-ACP desaturase	Glycine max	18-25
27404131-1	2016	The basic helix-loop-helix (bHLH) Leu zipper transcription factor MYC2 is an important regulator in the Jasmonic acid (JA) signaling pathway.	jasmonic acid	104-117	Basic helix-loop-helix (bHLH) DNA-binding family protein	Arabidopsis thaliana	66-70
27813689-1	2016	Expression takes place for most of the jasmonic acid (JA)-induced genes in a COI1-dependent manner via perception of its conjugate JA-Ile in the SCFCOI1-JAZ co-receptor complex.	jasmonic acid	39-52	zinc finger protein 346	Homo sapiens	153-156
27813689-1	2016	Expression takes place for most of the jasmonic acid (JA)-induced genes in a COI1-dependent manner via perception of its conjugate JA-Ile in the SCFCOI1-JAZ co-receptor complex.	jasmonic acid	54-56	zinc finger protein 346	Homo sapiens	153-156
27404131-1	2016	The basic helix-loop-helix (bHLH) Leu zipper transcription factor MYC2 is an important regulator in the Jasmonic acid (JA) signaling pathway.	jasmonic acid	119-121	Basic helix-loop-helix (bHLH) DNA-binding family protein	Arabidopsis thaliana	66-70
27404131-7	2016	Expression analysis with qRT-PCR demonstrated that the transcript levels of JA-regulated anthocyanin biosynthetic genes, such as MdDFR, MdUF3GT, MdF3H and MdCHS, were markedly up-regulated in the MdMYC2 overexpressing calli and down-regulated in the suppressing calli compared with the WT control.	jasmonic acid	76-78	naringenin,2-oxoglutarate 3-dioxygenase-like	Malus domestica	145-150
27725643-3	2016	In this study, we made the surprising finding that JA is a positive regulator of RPS2-mediated ETI.	jasmonic acid	51-53	ribosomal protein S2	Homo sapiens	81-85
27725643-4	2016	Early induction of JA-responsive genes and de novo JA synthesis following SA accumulation is activated through the SA receptors NPR3 and NPR4, instead of the JA receptor COI1.	jasmonic acid	19-21	natriuretic peptide receptor 3	Homo sapiens	128-132
27725643-4	2016	Early induction of JA-responsive genes and de novo JA synthesis following SA accumulation is activated through the SA receptors NPR3 and NPR4, instead of the JA receptor COI1.	jasmonic acid	51-53	natriuretic peptide receptor 3	Homo sapiens	128-132
27314515-8	2016	Also, the relative expression of these genes involved in salicylic acid/jasmonic acid (SA/JA) signaling pathways was analyzed at different stages after aphid-inoculation and the results demonstrated that there was significantly higher expression of JA-induced LOX gene in both transgenic and wild-type plants inoculated by aphid than the non-inoculated ones while no significant difference in the expression of SA-induced PR-1a gene among them was found, which indicated the JA-mediated resistance response was activated during aphid infestation.	jasmonic acid	72-85	probable linoleate 9S-lipoxygenase 5	Nicotiana tabacum	260-263
27646210-6	2016	The salicylic acid pathway-related genes phenylalanine ammonia-lyase and pathogenesis-related protein 1a were up-regulated in both cultivars, whereas expression of the jasmonic acid pathway-related gene lipoxygenase was only elevated in the susceptible tomato cultivar (L390).	jasmonic acid	168-181	linoleate 9S-lipoxygenase A	Solanum lycopersicum	203-215
27314515-8	2016	Also, the relative expression of these genes involved in salicylic acid/jasmonic acid (SA/JA) signaling pathways was analyzed at different stages after aphid-inoculation and the results demonstrated that there was significantly higher expression of JA-induced LOX gene in both transgenic and wild-type plants inoculated by aphid than the non-inoculated ones while no significant difference in the expression of SA-induced PR-1a gene among them was found, which indicated the JA-mediated resistance response was activated during aphid infestation.	jasmonic acid	249-251	probable linoleate 9S-lipoxygenase 5	Nicotiana tabacum	260-263
27833561-1	2016	Environmental stress elevates the level of jasmonic acid (JA) and activates the biosynthesis of nicotine and related pyridine alkaloids in tobacco (Nicotiana tabacum L.) by up-regulating the expression of putrescine N-methyltransferase 1 (NtPMT1), which encodes a putrescine N-methyl transferase that catalyzes nicotine formation.	jasmonic acid	43-56	putrescine N-methyltransferase 1	Nicotiana tabacum	205-237
27833561-1	2016	Environmental stress elevates the level of jasmonic acid (JA) and activates the biosynthesis of nicotine and related pyridine alkaloids in tobacco (Nicotiana tabacum L.) by up-regulating the expression of putrescine N-methyltransferase 1 (NtPMT1), which encodes a putrescine N-methyl transferase that catalyzes nicotine formation.	jasmonic acid	58-60	putrescine N-methyltransferase 1	Nicotiana tabacum	205-237
27833561-1	2016	Environmental stress elevates the level of jasmonic acid (JA) and activates the biosynthesis of nicotine and related pyridine alkaloids in tobacco (Nicotiana tabacum L.) by up-regulating the expression of putrescine N-methyltransferase 1 (NtPMT1), which encodes a putrescine N-methyl transferase that catalyzes nicotine formation.	jasmonic acid	58-60	putrescine N-methyltransferase 1	Nicotiana tabacum	239-245
27833561-3	2016	In this study, we found that high-temperature (HT) treatment activated transcription of NtMYC2a, which subsequently stimulated the transcription of genes associated with JA biosynthesis, including Lipoxygenase (LOX), Allene oxide synthase (AOS), Allene oxide cyclase (AOC), and 12-oxophytodienodate reductase (OPR).	jasmonic acid	170-172	probable linoleate 9S-lipoxygenase 5	Nicotiana tabacum	197-209
27833561-3	2016	In this study, we found that high-temperature (HT) treatment activated transcription of NtMYC2a, which subsequently stimulated the transcription of genes associated with JA biosynthesis, including Lipoxygenase (LOX), Allene oxide synthase (AOS), Allene oxide cyclase (AOC), and 12-oxophytodienodate reductase (OPR).	jasmonic acid	170-172	probable linoleate 9S-lipoxygenase 5	Nicotiana tabacum	211-214
27314515-8	2016	Also, the relative expression of these genes involved in salicylic acid/jasmonic acid (SA/JA) signaling pathways was analyzed at different stages after aphid-inoculation and the results demonstrated that there was significantly higher expression of JA-induced LOX gene in both transgenic and wild-type plants inoculated by aphid than the non-inoculated ones while no significant difference in the expression of SA-induced PR-1a gene among them was found, which indicated the JA-mediated resistance response was activated during aphid infestation.	jasmonic acid	90-92	probable linoleate 9S-lipoxygenase 5	Nicotiana tabacum	260-263
27314515-8	2016	Also, the relative expression of these genes involved in salicylic acid/jasmonic acid (SA/JA) signaling pathways was analyzed at different stages after aphid-inoculation and the results demonstrated that there was significantly higher expression of JA-induced LOX gene in both transgenic and wild-type plants inoculated by aphid than the non-inoculated ones while no significant difference in the expression of SA-induced PR-1a gene among them was found, which indicated the JA-mediated resistance response was activated during aphid infestation.	jasmonic acid	249-251	probable linoleate 9S-lipoxygenase 5	Nicotiana tabacum	260-263
27346129-7	2016	Further evidences showed that salicylic acid (SA) and jasmonic acid (JA) might be involved in GLKs-mediated virus resistance, as SA or JA level and synthesis-related genes transcription were impaired in glk1glk2 mutant.	jasmonic acid	54-67	GBF's pro-rich region-interacting factor 1	Arabidopsis thaliana	203-211
27624344-4	2016	In Arabidopsis, ectopically expressed ROXY19 (originally named GRX480 or GRXC9) negatively regulates expression of jasmonic acid/ethylene-induced defense genes through an unknown mechanism that requires at least one of the redundant transcription factors TGA2, TGA5 or TGA6.	jasmonic acid	115-128	Thioredoxin superfamily protein	Arabidopsis thaliana	38-44
27624344-4	2016	In Arabidopsis, ectopically expressed ROXY19 (originally named GRX480 or GRXC9) negatively regulates expression of jasmonic acid/ethylene-induced defense genes through an unknown mechanism that requires at least one of the redundant transcription factors TGA2, TGA5 or TGA6.	jasmonic acid	115-128	Thioredoxin superfamily protein	Arabidopsis thaliana	63-69
27624344-4	2016	In Arabidopsis, ectopically expressed ROXY19 (originally named GRX480 or GRXC9) negatively regulates expression of jasmonic acid/ethylene-induced defense genes through an unknown mechanism that requires at least one of the redundant transcription factors TGA2, TGA5 or TGA6.	jasmonic acid	115-128	bZIP transcription factor family protein	Arabidopsis thaliana	255-259
27624344-4	2016	In Arabidopsis, ectopically expressed ROXY19 (originally named GRX480 or GRXC9) negatively regulates expression of jasmonic acid/ethylene-induced defense genes through an unknown mechanism that requires at least one of the redundant transcription factors TGA2, TGA5 or TGA6.	jasmonic acid	115-128	OCS-element binding factor 5	Arabidopsis thaliana	261-265
27624344-4	2016	In Arabidopsis, ectopically expressed ROXY19 (originally named GRX480 or GRXC9) negatively regulates expression of jasmonic acid/ethylene-induced defense genes through an unknown mechanism that requires at least one of the redundant transcription factors TGA2, TGA5 or TGA6.	jasmonic acid	115-128	TGACG motif-binding factor 6	Arabidopsis thaliana	269-273
27346129-7	2016	Further evidences showed that salicylic acid (SA) and jasmonic acid (JA) might be involved in GLKs-mediated virus resistance, as SA or JA level and synthesis-related genes transcription were impaired in glk1glk2 mutant.	jasmonic acid	69-71	GBF's pro-rich region-interacting factor 1	Arabidopsis thaliana	203-211
27346129-7	2016	Further evidences showed that salicylic acid (SA) and jasmonic acid (JA) might be involved in GLKs-mediated virus resistance, as SA or JA level and synthesis-related genes transcription were impaired in glk1glk2 mutant.	jasmonic acid	135-137	GBF's pro-rich region-interacting factor 1	Arabidopsis thaliana	203-211
26864878-4	2016	A suite of JA- and Et-related mutants including coronatine insensitive1, jasmonic acid resistant1 (jar1), etr1, ein2 and ein3 showed tolerance to serotonin in the inhibition of primary root growth and ROS redistribution within the root tip when compared with wild-type (WT) seedlings.	jasmonic acid	11-13	Auxin-responsive GH3 family protein	Arabidopsis thaliana	99-103
26864878-4	2016	A suite of JA- and Et-related mutants including coronatine insensitive1, jasmonic acid resistant1 (jar1), etr1, ein2 and ein3 showed tolerance to serotonin in the inhibition of primary root growth and ROS redistribution within the root tip when compared with wild-type (WT) seedlings.	jasmonic acid	11-13	Signal transduction histidine kinase, hybrid-type, ethylene sensor	Arabidopsis thaliana	106-110
26864878-4	2016	A suite of JA- and Et-related mutants including coronatine insensitive1, jasmonic acid resistant1 (jar1), etr1, ein2 and ein3 showed tolerance to serotonin in the inhibition of primary root growth and ROS redistribution within the root tip when compared with wild-type (WT) seedlings.	jasmonic acid	11-13	NRAMP metal ion transporter family protein	Arabidopsis thaliana	112-116
27337067-5	2016	Gene expression of SlAKR4B was induced by NaCl, H2O2, and plant hormones such as salicylic acid and jasmonic acid, suggesting that SlAKR4B is involved in the stress response.	jasmonic acid	100-113	aldo-keto reductase 4B	Solanum lycopersicum	19-26
27337067-5	2016	Gene expression of SlAKR4B was induced by NaCl, H2O2, and plant hormones such as salicylic acid and jasmonic acid, suggesting that SlAKR4B is involved in the stress response.	jasmonic acid	100-113	aldo-keto reductase 4B	Solanum lycopersicum	131-138
27268959-3	2016	Further investigation suggested that the negative regulation of WRKY57 against B cinerea depends on the jasmonic acid (JA) signaling pathway.	jasmonic acid	104-117	WRKY DNA-binding protein 57	Arabidopsis thaliana	64-70
27268959-3	2016	Further investigation suggested that the negative regulation of WRKY57 against B cinerea depends on the jasmonic acid (JA) signaling pathway.	jasmonic acid	119-121	WRKY DNA-binding protein 57	Arabidopsis thaliana	64-70
27454415-7	2016	Analysis of pathogenesis-related genes showed that Gbeta negatively regulated salicylic acid, jasmonic acid and abscisic acid marker genes during CMV and TuMV infections.	jasmonic acid	94-107	succinate-CoA ligase GDP-forming subunit beta	Homo sapiens	51-56
26864878-4	2016	A suite of JA- and Et-related mutants including coronatine insensitive1, jasmonic acid resistant1 (jar1), etr1, ein2 and ein3 showed tolerance to serotonin in the inhibition of primary root growth and ROS redistribution within the root tip when compared with wild-type (WT) seedlings.	jasmonic acid	11-13	Ethylene insensitive 3 family protein	Arabidopsis thaliana	121-125
26864878-4	2016	A suite of JA- and Et-related mutants including coronatine insensitive1, jasmonic acid resistant1 (jar1), etr1, ein2 and ein3 showed tolerance to serotonin in the inhibition of primary root growth and ROS redistribution within the root tip when compared with wild-type (WT) seedlings.	jasmonic acid	73-86	Auxin-responsive GH3 family protein	Arabidopsis thaliana	99-103
26876016-4	2016	JAs-responsive transcription factors (TFs) that regulate the JAs-induced accumulation of secondary metabolites belong to different families including AP2/ERF, bHLH, MYB and WRKY.	jasmonic acid	0-3	transcription factor AP-2 alpha	Homo sapiens	150-153
27432888-9	2016	Importantly, TT8 affects stress response, along with brassinosteroid and jasmonic acid biosynthesis, by directly binding to the promoters of key genes of these processes.	jasmonic acid	73-86	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	Arabidopsis thaliana	13-16
27459369-13	2016	Evaluation of the in vivo function of the different CYP94-enzymes on the JA-sensitivity demonstrated that particularly CYP94B-enzymes might play an essential role for JA-response, whereas CYP94C1 might only be of minor importance.	jasmonic acid	73-75	cytochrome P450, family 94, subfamily C, polypeptide 1	Arabidopsis thaliana	188-195
26876016-4	2016	JAs-responsive transcription factors (TFs) that regulate the JAs-induced accumulation of secondary metabolites belong to different families including AP2/ERF, bHLH, MYB and WRKY.	jasmonic acid	0-3	ETS2 repressor factor	Homo sapiens	154-157
26876016-4	2016	JAs-responsive transcription factors (TFs) that regulate the JAs-induced accumulation of secondary metabolites belong to different families including AP2/ERF, bHLH, MYB and WRKY.	jasmonic acid	0-3	MYB proto-oncogene, transcription factor	Homo sapiens	165-168
27208279-8	2016	Furthermore, we found that ant ail6 plants have elevated levels of two defense hormones: salicylic acid and jasmonic acid, and show increased resistance to the bacterial pathogen Pseudomonas syringae These results suggest that ANT and AIL6 regulate biological pathways that are critical for both development and defense.	jasmonic acid	108-121	Integrase-type DNA-binding superfamily protein	Arabidopsis thaliana	27-30
27208279-8	2016	Furthermore, we found that ant ail6 plants have elevated levels of two defense hormones: salicylic acid and jasmonic acid, and show increased resistance to the bacterial pathogen Pseudomonas syringae These results suggest that ANT and AIL6 regulate biological pathways that are critical for both development and defense.	jasmonic acid	108-121	AINTEGUMENTA-like 6	Arabidopsis thaliana	31-35
27208279-8	2016	Furthermore, we found that ant ail6 plants have elevated levels of two defense hormones: salicylic acid and jasmonic acid, and show increased resistance to the bacterial pathogen Pseudomonas syringae These results suggest that ANT and AIL6 regulate biological pathways that are critical for both development and defense.	jasmonic acid	108-121	Integrase-type DNA-binding superfamily protein	Arabidopsis thaliana	227-230
27208279-8	2016	Furthermore, we found that ant ail6 plants have elevated levels of two defense hormones: salicylic acid and jasmonic acid, and show increased resistance to the bacterial pathogen Pseudomonas syringae These results suggest that ANT and AIL6 regulate biological pathways that are critical for both development and defense.	jasmonic acid	108-121	AINTEGUMENTA-like 6	Arabidopsis thaliana	235-239
27324416-3	2016	Jasmonate (JA) promotes AAL toxin induced PCD in a COI1 (coronatine insensitive 1, JA receptor)-dependent manner by enhancement of reactive oxygen species (ROS) production.	jasmonic acid	0-9	coronatine-insensitive 1	Solanum lycopersicum	51-55
26356550-0	2016	A gain-of-function mutation in Msl10 triggers cell death and wound-induced hyperaccumulation of jasmonic acid in Arabidopsis.	jasmonic acid	96-109	mechanosensitive channel of small conductance-like 10	Arabidopsis thaliana	31-36
26356550-8	2016	These results suggest that MSL10 is involved in the wound-triggered early signal transduction pathway and possibly in regulating the positive feedback synthesis of JA.	jasmonic acid	164-166	mechanosensitive channel of small conductance-like 10	Arabidopsis thaliana	27-32
27217545-5	2016	We found that JA-responsive JAZ genes were up-regulated by salt stress in a COI1-dependent manner in the roots.	jasmonic acid	14-16	RNI-like superfamily protein	Arabidopsis thaliana	76-80
27217545-6	2016	Using a JA-Ile sensor we demonstrated that activation of JA signaling by salt stress occurs in the meristematic zone and stele of the differentiation zone and that this activation was dependent on JAR1 and proteasome functions.	jasmonic acid	57-59	Auxin-responsive GH3 family protein	Arabidopsis thaliana	197-201
27217545-7	2016	Another finding is that the elongation zone (EZ) and its cortical cells were significantly longer in JA-related mutants (AOS, COI1, JAZ3 and MYC2/3/4 genes) compared with wild-type plants under salt stress, revealing the participation of the canonical JA signaling pathway.	jasmonic acid	101-103	RNI-like superfamily protein	Arabidopsis thaliana	126-130
27217545-7	2016	Another finding is that the elongation zone (EZ) and its cortical cells were significantly longer in JA-related mutants (AOS, COI1, JAZ3 and MYC2/3/4 genes) compared with wild-type plants under salt stress, revealing the participation of the canonical JA signaling pathway.	jasmonic acid	101-103	jasmonate-zim-domain protein 3	Arabidopsis thaliana	132-136
27217545-7	2016	Another finding is that the elongation zone (EZ) and its cortical cells were significantly longer in JA-related mutants (AOS, COI1, JAZ3 and MYC2/3/4 genes) compared with wild-type plants under salt stress, revealing the participation of the canonical JA signaling pathway.	jasmonic acid	101-103	Basic helix-loop-helix (bHLH) DNA-binding family protein	Arabidopsis thaliana	141-149
27208290-5	2016	NATA1 expression is strongly induced by the plant defense signaling molecule jasmonic acid and coronatine, an effector molecule produced by DC3000, a Pseudomonas syringae strain that initiates a virulent infection in Arabidopsis ecotype Columbia-0.	jasmonic acid	77-90	Acyl-CoA N-acyltransferases (NAT) superfamily protein	Arabidopsis thaliana	0-5
27324416-3	2016	Jasmonate (JA) promotes AAL toxin induced PCD in a COI1 (coronatine insensitive 1, JA receptor)-dependent manner by enhancement of reactive oxygen species (ROS) production.	jasmonic acid	11-13	coronatine-insensitive 1	Solanum lycopersicum	51-55
27324416-7	2016	Comparison between AAL toxin treated jai1 and its WT revealed the COI1-dependent JA pathway regulated proteins, including pathways related to redox response, ceramide synthesis, JA, ethylene (ET), salicylic acid (SA) and abscisic acid (ABA) signaling.	jasmonic acid	81-83	coronatine-insensitive 1	Solanum lycopersicum	66-70
26310916-8	2016	Using quantitative real-time PCR (qRT-PCR) to measure the transcript levels of salicylic acid (SA) and jasmonate/ethylene (JA/ET) pathway genes, we found that enhanced resistance of srfr1-1 plants to S. exigua correlated with specific upregulation of the MYC2 branch of the JA pathway concurrent with suppression of the SA pathway.	jasmonic acid	103-112	Tetratricopeptide repeat (TPR)-like superfamily protein	Arabidopsis thaliana	182-187
26956135-6	2016	With a high expression in roots, PAT1H1 was found to interact with the jasmonic acid (JA) signalling negative regulator Novel Interactor of JAZ (NINJA) and thus regulate root DSC niche identity.	jasmonic acid	71-84	zinc finger protein 346	Mus musculus	140-143
26956135-6	2016	With a high expression in roots, PAT1H1 was found to interact with the jasmonic acid (JA) signalling negative regulator Novel Interactor of JAZ (NINJA) and thus regulate root DSC niche identity.	jasmonic acid	86-88	zinc finger protein 346	Mus musculus	140-143
27242811-9	2016	The activities of superoxide dismutase (SOD), peroxidase (POD), catalase (CAT), and ascorbate peroxidase (APX) increases by 40.04, 28.22, 48.53, and 56.79%, respectively, over the control in Ni treated seedlings and further enhancement in the antioxidant activity was observed by the application of JA.	jasmonic acid	299-301	catalase-3	Glycine max	74-77
27242811-9	2016	The activities of superoxide dismutase (SOD), peroxidase (POD), catalase (CAT), and ascorbate peroxidase (APX) increases by 40.04, 28.22, 48.53, and 56.79%, respectively, over the control in Ni treated seedlings and further enhancement in the antioxidant activity was observed by the application of JA.	jasmonic acid	299-301	peroxidase	Glycine max	94-104
26310916-8	2016	Using quantitative real-time PCR (qRT-PCR) to measure the transcript levels of salicylic acid (SA) and jasmonate/ethylene (JA/ET) pathway genes, we found that enhanced resistance of srfr1-1 plants to S. exigua correlated with specific upregulation of the MYC2 branch of the JA pathway concurrent with suppression of the SA pathway.	jasmonic acid	123-125	Tetratricopeptide repeat (TPR)-like superfamily protein	Arabidopsis thaliana	182-187
26310916-8	2016	Using quantitative real-time PCR (qRT-PCR) to measure the transcript levels of salicylic acid (SA) and jasmonate/ethylene (JA/ET) pathway genes, we found that enhanced resistance of srfr1-1 plants to S. exigua correlated with specific upregulation of the MYC2 branch of the JA pathway concurrent with suppression of the SA pathway.	jasmonic acid	274-276	Tetratricopeptide repeat (TPR)-like superfamily protein	Arabidopsis thaliana	182-187
27016448-5	2016	Phenotypes of the pho1 mutant typically associated with Pi deficiency, such as high shoot anthocyanin levels and poor shoot growth, were significantly attenuated by blocking the JA biosynthesis or signaling pathway.	jasmonic acid	178-180	phosphate 1	Arabidopsis thaliana	18-22
27107291-0	2016	AtWRKY22 promotes susceptibility to aphids and modulates salicylic acid and jasmonic acid signalling.	jasmonic acid	76-89	WRKY family transcription factor	Arabidopsis thaliana	0-8
27107291-6	2016	Based on this and previous studies, WRKY22 is considered to modulate the interplay between the SA and JA pathways in response to a wide range of biotic and abiotic stimuli.	jasmonic acid	102-104	WRKY family transcription factor	Arabidopsis thaliana	36-42
27107291-7	2016	Its induction by aphids and its role in suppressing SA and JA signalling make WRKY22 a potential target for aphids to manipulate host plant defences.	jasmonic acid	59-61	WRKY family transcription factor	Arabidopsis thaliana	78-84
27016448-6	2016	Wounded pho1 leaves hyperaccumulated JA/JA-isoleucine in comparison with the wild type.	jasmonic acid	37-39	phosphate 1	Arabidopsis thaliana	8-12
27194952-5	2016	Quantitative real-time PCR (Q-RT-PCR) results indicated that several plant defence genes, including the salicylic acid (SA)-responsive PR1a, PR1b, PR5, and phenylalanine ammonia lyase (PAL), as well as the jasmonic acid (JA)-responsive PDF1.2 and CORONATINE INSENSITIVE 1 (COI1), were all up-regulated.	jasmonic acid	206-219	pathogenesis-related protein 1B	Nicotiana tabacum	141-145
27194952-5	2016	Quantitative real-time PCR (Q-RT-PCR) results indicated that several plant defence genes, including the salicylic acid (SA)-responsive PR1a, PR1b, PR5, and phenylalanine ammonia lyase (PAL), as well as the jasmonic acid (JA)-responsive PDF1.2 and CORONATINE INSENSITIVE 1 (COI1), were all up-regulated.	jasmonic acid	206-219	phenylalanine ammonia-lyase	Nicotiana tabacum	156-183
27194952-5	2016	Quantitative real-time PCR (Q-RT-PCR) results indicated that several plant defence genes, including the salicylic acid (SA)-responsive PR1a, PR1b, PR5, and phenylalanine ammonia lyase (PAL), as well as the jasmonic acid (JA)-responsive PDF1.2 and CORONATINE INSENSITIVE 1 (COI1), were all up-regulated.	jasmonic acid	221-223	pathogenesis-related protein 1B	Nicotiana tabacum	141-145
27194952-5	2016	Quantitative real-time PCR (Q-RT-PCR) results indicated that several plant defence genes, including the salicylic acid (SA)-responsive PR1a, PR1b, PR5, and phenylalanine ammonia lyase (PAL), as well as the jasmonic acid (JA)-responsive PDF1.2 and CORONATINE INSENSITIVE 1 (COI1), were all up-regulated.	jasmonic acid	221-223	phenylalanine ammonia-lyase	Nicotiana tabacum	156-183
27168965-10	2016	Furthermore, the expression profiles of the salicylic acid (SA) and jasmonic acid (JA)-mediated signaling pathways and phytohormone analyses including SA and JA revealed that the Arabidopsis ntrc mutant shows elevated JA-mediated signaling pathways in response to nonhost pathogen.	jasmonic acid	68-81	NADPH-dependent thioredoxin reductase C	Arabidopsis thaliana	191-195
27168965-10	2016	Furthermore, the expression profiles of the salicylic acid (SA) and jasmonic acid (JA)-mediated signaling pathways and phytohormone analyses including SA and JA revealed that the Arabidopsis ntrc mutant shows elevated JA-mediated signaling pathways in response to nonhost pathogen.	jasmonic acid	83-85	NADPH-dependent thioredoxin reductase C	Arabidopsis thaliana	191-195
27168965-10	2016	Furthermore, the expression profiles of the salicylic acid (SA) and jasmonic acid (JA)-mediated signaling pathways and phytohormone analyses including SA and JA revealed that the Arabidopsis ntrc mutant shows elevated JA-mediated signaling pathways in response to nonhost pathogen.	jasmonic acid	158-160	NADPH-dependent thioredoxin reductase C	Arabidopsis thaliana	191-195
27168965-10	2016	Furthermore, the expression profiles of the salicylic acid (SA) and jasmonic acid (JA)-mediated signaling pathways and phytohormone analyses including SA and JA revealed that the Arabidopsis ntrc mutant shows elevated JA-mediated signaling pathways in response to nonhost pathogen.	jasmonic acid	158-160	NADPH-dependent thioredoxin reductase C	Arabidopsis thaliana	191-195
27113714-5	2016	Micro-array analysis of transgenic plants over-expressing GhNAC2 reveals activation of the ABA/JA pathways and a suppression of the ethylene pathway at several levels to reduce expression of ERF6/ERF1/WRKY33/ MPK3/MKK9/ACS6 and their targets.	jasmonic acid	95-97	NAC domain-containing protein 2	Gossypium hirsutum	58-64
27101793-4	2016	Importantly, AtOPR3 functioned to down-regulate primary root growth under P limitation mostly by its own, rather than depending on the Jasmonic acid signaling pathway.	jasmonic acid	135-148	oxophytodienoate-reductase 3	Arabidopsis thaliana	13-19
26991128-4	2016	LOX2 is known to be involved in formation of JA; thus, LOX2 is apparently versatile in function.	jasmonic acid	45-47	lipoxygenase 2	Arabidopsis thaliana	0-4
27016448-7	2016	The pho1 mutant also showed an increased resistance against the generalist herbivore Spodoptera littoralis that was attenuated in JA biosynthesis and signaling mutants.	jasmonic acid	130-132	phosphate 1	Arabidopsis thaliana	4-8
27135236-10	2016	Together with LOX2 and LOX6, and working downstream of them, LOX3 and LOX4 contribute to jasmonate synthesis that leads to the expression of the defense gene VEGETATIVE STORAGE PROTEIN2 (VSP2).	jasmonic acid	89-98	lipoxygenase 2	Arabidopsis thaliana	14-18
27135236-10	2016	Together with LOX2 and LOX6, and working downstream of them, LOX3 and LOX4 contribute to jasmonate synthesis that leads to the expression of the defense gene VEGETATIVE STORAGE PROTEIN2 (VSP2).	jasmonic acid	89-98	PLAT/LH2 domain-containing lipoxygenase family protein	Arabidopsis thaliana	23-27
27135236-10	2016	Together with LOX2 and LOX6, and working downstream of them, LOX3 and LOX4 contribute to jasmonate synthesis that leads to the expression of the defense gene VEGETATIVE STORAGE PROTEIN2 (VSP2).	jasmonic acid	89-98	lipoxygenase 3	Arabidopsis thaliana	61-65
27135236-10	2016	Together with LOX2 and LOX6, and working downstream of them, LOX3 and LOX4 contribute to jasmonate synthesis that leads to the expression of the defense gene VEGETATIVE STORAGE PROTEIN2 (VSP2).	jasmonic acid	89-98	PLAT/LH2 domain-containing lipoxygenase family protein	Arabidopsis thaliana	70-74
27135236-10	2016	Together with LOX2 and LOX6, and working downstream of them, LOX3 and LOX4 contribute to jasmonate synthesis that leads to the expression of the defense gene VEGETATIVE STORAGE PROTEIN2 (VSP2).	jasmonic acid	89-98	vegetative storage protein 2	Arabidopsis thaliana	158-185
27135236-10	2016	Together with LOX2 and LOX6, and working downstream of them, LOX3 and LOX4 contribute to jasmonate synthesis that leads to the expression of the defense gene VEGETATIVE STORAGE PROTEIN2 (VSP2).	jasmonic acid	89-98	vegetative storage protein 2	Arabidopsis thaliana	187-191
26621097-12	2016	In contrast, the G2-to-M inhibitor p21 was increased in JA-treated cells.	jasmonic acid	56-58	H3 histone pseudogene 16	Homo sapiens	35-38
26931169-6	2016	Exogenously administered allantoin elicited the expression of JA-responsive genes, including MYC2, in wild-type plants, supporting the idea that allantoin might be responsible for the observed JA-related phenotypes of aln mutants.	jasmonic acid	62-64	Basic helix-loop-helix (bHLH) DNA-binding family protein	Arabidopsis thaliana	93-97
26931169-6	2016	Exogenously administered allantoin elicited the expression of JA-responsive genes, including MYC2, in wild-type plants, supporting the idea that allantoin might be responsible for the observed JA-related phenotypes of aln mutants.	jasmonic acid	193-195	Basic helix-loop-helix (bHLH) DNA-binding family protein	Arabidopsis thaliana	93-97
26931169-7	2016	However, mutants deficient in bioactive JA (jar1-1), insensitive to JA (myc2-3), or deficient in ABA (aba2-1 and bglu18) suppressed the effect of exogenous allantoin.	jasmonic acid	40-42	Auxin-responsive GH3 family protein	Arabidopsis thaliana	44-50
26931169-9	2016	These results indicate that allantoin can activate the MYC2-regulated JA signaling pathway through ABA production.	jasmonic acid	70-72	Basic helix-loop-helix (bHLH) DNA-binding family protein	Arabidopsis thaliana	55-59
26962208-2	2016	NO activates the expression of Allene oxide synthase (AOS) and Lipoxygenase 2 (LOX2), genes encoding two key enzymes of the jasmonic acid (JA) biosynthetic pathway, elevating JA content within the embryogenic tissue.	jasmonic acid	124-137	lipoxygenase 2	Arabidopsis thaliana	63-77
26962208-2	2016	NO activates the expression of Allene oxide synthase (AOS) and Lipoxygenase 2 (LOX2), genes encoding two key enzymes of the jasmonic acid (JA) biosynthetic pathway, elevating JA content within the embryogenic tissue.	jasmonic acid	124-137	lipoxygenase 2	Arabidopsis thaliana	79-83
26962208-2	2016	NO activates the expression of Allene oxide synthase (AOS) and Lipoxygenase 2 (LOX2), genes encoding two key enzymes of the jasmonic acid (JA) biosynthetic pathway, elevating JA content within the embryogenic tissue.	jasmonic acid	139-141	lipoxygenase 2	Arabidopsis thaliana	63-77
26962208-2	2016	NO activates the expression of Allene oxide synthase (AOS) and Lipoxygenase 2 (LOX2), genes encoding two key enzymes of the jasmonic acid (JA) biosynthetic pathway, elevating JA content within the embryogenic tissue.	jasmonic acid	139-141	lipoxygenase 2	Arabidopsis thaliana	79-83
26962208-2	2016	NO activates the expression of Allene oxide synthase (AOS) and Lipoxygenase 2 (LOX2), genes encoding two key enzymes of the jasmonic acid (JA) biosynthetic pathway, elevating JA content within the embryogenic tissue.	jasmonic acid	175-177	lipoxygenase 2	Arabidopsis thaliana	63-77
26962208-2	2016	NO activates the expression of Allene oxide synthase (AOS) and Lipoxygenase 2 (LOX2), genes encoding two key enzymes of the jasmonic acid (JA) biosynthetic pathway, elevating JA content within the embryogenic tissue.	jasmonic acid	175-177	lipoxygenase 2	Arabidopsis thaliana	79-83
26991128-4	2016	LOX2 is known to be involved in formation of JA; thus, LOX2 is apparently versatile in function.	jasmonic acid	45-47	lipoxygenase 2	Arabidopsis thaliana	55-59
26672615-8	2016	Increased turnover of JA-Ile in the ILL6- and IAR3-overexpressing plants created symptoms of JA deficiency whereas increased free IAA by overexpression of ILR1 and IAR3 made plants hypersensitive to exogenous IAA conjugates.	jasmonic acid	22-24	peptidase M20/M25/M40 family protein	Arabidopsis thaliana	46-50
26872948-9	2016	Although all three canonical defense hormone pathways (salicylic acid, jasmonate, and jasmonate/ethylene pathways) were up-regulated in ago1 mutants, we demonstrate that jasmonate perception drives the lesion phenotype.	jasmonic acid	71-80	Stabilizer of iron transporter SufD / Polynucleotidyl transferase	Arabidopsis thaliana	136-140
26872948-9	2016	Although all three canonical defense hormone pathways (salicylic acid, jasmonate, and jasmonate/ethylene pathways) were up-regulated in ago1 mutants, we demonstrate that jasmonate perception drives the lesion phenotype.	jasmonic acid	86-95	Stabilizer of iron transporter SufD / Polynucleotidyl transferase	Arabidopsis thaliana	136-140
26810448-2	2016	Here, we characterize the function of Arabidopsis lipoxygenase3 (LOX3), an enzyme involved in JA synthesis, in salt stress response.	jasmonic acid	94-96	lipoxygenase 3	Arabidopsis thaliana	50-63
26810448-2	2016	Here, we characterize the function of Arabidopsis lipoxygenase3 (LOX3), an enzyme involved in JA synthesis, in salt stress response.	jasmonic acid	94-96	lipoxygenase 3	Arabidopsis thaliana	65-69
26810448-5	2016	Interestingly, methyl jasmonate (MeJA) rescued the salt sensitivity phenotypes of the lox3 mutant, suggesting the impairment of salinity response in the mutant may be mediated by JA.	jasmonic acid	35-37	lipoxygenase 3	Arabidopsis thaliana	86-90
26810448-7	2016	In addition, the measurement of oxylipins in the lox3 mutant and the analysis on germination of the JA receptor coi1 mutant under salt stress supported that JA may regulate the early response to salinity.	jasmonic acid	100-102	RNI-like superfamily protein	Arabidopsis thaliana	112-116
26810448-8	2016	In conclusion, we characterized the novel function of LOX3 in salinity stress response, and found that the salt hypersensitivity of the lox3 mutant can be complemented by MeJA, providing new evidence for the association between JA and salt tolerance.	jasmonic acid	173-175	lipoxygenase 3	Arabidopsis thaliana	54-58
26810448-8	2016	In conclusion, we characterized the novel function of LOX3 in salinity stress response, and found that the salt hypersensitivity of the lox3 mutant can be complemented by MeJA, providing new evidence for the association between JA and salt tolerance.	jasmonic acid	173-175	lipoxygenase 3	Arabidopsis thaliana	136-140
26833563-5	2016	As COI1 is an essential component of the JA co-receptor complex, the null coi1-1 mutant is male sterile due to lack of JA perception.	jasmonic acid	41-43	RNI-like superfamily protein	Arabidopsis thaliana	3-7
26833563-5	2016	As COI1 is an essential component of the JA co-receptor complex, the null coi1-1 mutant is male sterile due to lack of JA perception.	jasmonic acid	41-43	RNI-like superfamily protein	Arabidopsis thaliana	74-80
26672615-8	2016	Increased turnover of JA-Ile in the ILL6- and IAR3-overexpressing plants created symptoms of JA deficiency whereas increased free IAA by overexpression of ILR1 and IAR3 made plants hypersensitive to exogenous IAA conjugates.	jasmonic acid	93-95	IAA-amino acid hydrolase ILR1-like 6	Arabidopsis thaliana	36-50
26672615-8	2016	Increased turnover of JA-Ile in the ILL6- and IAR3-overexpressing plants created symptoms of JA deficiency whereas increased free IAA by overexpression of ILR1 and IAR3 made plants hypersensitive to exogenous IAA conjugates.	jasmonic acid	93-95	peptidase M20/M25/M40 family protein	Arabidopsis thaliana	46-50
26547795-10	2016	In darkness, the mutation of JAZ7 might partially liberate MYC2/MYC3/MYC4 from suppression, leading the MYC proteins to bind to the G-box/G-box-like motifs in the promoters, resulting in the up-regulation of the downstream genes related to indole-glucosinolate biosynthesis, sulphate metabolism, callose deposition, and JA-mediated signalling pathways.	jasmonic acid	29-31	Basic helix-loop-helix (bHLH) DNA-binding family protein	Arabidopsis thaliana	59-63
26547795-10	2016	In darkness, the mutation of JAZ7 might partially liberate MYC2/MYC3/MYC4 from suppression, leading the MYC proteins to bind to the G-box/G-box-like motifs in the promoters, resulting in the up-regulation of the downstream genes related to indole-glucosinolate biosynthesis, sulphate metabolism, callose deposition, and JA-mediated signalling pathways.	jasmonic acid	29-31	Basic helix-loop-helix (bHLH) DNA-binding family protein	Arabidopsis thaliana	64-68
26547795-10	2016	In darkness, the mutation of JAZ7 might partially liberate MYC2/MYC3/MYC4 from suppression, leading the MYC proteins to bind to the G-box/G-box-like motifs in the promoters, resulting in the up-regulation of the downstream genes related to indole-glucosinolate biosynthesis, sulphate metabolism, callose deposition, and JA-mediated signalling pathways.	jasmonic acid	29-31	Basic helix-loop-helix (bHLH) DNA-binding family protein	Arabidopsis thaliana	69-73
26608645-0	2016	AtCNGC2 is involved in jasmonic acid-induced calcium mobilization.	jasmonic acid	23-36	Cyclic nucleotide-regulated ion channel family protein	Arabidopsis thaliana	0-7
26608645-2	2016	We demonstrate that Arabidopsis thaliana cyclic nucleotide-gated channel 2 (AtCNGC2) is involved in jasmonic acid (JA)-induced apoplastic Ca(2+) influx in Arabidopsis epidermal cells.	jasmonic acid	100-113	Cyclic nucleotide-regulated ion channel family protein	Arabidopsis thaliana	76-83
26608645-2	2016	We demonstrate that Arabidopsis thaliana cyclic nucleotide-gated channel 2 (AtCNGC2) is involved in jasmonic acid (JA)-induced apoplastic Ca(2+) influx in Arabidopsis epidermal cells.	jasmonic acid	115-117	Cyclic nucleotide-regulated ion channel family protein	Arabidopsis thaliana	76-83
26608645-7	2016	db-cAMP and JA positively induced the expression of primary (i.e. JAZ1 and MYC2) and secondary (i.e. VSP1) response genes in the JA signalling pathway in wild-type Arabidopsis thaliana, whereas they had no significant effect in the AtCNGC2 mutant "defense, no death (dnd1) plants.	jasmonic acid	12-14	jasmonate-zim-domain protein 1	Arabidopsis thaliana	66-70
26608645-7	2016	db-cAMP and JA positively induced the expression of primary (i.e. JAZ1 and MYC2) and secondary (i.e. VSP1) response genes in the JA signalling pathway in wild-type Arabidopsis thaliana, whereas they had no significant effect in the AtCNGC2 mutant "defense, no death (dnd1) plants.	jasmonic acid	12-14	Basic helix-loop-helix (bHLH) DNA-binding family protein	Arabidopsis thaliana	75-79
26608645-7	2016	db-cAMP and JA positively induced the expression of primary (i.e. JAZ1 and MYC2) and secondary (i.e. VSP1) response genes in the JA signalling pathway in wild-type Arabidopsis thaliana, whereas they had no significant effect in the AtCNGC2 mutant "defense, no death (dnd1) plants.	jasmonic acid	12-14	vegetative storage protein 1	Arabidopsis thaliana	101-105
26608645-7	2016	db-cAMP and JA positively induced the expression of primary (i.e. JAZ1 and MYC2) and secondary (i.e. VSP1) response genes in the JA signalling pathway in wild-type Arabidopsis thaliana, whereas they had no significant effect in the AtCNGC2 mutant "defense, no death (dnd1) plants.	jasmonic acid	12-14	Cyclic nucleotide-regulated ion channel family protein	Arabidopsis thaliana	232-239
26608645-7	2016	db-cAMP and JA positively induced the expression of primary (i.e. JAZ1 and MYC2) and secondary (i.e. VSP1) response genes in the JA signalling pathway in wild-type Arabidopsis thaliana, whereas they had no significant effect in the AtCNGC2 mutant "defense, no death (dnd1) plants.	jasmonic acid	12-14	Cyclic nucleotide-regulated ion channel family protein	Arabidopsis thaliana	267-271
26608645-8	2016	These data provide evidence that JA first induces the elevation of cAMP, and cAMP, as an activating ligand, activates the AtCNGC2 channel, resulting in apoplastic Ca(2+) influx through AtCNGC2.	jasmonic acid	33-35	Cyclic nucleotide-regulated ion channel family protein	Arabidopsis thaliana	185-192
26433201-9	2016	The target genes of the two transcription factors and epistasis analysis suggested that WRKY11 regulated AR156-triggered ISR through activating the JA signalling pathway, and WRKY70 regulated the ISR through activating the SA signalling pathway.	jasmonic acid	148-150	WRKY DNA-binding protein 11	Arabidopsis thaliana	88-94
26941721-12	2016	The results indicate that bacterial VOCs potentiate expression of PR1 and PDF1.2 but not ChiB, which stimulates SA- and JA-dependent signaling pathways in plant ISR and protects plants against pathogen colonization.	jasmonic acid	120-122	pathogenesis-related protein 1	Arabidopsis thaliana	66-69
26941721-12	2016	The results indicate that bacterial VOCs potentiate expression of PR1 and PDF1.2 but not ChiB, which stimulates SA- and JA-dependent signaling pathways in plant ISR and protects plants against pathogen colonization.	jasmonic acid	120-122	protodermal factor 1	Arabidopsis thaliana	74-78
26675361-3	2016	The upstream JA biosynthetic precursor cis-(+)-12-oxo-phytodienoic acid (cis-(+)-OPDA) has been reported to act independently of COI1 as an essential signal in several stress-induced and developmental processes.	jasmonic acid	13-15	RNI-like superfamily protein	Arabidopsis thaliana	129-133
26744997-4	2016	However, application of triacontanol, particularly in the TBHS and TMHS treatments, reversed the deleterious effects of HS by showing increased ABA and JA levels that favored the significant increase in plant growth attributes, enhanced nutrient content, and high amount of amino acid.	jasmonic acid	152-154	LHFPL tetraspan subfamily member 5	Homo sapiens	67-71
26773002-5	2016	O-GlcNAcylation of the DELLA protein REPRESSOR OF ga1-3 (RGA) inhibits RGA binding to four of its interactors-PHYTOCHROME-INTERACTING FACTOR3 (PIF3), PIF4, JASMONATE-ZIM DOMAIN1, and BRASSINAZOLE-RESISTANT1 (BZR1)-that are key regulators in light, jasmonate, and brassinosteroid signaling pathways, respectively.	jasmonic acid	248-257	GRAS family transcription factor family protein	Arabidopsis thaliana	37-55
26773002-5	2016	O-GlcNAcylation of the DELLA protein REPRESSOR OF ga1-3 (RGA) inhibits RGA binding to four of its interactors-PHYTOCHROME-INTERACTING FACTOR3 (PIF3), PIF4, JASMONATE-ZIM DOMAIN1, and BRASSINAZOLE-RESISTANT1 (BZR1)-that are key regulators in light, jasmonate, and brassinosteroid signaling pathways, respectively.	jasmonic acid	248-257	GRAS family transcription factor family protein	Arabidopsis thaliana	57-60
26773002-5	2016	O-GlcNAcylation of the DELLA protein REPRESSOR OF ga1-3 (RGA) inhibits RGA binding to four of its interactors-PHYTOCHROME-INTERACTING FACTOR3 (PIF3), PIF4, JASMONATE-ZIM DOMAIN1, and BRASSINAZOLE-RESISTANT1 (BZR1)-that are key regulators in light, jasmonate, and brassinosteroid signaling pathways, respectively.	jasmonic acid	248-257	GRAS family transcription factor family protein	Arabidopsis thaliana	71-74
26773002-5	2016	O-GlcNAcylation of the DELLA protein REPRESSOR OF ga1-3 (RGA) inhibits RGA binding to four of its interactors-PHYTOCHROME-INTERACTING FACTOR3 (PIF3), PIF4, JASMONATE-ZIM DOMAIN1, and BRASSINAZOLE-RESISTANT1 (BZR1)-that are key regulators in light, jasmonate, and brassinosteroid signaling pathways, respectively.	jasmonic acid	248-257	phytochrome interacting factor 3	Arabidopsis thaliana	143-147
26773002-5	2016	O-GlcNAcylation of the DELLA protein REPRESSOR OF ga1-3 (RGA) inhibits RGA binding to four of its interactors-PHYTOCHROME-INTERACTING FACTOR3 (PIF3), PIF4, JASMONATE-ZIM DOMAIN1, and BRASSINAZOLE-RESISTANT1 (BZR1)-that are key regulators in light, jasmonate, and brassinosteroid signaling pathways, respectively.	jasmonic acid	248-257	phytochrome interacting factor 4	Arabidopsis thaliana	150-154
26773002-5	2016	O-GlcNAcylation of the DELLA protein REPRESSOR OF ga1-3 (RGA) inhibits RGA binding to four of its interactors-PHYTOCHROME-INTERACTING FACTOR3 (PIF3), PIF4, JASMONATE-ZIM DOMAIN1, and BRASSINAZOLE-RESISTANT1 (BZR1)-that are key regulators in light, jasmonate, and brassinosteroid signaling pathways, respectively.	jasmonic acid	248-257	Brassinosteroid signaling positive regulator (BZR1) family protein	Arabidopsis thaliana	183-206
26773002-5	2016	O-GlcNAcylation of the DELLA protein REPRESSOR OF ga1-3 (RGA) inhibits RGA binding to four of its interactors-PHYTOCHROME-INTERACTING FACTOR3 (PIF3), PIF4, JASMONATE-ZIM DOMAIN1, and BRASSINAZOLE-RESISTANT1 (BZR1)-that are key regulators in light, jasmonate, and brassinosteroid signaling pathways, respectively.	jasmonic acid	248-257	Brassinosteroid signaling positive regulator (BZR1) family protein	Arabidopsis thaliana	208-212
26629611-8	2016	AOS3 RNA interference lead to an induction of LOXA and 13-LOX genes, a reduction in AOS3 derived 9-LOX oxylipin compounds and an increase in jasmonic acid content, suggesting compensation between 9 and 13-LOX pathways.	jasmonic acid	141-154	9-divinyl ether synthase-like	Solanum tuberosum	0-4
26672615-4	2016	Here, we characterized three IAH members, ILR1, ILL6, and IAR3, for their function in JA and IAA metabolism and signaling.	jasmonic acid	86-88	Peptidase M20/M25/M40 family protein	Arabidopsis thaliana	42-46
26672615-4	2016	Here, we characterized three IAH members, ILR1, ILL6, and IAR3, for their function in JA and IAA metabolism and signaling.	jasmonic acid	86-88	IAA-amino acid hydrolase ILR1-like 6	Arabidopsis thaliana	48-52
26672615-4	2016	Here, we characterized three IAH members, ILR1, ILL6, and IAR3, for their function in JA and IAA metabolism and signaling.	jasmonic acid	86-88	peptidase M20/M25/M40 family protein	Arabidopsis thaliana	58-62
26672615-7	2016	Perturbed patterns of the endogenous JA profile in plants overexpressing or knocked-out for the three genes were consistent with ILL6 and IAR3, but not ILR1, being the JA amidohydrolases.	jasmonic acid	37-39	IAA-amino acid hydrolase ILR1-like 6	Arabidopsis thaliana	129-133
26672615-7	2016	Perturbed patterns of the endogenous JA profile in plants overexpressing or knocked-out for the three genes were consistent with ILL6 and IAR3, but not ILR1, being the JA amidohydrolases.	jasmonic acid	37-39	peptidase M20/M25/M40 family protein	Arabidopsis thaliana	138-142
26672615-8	2016	Increased turnover of JA-Ile in the ILL6- and IAR3-overexpressing plants created symptoms of JA deficiency whereas increased free IAA by overexpression of ILR1 and IAR3 made plants hypersensitive to exogenous IAA conjugates.	jasmonic acid	22-24	IAA-amino acid hydrolase ILR1-like 6	Arabidopsis thaliana	36-50
26779205-6	2015	JAs have been shown to regulate C-repeat binding factor (CBF) pathway during cold stress.	jasmonic acid	0-3	CCAAT enhancer binding protein zeta	Homo sapiens	32-55
26779205-6	2015	JAs have been shown to regulate C-repeat binding factor (CBF) pathway during cold stress.	jasmonic acid	0-3	CCAAT enhancer binding protein zeta	Homo sapiens	57-60
26779205-7	2015	The interaction between the integrants of JA signaling and components of CBF pathway demonstrates a complex relationship between the two.	jasmonic acid	42-44	CCAAT enhancer binding protein zeta	Homo sapiens	73-76
27135224-7	2016	Expression studies combined with reporter gene analysis revealed the dominant expression of CYP94C1 in mature anthers, consistent with the established role of JA signaling in male fertility.	jasmonic acid	159-161	cytochrome P450, family 94, subfamily C, polypeptide 1	Arabidopsis thaliana	92-99
26574534-5	2016	In bak1-knockout plants, PEPR elicitation results in extensive cell death and the prioritization of salicylate-based defenses over jasmonate-based defenses, in addition to elevated proligand and receptor accumulation.	jasmonic acid	131-140	BRI1-associated receptor kinase	Arabidopsis thaliana	3-7
25752924-0	2015	Activated expression of AtEDT1/HDG11 promotes lateral root formation in Arabidopsis mutant edt1 by upregulating jasmonate biosynthesis.	jasmonic acid	112-121	homeodomain GLABROUS 11	Arabidopsis thaliana	24-30
26720685-0	2016	RepA Protein Encoded by Oat dwarf virus Elicits a Temperature-Sensitive Hypersensitive Response-Type Cell Death That Involves Jasmonic Acid-Dependent Signaling.	jasmonic acid	126-139	RepA	Oat dwarf virus	0-4
27497090-4	2016	In the present study, pretreatment of seedlings with Salicylhydroxamic acid, an inhibitor of lipoxigenase (LOX) in JA biosynthesis, significantly suppressed RIBE-mediated expression of the AtRAD54 gene.	jasmonic acid	115-117	DNA repair/recombination protein	Arabidopsis thaliana	189-196
27497090-8	2016	The over-accumulation of endogenous JA in mutant fatty acid oxygenation up-regulated 2 (fou2), in which mutation of the Two Pore Channel 1 (TPC1) gene up-regulates expression of the LOX and allene oxide synthase (AOS) genes, inhibited RIBE-mediated expression of the AtRAD54 gene, but up-regulated expression of the AtKU70 and AtLIG4 genes in the non-homologous end joining (NHEJ) pathway.	jasmonic acid	36-38	two-pore channel 1	Arabidopsis thaliana	120-138
27497090-8	2016	The over-accumulation of endogenous JA in mutant fatty acid oxygenation up-regulated 2 (fou2), in which mutation of the Two Pore Channel 1 (TPC1) gene up-regulates expression of the LOX and allene oxide synthase (AOS) genes, inhibited RIBE-mediated expression of the AtRAD54 gene, but up-regulated expression of the AtKU70 and AtLIG4 genes in the non-homologous end joining (NHEJ) pathway.	jasmonic acid	36-38	two-pore channel 1	Arabidopsis thaliana	140-144
27497090-8	2016	The over-accumulation of endogenous JA in mutant fatty acid oxygenation up-regulated 2 (fou2), in which mutation of the Two Pore Channel 1 (TPC1) gene up-regulates expression of the LOX and allene oxide synthase (AOS) genes, inhibited RIBE-mediated expression of the AtRAD54 gene, but up-regulated expression of the AtKU70 and AtLIG4 genes in the non-homologous end joining (NHEJ) pathway.	jasmonic acid	36-38	DNA repair/recombination protein	Arabidopsis thaliana	267-274
27497090-8	2016	The over-accumulation of endogenous JA in mutant fatty acid oxygenation up-regulated 2 (fou2), in which mutation of the Two Pore Channel 1 (TPC1) gene up-regulates expression of the LOX and allene oxide synthase (AOS) genes, inhibited RIBE-mediated expression of the AtRAD54 gene, but up-regulated expression of the AtKU70 and AtLIG4 genes in the non-homologous end joining (NHEJ) pathway.	jasmonic acid	36-38	ATP-dependent DNA helicase 2 subunit Ku70-like protein	Arabidopsis thaliana	316-322
27497090-8	2016	The over-accumulation of endogenous JA in mutant fatty acid oxygenation up-regulated 2 (fou2), in which mutation of the Two Pore Channel 1 (TPC1) gene up-regulates expression of the LOX and allene oxide synthase (AOS) genes, inhibited RIBE-mediated expression of the AtRAD54 gene, but up-regulated expression of the AtKU70 and AtLIG4 genes in the non-homologous end joining (NHEJ) pathway.	jasmonic acid	36-38	DNA ligase IV	Arabidopsis thaliana	327-333
26527654-2	2016	Here, we report that far-red light (FR) and red light (R) perceived by phytochrome A (phyA) and phyB positively and negatively regulated cold tolerance, respectively, in tomato (Solanum lycopersicum), which were associated with the regulation of levels of phytohormones such as abscisic acid (ABA) and jasmonic acid (JA) and transcript levels of ABA- and JA-related genes and the C-REPEAT BINDING FACTOR (CBF) stress signaling pathway genes.	jasmonic acid	302-315	Phytochrome A	Solanum lycopersicum	71-84
26527654-2	2016	Here, we report that far-red light (FR) and red light (R) perceived by phytochrome A (phyA) and phyB positively and negatively regulated cold tolerance, respectively, in tomato (Solanum lycopersicum), which were associated with the regulation of levels of phytohormones such as abscisic acid (ABA) and jasmonic acid (JA) and transcript levels of ABA- and JA-related genes and the C-REPEAT BINDING FACTOR (CBF) stress signaling pathway genes.	jasmonic acid	317-319	Phytochrome A	Solanum lycopersicum	71-84
26527654-2	2016	Here, we report that far-red light (FR) and red light (R) perceived by phytochrome A (phyA) and phyB positively and negatively regulated cold tolerance, respectively, in tomato (Solanum lycopersicum), which were associated with the regulation of levels of phytohormones such as abscisic acid (ABA) and jasmonic acid (JA) and transcript levels of ABA- and JA-related genes and the C-REPEAT BINDING FACTOR (CBF) stress signaling pathway genes.	jasmonic acid	355-357	Phytochrome A	Solanum lycopersicum	71-84
26678037-5	2016	Reverse genetics revealed that val1 mutant seeds accumulated elevated levels of proteins compared with the wild type, suggesting that VAL1 functions as a repressor of seed metabolism; however, in the absence of VAL1, the levels of metabolites, ABA, auxin and jasmonate derivatives did not change significantly in developing embryos.	jasmonic acid	259-268	B3 domain-containing transcription repressor VAL1	Arabidopsis thaliana	31-35
26721860-4	2016	We found that, in dgd1 mutants, phloem cap cells were lignified and jasmonic acid (JA)-responsive genes were highly upregulated under normal growth conditions.	jasmonic acid	68-81	UDP-Glycosyltransferase superfamily protein	Arabidopsis thaliana	18-22
26721860-4	2016	We found that, in dgd1 mutants, phloem cap cells were lignified and jasmonic acid (JA)-responsive genes were highly upregulated under normal growth conditions.	jasmonic acid	83-85	UDP-Glycosyltransferase superfamily protein	Arabidopsis thaliana	18-22
26721860-6	2016	Hormone and lipidomics analyses showed higher levels of JA, JA-isoleucine, 12-oxo-phytodienoic acid, and arabidopsides in dgd1 mutants.	jasmonic acid	56-58	UDP-Glycosyltransferase superfamily protein	Arabidopsis thaliana	122-126
26721860-7	2016	Transcript and protein level analyses further suggest that JA biosynthesis in dgd1 is initially activated through the increased expression of genes encoding 13-lipoxygenases (LOXs) and phospholipase A-Igamma3 (At1g51440), a plastid lipase with a high substrate preference for MGDG, and is sustained by further increases in LOX and allene oxide cyclase mRNA and protein levels.	jasmonic acid	59-61	UDP-Glycosyltransferase superfamily protein	Arabidopsis thaliana	78-82
28510788-7	2015	By contrast, expression pattern of protein phosphatase PP2A3&4 coincided well with the expression of jasmonic acid biosynthetic gene LOX4, suggesting that induction of jasmonic acid biosynthesis is through PP2A3&4.	jasmonic acid	105-118	PLAT/LH2 domain-containing lipoxygenase family protein	Arabidopsis thaliana	137-141
28510788-7	2015	By contrast, expression pattern of protein phosphatase PP2A3&4 coincided well with the expression of jasmonic acid biosynthetic gene LOX4, suggesting that induction of jasmonic acid biosynthesis is through PP2A3&4.	jasmonic acid	105-118	phloem protein 2-A3	Arabidopsis thaliana	210-215
28510788-7	2015	By contrast, expression pattern of protein phosphatase PP2A3&4 coincided well with the expression of jasmonic acid biosynthetic gene LOX4, suggesting that induction of jasmonic acid biosynthesis is through PP2A3&4.	jasmonic acid	172-185	phloem protein 2-A3	Arabidopsis thaliana	55-60
28510788-7	2015	By contrast, expression pattern of protein phosphatase PP2A3&4 coincided well with the expression of jasmonic acid biosynthetic gene LOX4, suggesting that induction of jasmonic acid biosynthesis is through PP2A3&4.	jasmonic acid	172-185	PLAT/LH2 domain-containing lipoxygenase family protein	Arabidopsis thaliana	137-141
28510788-7	2015	By contrast, expression pattern of protein phosphatase PP2A3&4 coincided well with the expression of jasmonic acid biosynthetic gene LOX4, suggesting that induction of jasmonic acid biosynthesis is through PP2A3&4.	jasmonic acid	172-185	phloem protein 2-A3	Arabidopsis thaliana	210-215
25752924-0	2015	Activated expression of AtEDT1/HDG11 promotes lateral root formation in Arabidopsis mutant edt1 by upregulating jasmonate biosynthesis.	jasmonic acid	112-121	homeodomain GLABROUS 11	Arabidopsis thaliana	31-36
25752924-0	2015	Activated expression of AtEDT1/HDG11 promotes lateral root formation in Arabidopsis mutant edt1 by upregulating jasmonate biosynthesis.	jasmonic acid	112-121	homeodomain GLABROUS 11	Arabidopsis thaliana	91-95
25752924-9	2015	Genetic analysis of edt1D opcl1 double mutant also showed that HDG11 was partially dependent on JA in regulating LR formation.	jasmonic acid	96-98	OPC-8:0 CoA ligase1	Arabidopsis thaliana	26-31
25752924-10	2015	Taken together, overexpression of EDT1/HDG11 increases JA level in the root of edt1D by directly upregulating the expressions of several genes encoding JA biosynthesis enzymes to activate auxin signaling and promote lateral root formation.	jasmonic acid	55-57	homeodomain GLABROUS 11	Arabidopsis thaliana	34-38
25752924-10	2015	Taken together, overexpression of EDT1/HDG11 increases JA level in the root of edt1D by directly upregulating the expressions of several genes encoding JA biosynthesis enzymes to activate auxin signaling and promote lateral root formation.	jasmonic acid	55-57	homeodomain GLABROUS 11	Arabidopsis thaliana	39-44
25752924-10	2015	Taken together, overexpression of EDT1/HDG11 increases JA level in the root of edt1D by directly upregulating the expressions of several genes encoding JA biosynthesis enzymes to activate auxin signaling and promote lateral root formation.	jasmonic acid	152-154	homeodomain GLABROUS 11	Arabidopsis thaliana	34-38
25752924-10	2015	Taken together, overexpression of EDT1/HDG11 increases JA level in the root of edt1D by directly upregulating the expressions of several genes encoding JA biosynthesis enzymes to activate auxin signaling and promote lateral root formation.	jasmonic acid	152-154	homeodomain GLABROUS 11	Arabidopsis thaliana	39-44
26635826-4	2015	JA levels and 12-oxo-phytodienoic acid reductase 3 (OPR3) expression in flc plants suggest that ABA regulates the induction of the OPR3 gene in roots.	jasmonic acid	0-2	molybdenum cofactor sulfurase	Solanum lycopersicum	72-75
26635826-4	2015	JA levels and 12-oxo-phytodienoic acid reductase 3 (OPR3) expression in flc plants suggest that ABA regulates the induction of the OPR3 gene in roots.	jasmonic acid	0-2	12-oxophytodienoate reductase 3	Solanum lycopersicum	131-135
26635826-5	2015	By contrast, ABA treatment to flc plants leads to a reduction of JA and SA contents.	jasmonic acid	65-67	molybdenum cofactor sulfurase	Solanum lycopersicum	30-33
26363358-10	2015	The 35S::NATA1 and nata1 lines displayed reduced or enhanced clubroot symptoms, respectively, thus suggesting that in Col-0 this pathway was involved in the JA-mediated basal clubroot resistance.	jasmonic acid	157-159	Acyl-CoA N-acyltransferases (NAT) superfamily protein	Arabidopsis thaliana	9-14
26363358-10	2015	The 35S::NATA1 and nata1 lines displayed reduced or enhanced clubroot symptoms, respectively, thus suggesting that in Col-0 this pathway was involved in the JA-mediated basal clubroot resistance.	jasmonic acid	157-159	Acyl-CoA N-acyltransferases (NAT) superfamily protein	Arabidopsis thaliana	19-24
26378098-11	2015	Infection with both pathogens triggers higher jasmonic acid, jasmonoyl-isoleucine accumulation, and jasmonic acid-dependent gene expression in Atdpl1-1 mutants.	jasmonic acid	100-113	dihydrosphingosine phosphate lyase	Arabidopsis thaliana	143-149
26407000-0	2015	Jasmonic acid promotes degreening via MYC2/3/4- and ANAC019/055/072-mediated regulation of major chlorophyll catabolic genes.	jasmonic acid	0-13	Basic helix-loop-helix (bHLH) DNA-binding family protein	Arabidopsis thaliana	38-46
26530088-2	2015	Activation of the JA-signaling pathway is based on the hormone-triggered ubiquitination and removal of transcriptional repressors (JASMONATE-ZIM DOMAIN [JAZ] proteins) by an SCF receptor complex (SCF(COI1)/JAZ).	jasmonic acid	18-20	RNI-like superfamily protein	Arabidopsis thaliana	200-204
26530088-10	2015	Upon perception of JA signal, degradation of JAZ3 by the SCF(COI1) complex releases YABs to activate a subset of JA-regulated genes in leaves leading to anthocyanin accumulation, chlorophyll loss, and reduced bacterial defense.	jasmonic acid	19-21	jasmonate-zim-domain protein 3	Arabidopsis thaliana	45-49
26407000-0	2015	Jasmonic acid promotes degreening via MYC2/3/4- and ANAC019/055/072-mediated regulation of major chlorophyll catabolic genes.	jasmonic acid	0-13	NAC domain containing protein 19	Arabidopsis thaliana	52-59
26407000-7	2015	These results suggest that MYC2/3/4 proteins may mediate jasmonic acid (JA)-induced Chl degradation by directly activating these Chl catabolic genes (CCGs).	jasmonic acid	57-70	Basic helix-loop-helix (bHLH) DNA-binding family protein	Arabidopsis thaliana	27-35
26407000-7	2015	These results suggest that MYC2/3/4 proteins may mediate jasmonic acid (JA)-induced Chl degradation by directly activating these Chl catabolic genes (CCGs).	jasmonic acid	72-74	Basic helix-loop-helix (bHLH) DNA-binding family protein	Arabidopsis thaliana	27-35
26530088-10	2015	Upon perception of JA signal, degradation of JAZ3 by the SCF(COI1) complex releases YABs to activate a subset of JA-regulated genes in leaves leading to anthocyanin accumulation, chlorophyll loss, and reduced bacterial defense.	jasmonic acid	19-21	RNI-like superfamily protein	Arabidopsis thaliana	61-65
26303437-0	2015	The maize transcription factor EREB58 mediates the jasmonate-induced production of sesquiterpene volatiles.	jasmonic acid	51-60	uncharacterized LOC100384381	Zea mays	31-37
26075826-5	2015	The enhanced resistance to F. graminearum infection in the lox1 and lox5 mutants was accompanied by more robust induction of salicylic acid (SA) accumulation and signaling and attenuation of jasmonic acid (JA) signaling in response to infection.	jasmonic acid	191-204	lipoxygenase 1	Arabidopsis thaliana	59-63
26075826-5	2015	The enhanced resistance to F. graminearum infection in the lox1 and lox5 mutants was accompanied by more robust induction of salicylic acid (SA) accumulation and signaling and attenuation of jasmonic acid (JA) signaling in response to infection.	jasmonic acid	191-204	PLAT/LH2 domain-containing lipoxygenase family protein	Arabidopsis thaliana	68-72
26075826-5	2015	The enhanced resistance to F. graminearum infection in the lox1 and lox5 mutants was accompanied by more robust induction of salicylic acid (SA) accumulation and signaling and attenuation of jasmonic acid (JA) signaling in response to infection.	jasmonic acid	206-208	lipoxygenase 1	Arabidopsis thaliana	59-63
26075826-5	2015	The enhanced resistance to F. graminearum infection in the lox1 and lox5 mutants was accompanied by more robust induction of salicylic acid (SA) accumulation and signaling and attenuation of jasmonic acid (JA) signaling in response to infection.	jasmonic acid	206-208	PLAT/LH2 domain-containing lipoxygenase family protein	Arabidopsis thaliana	68-72
26410299-5	2015	We provide genetic and biochemical evidence that the APETALA2 transcription factors (TFs) TARGET OF EAT1 (TOE1) and TOE2 interact with a subset of JAZ (jasmonate-ZIM domain) proteins and repress the transcription of FT. Our results support a scenario that, when plants encounter stress conditions, bioactive JA promotes COI1-dependent degradation of JAZs.	jasmonic acid	147-149	ethylene-forming enzyme	Arabidopsis thaliana	100-104
26410299-5	2015	We provide genetic and biochemical evidence that the APETALA2 transcription factors (TFs) TARGET OF EAT1 (TOE1) and TOE2 interact with a subset of JAZ (jasmonate-ZIM domain) proteins and repress the transcription of FT. Our results support a scenario that, when plants encounter stress conditions, bioactive JA promotes COI1-dependent degradation of JAZs.	jasmonic acid	147-149	related to AP2.7	Arabidopsis thaliana	106-110
26410299-5	2015	We provide genetic and biochemical evidence that the APETALA2 transcription factors (TFs) TARGET OF EAT1 (TOE1) and TOE2 interact with a subset of JAZ (jasmonate-ZIM domain) proteins and repress the transcription of FT. Our results support a scenario that, when plants encounter stress conditions, bioactive JA promotes COI1-dependent degradation of JAZs.	jasmonic acid	147-149	target of early activation tagged (EAT) 2	Arabidopsis thaliana	116-120
26410299-5	2015	We provide genetic and biochemical evidence that the APETALA2 transcription factors (TFs) TARGET OF EAT1 (TOE1) and TOE2 interact with a subset of JAZ (jasmonate-ZIM domain) proteins and repress the transcription of FT. Our results support a scenario that, when plants encounter stress conditions, bioactive JA promotes COI1-dependent degradation of JAZs.	jasmonic acid	147-149	RNI-like superfamily protein	Arabidopsis thaliana	320-324
26423133-5	2015	This susceptibility was coupled with reduced expression of SA-associated genes (PR1.1, PR2.1, PR5.9, CPR5 and SID2) and jasmonic acid (JA)-related gene JAZ8.	jasmonic acid	120-133	jasmonate-zim-domain protein 8	Arabidopsis thaliana	152-156
26423133-5	2015	This susceptibility was coupled with reduced expression of SA-associated genes (PR1.1, PR2.1, PR5.9, CPR5 and SID2) and jasmonic acid (JA)-related gene JAZ8.	jasmonic acid	135-137	jasmonate-zim-domain protein 8	Arabidopsis thaliana	152-156
26258305-6	2015	Here we show that Arabidopsis MYC3 undergoes pronounced conformational changes when bound to the conserved Jas motif of the JAZ9 repressor.	jasmonic acid	107-110	Basic helix-loop-helix (bHLH) DNA-binding family protein	Arabidopsis thaliana	30-34
26258305-6	2015	Here we show that Arabidopsis MYC3 undergoes pronounced conformational changes when bound to the conserved Jas motif of the JAZ9 repressor.	jasmonic acid	107-110	TIFY domain/Divergent CCT motif family protein	Arabidopsis thaliana	124-128
26258305-7	2015	The Jas motif, previously shown to bind to hormone as a partly unwound helix, forms a complete alpha-helix that displaces the amino (N)-terminal helix of MYC3 and becomes an integral part of the MYC N-terminal fold.	jasmonic acid	4-7	Basic helix-loop-helix (bHLH) DNA-binding family protein	Arabidopsis thaliana	154-158
26258305-8	2015	In this position, the Jas helix competitively inhibits MYC3 interaction with the MED25 subunit of the transcriptional Mediator complex.	jasmonic acid	22-25	Basic helix-loop-helix (bHLH) DNA-binding family protein	Arabidopsis thaliana	55-59
26258305-8	2015	In this position, the Jas helix competitively inhibits MYC3 interaction with the MED25 subunit of the transcriptional Mediator complex.	jasmonic acid	22-25	phytochrome and flowering time regulatory protein (PFT1)	Arabidopsis thaliana	81-86
25758208-8	2015	Transcriptome analysis of these mutants identified a so far unrecognized link between AOP2 and jasmonic acid (JA) signaling independent of MYB28 and MYB29.	jasmonic acid	95-108	AOP2	Arabidopsis thaliana	86-90
26320228-7	2015	Using tandem affinity purification, we found JAZ12 to interact with SCF(COI1) components, matching with observed in vivo ubiquitination and with rapid degradation after treatment with JA.	jasmonic acid	45-47	RNI-like superfamily protein	Arabidopsis thaliana	68-77
26034129-8	2015	Moreover, pepr1 pepr2 double mutant plants, which are insensitive to Peps, display a reduced resistance to feeding Spodoptera littoralis larvae and a reduced accumulation of jasmonic acid upon exposure to herbivore oral secretions.	jasmonic acid	174-187	PEP1 receptor 1	Arabidopsis thaliana	10-15
26034129-8	2015	Moreover, pepr1 pepr2 double mutant plants, which are insensitive to Peps, display a reduced resistance to feeding Spodoptera littoralis larvae and a reduced accumulation of jasmonic acid upon exposure to herbivore oral secretions.	jasmonic acid	174-187	PEP1 receptor 2	Arabidopsis thaliana	16-21
25758208-0	2015	The Glucosinolate Biosynthetic Gene AOP2 Mediates Feed-back Regulation of Jasmonic Acid Signaling in Arabidopsis.	jasmonic acid	74-87	AOP2	Arabidopsis thaliana	36-40
25557253-7	2015	The expression patterns of ZmGH3 genes are responsive to several abiotic stresses (salt, drought and cadmium) and major stress-related hormones (abscisic acid, salicylic acid and jasmonic acid).	jasmonic acid	179-192	indole-3-acetic acid amido synthetase	Zea mays	27-32
26454640-5	2015	Chlamydomonas genomic DNA analysis suggests that HPT is encoded by a single gene, HPT1, whose promoter region contains multiple motifs related to regulation by jasmonate, abscisic acid, low temperature and light, and an ATCTA motif presents in genes involved in tocopherol biosynthesis and some photosynthesis-related genes.	jasmonic acid	160-169	uncharacterized protein	Chlamydomonas reinhardtii	82-86
26103991-6	2015	We conclude that ERFs act as a key regulatory hub, integrating ethylene, abscisic acid, jasmonate, and redox signaling in the plant response to a number of abiotic stresses.	jasmonic acid	88-97	ELAV like RNA binding protein 2	Homo sapiens	46-49
26143252-5	2015	Although the jasmonic acid (JA)/ethylene (ET) defense pathway marker gene PLANT DEFENSIN1.2 (PDF1.2) cannot be induced in either med16 or coi1-1, basal transcript levels of PDF1.2 in med16 are significantly lower than in coi1-1.	jasmonic acid	13-26	plant defensin 1.2	Arabidopsis thaliana	93-99
26143252-5	2015	Although the jasmonic acid (JA)/ethylene (ET) defense pathway marker gene PLANT DEFENSIN1.2 (PDF1.2) cannot be induced in either med16 or coi1-1, basal transcript levels of PDF1.2 in med16 are significantly lower than in coi1-1.	jasmonic acid	28-30	plant defensin 1.2	Arabidopsis thaliana	93-99
26253737-2	2015	Previously, it was reported that the synergistic combination of ethylene (ET) and jasmonic acid (JA) was required for accumulation of the maize insect resistance1 (mir1) gene product, a cysteine (Cys) proteinase that is a key defensive protein against chewing insect pests in maize (Zea mays).	jasmonic acid	82-95	maize insect resistance 1	Zea mays	164-168
26253737-2	2015	Previously, it was reported that the synergistic combination of ethylene (ET) and jasmonic acid (JA) was required for accumulation of the maize insect resistance1 (mir1) gene product, a cysteine (Cys) proteinase that is a key defensive protein against chewing insect pests in maize (Zea mays).	jasmonic acid	97-99	maize insect resistance 1	Zea mays	164-168
25758208-8	2015	Transcriptome analysis of these mutants identified a so far unrecognized link between AOP2 and jasmonic acid (JA) signaling independent of MYB28 and MYB29.	jasmonic acid	110-112	AOP2	Arabidopsis thaliana	86-90
25758208-9	2015	Thus, AOP2 is part of a regulatory feed-back loop linking glucosinolate biosynthesis and JA signaling and thereby allows the glucosinolate pathway to influence JA sensitivity.	jasmonic acid	89-91	AOP2	Arabidopsis thaliana	6-10
25758208-9	2015	Thus, AOP2 is part of a regulatory feed-back loop linking glucosinolate biosynthesis and JA signaling and thereby allows the glucosinolate pathway to influence JA sensitivity.	jasmonic acid	160-162	AOP2	Arabidopsis thaliana	6-10
26176841-3	2015	FIN219/JAR1 is a jasmonic acid (JA)-conjugating enzyme responsible for the formation of JA-isoleucine.	jasmonic acid	17-30	Auxin-responsive GH3 family protein	Arabidopsis thaliana	0-6
26176841-3	2015	FIN219/JAR1 is a jasmonic acid (JA)-conjugating enzyme responsible for the formation of JA-isoleucine.	jasmonic acid	17-30	Auxin-responsive GH3 family protein	Arabidopsis thaliana	7-11
26176841-3	2015	FIN219/JAR1 is a jasmonic acid (JA)-conjugating enzyme responsible for the formation of JA-isoleucine.	jasmonic acid	7-9	Auxin-responsive GH3 family protein	Arabidopsis thaliana	0-6
25409942-7	2015	In addition, adc2 mutants showed increased basal expression of salicylic acid- and jasmonic acid-dependent PR genes.	jasmonic acid	83-96	arginine decarboxylase 2	Arabidopsis thaliana	13-17
25809153-8	2015	Transcriptomic analysis indicates that the CtHSR1 transgenic plants overexpressed a hundred of genes, including many relevant to stress defense such as LOX4 (involved in jasmonic acid synthesis) and P5CS1 (involved in proline biosynthesis).	jasmonic acid	170-183	PLAT/LH2 domain-containing lipoxygenase family protein	Arabidopsis thaliana	152-156
26163577-1	2015	MYC2 is an important regulator for jasmonic acid (JA) signaling, but little is known about its posttranslational regulation.	jasmonic acid	35-48	Basic helix-loop-helix (bHLH) DNA-binding family protein	Arabidopsis thaliana	0-4
26163577-1	2015	MYC2 is an important regulator for jasmonic acid (JA) signaling, but little is known about its posttranslational regulation.	jasmonic acid	50-52	Basic helix-loop-helix (bHLH) DNA-binding family protein	Arabidopsis thaliana	0-4
26198069-6	2015	JA signaling is required for optimum stomatal infection in AHA1-active plants.	jasmonic acid	0-2	H[+]-ATPase 1	Arabidopsis thaliana	59-63
26353406-2	2015	The wild-type plants responded to JA by an increase in the activities of Cu/Zn superoxide dismutase, catalase, and guaiacol peroxidase, while there was no change in the case of the mutant plants.	jasmonic acid	34-36	catalase 2	Arabidopsis thaliana	101-109
26353406-2	2015	The wild-type plants responded to JA by an increase in the activities of Cu/Zn superoxide dismutase, catalase, and guaiacol peroxidase, while there was no change in the case of the mutant plants.	jasmonic acid	34-36	peroxidase	Arabidopsis thaliana	124-134
25788731-6	2015	Mutated JA perception by coi1 disrupted the RGLG3- and RGLG4-related response to FB1 and interfered with their roles in cell death.	jasmonic acid	8-10	Copine (Calcium-dependent phospholipid-binding protein) family	Arabidopsis thaliana	44-49
26070206-6	2015	In vitro transcription assays and whole-plant approaches revealed that myc2-322B is a dosage-dependent gain-of-function mutant that can amplify JA growth responses.	jasmonic acid	144-146	Basic helix-loop-helix (bHLH) DNA-binding family protein	Arabidopsis thaliana	71-75
26070206-7	2015	Moreover, myc2-322B displayed extreme hypersensitivity to JA that totally suppressed root elongation.	jasmonic acid	58-60	Basic helix-loop-helix (bHLH) DNA-binding family protein	Arabidopsis thaliana	10-14
26070206-9	2015	Furthermore, in a JA-deficient mutant background, ninja1 myc2-322B still repressed root elongation, indicating that it is possible to generate JA-responses in the absence of JA.	jasmonic acid	18-20	Basic helix-loop-helix (bHLH) DNA-binding family protein	Arabidopsis thaliana	57-61
26070206-9	2015	Furthermore, in a JA-deficient mutant background, ninja1 myc2-322B still repressed root elongation, indicating that it is possible to generate JA-responses in the absence of JA.	jasmonic acid	143-145	Basic helix-loop-helix (bHLH) DNA-binding family protein	Arabidopsis thaliana	57-61
26070206-9	2015	Furthermore, in a JA-deficient mutant background, ninja1 myc2-322B still repressed root elongation, indicating that it is possible to generate JA-responses in the absence of JA.	jasmonic acid	143-145	Basic helix-loop-helix (bHLH) DNA-binding family protein	Arabidopsis thaliana	57-61
26071420-4	2015	This study revealed one of the mechanisms underlying JA-induced leaf senescence: antagonistic interactions of the bHLH subgroup IIIe factors MYC2, MYC3, and MYC4 with the bHLH subgroup IIId factors bHLH03, bHLH13, bHLH14, and bHLH17.	jasmonic acid	53-55	Basic helix-loop-helix (bHLH) DNA-binding family protein	Arabidopsis thaliana	141-145
26071420-4	2015	This study revealed one of the mechanisms underlying JA-induced leaf senescence: antagonistic interactions of the bHLH subgroup IIIe factors MYC2, MYC3, and MYC4 with the bHLH subgroup IIId factors bHLH03, bHLH13, bHLH14, and bHLH17.	jasmonic acid	53-55	Basic helix-loop-helix (bHLH) DNA-binding family protein	Arabidopsis thaliana	147-151
26071420-4	2015	This study revealed one of the mechanisms underlying JA-induced leaf senescence: antagonistic interactions of the bHLH subgroup IIIe factors MYC2, MYC3, and MYC4 with the bHLH subgroup IIId factors bHLH03, bHLH13, bHLH14, and bHLH17.	jasmonic acid	53-55	Basic helix-loop-helix (bHLH) DNA-binding family protein	Arabidopsis thaliana	157-161
26071420-5	2015	We showed that MYC2, MYC3, and MYC4 function redundantly to activate JA-induced leaf senescence.	jasmonic acid	69-71	Basic helix-loop-helix (bHLH) DNA-binding family protein	Arabidopsis thaliana	15-19
26071420-5	2015	We showed that MYC2, MYC3, and MYC4 function redundantly to activate JA-induced leaf senescence.	jasmonic acid	69-71	Basic helix-loop-helix (bHLH) DNA-binding family protein	Arabidopsis thaliana	21-25
26071420-5	2015	We showed that MYC2, MYC3, and MYC4 function redundantly to activate JA-induced leaf senescence.	jasmonic acid	69-71	Basic helix-loop-helix (bHLH) DNA-binding family protein	Arabidopsis thaliana	31-35
26071420-7	2015	Interestingly, plants have evolved an elaborate feedback regulation mechanism to modulate JA-induced leaf senescence: The bHLH subgroup IIId factors (bHLH03, bHLH13, bHLH14, and bHLH17) bind to the promoter of SAG29 and repress its expression to attenuate MYC2/MYC3/MYC4-activated JA-induced leaf senescence.	jasmonic acid	90-92	senescence-associated gene 29	Arabidopsis thaliana	210-215
26071420-7	2015	Interestingly, plants have evolved an elaborate feedback regulation mechanism to modulate JA-induced leaf senescence: The bHLH subgroup IIId factors (bHLH03, bHLH13, bHLH14, and bHLH17) bind to the promoter of SAG29 and repress its expression to attenuate MYC2/MYC3/MYC4-activated JA-induced leaf senescence.	jasmonic acid	90-92	Basic helix-loop-helix (bHLH) DNA-binding family protein	Arabidopsis thaliana	256-260
26071420-7	2015	Interestingly, plants have evolved an elaborate feedback regulation mechanism to modulate JA-induced leaf senescence: The bHLH subgroup IIId factors (bHLH03, bHLH13, bHLH14, and bHLH17) bind to the promoter of SAG29 and repress its expression to attenuate MYC2/MYC3/MYC4-activated JA-induced leaf senescence.	jasmonic acid	90-92	Basic helix-loop-helix (bHLH) DNA-binding family protein	Arabidopsis thaliana	261-265
26071420-7	2015	Interestingly, plants have evolved an elaborate feedback regulation mechanism to modulate JA-induced leaf senescence: The bHLH subgroup IIId factors (bHLH03, bHLH13, bHLH14, and bHLH17) bind to the promoter of SAG29 and repress its expression to attenuate MYC2/MYC3/MYC4-activated JA-induced leaf senescence.	jasmonic acid	90-92	Basic helix-loop-helix (bHLH) DNA-binding family protein	Arabidopsis thaliana	266-270
26071420-7	2015	Interestingly, plants have evolved an elaborate feedback regulation mechanism to modulate JA-induced leaf senescence: The bHLH subgroup IIId factors (bHLH03, bHLH13, bHLH14, and bHLH17) bind to the promoter of SAG29 and repress its expression to attenuate MYC2/MYC3/MYC4-activated JA-induced leaf senescence.	jasmonic acid	281-283	senescence-associated gene 29	Arabidopsis thaliana	210-215
26071420-7	2015	Interestingly, plants have evolved an elaborate feedback regulation mechanism to modulate JA-induced leaf senescence: The bHLH subgroup IIId factors (bHLH03, bHLH13, bHLH14, and bHLH17) bind to the promoter of SAG29 and repress its expression to attenuate MYC2/MYC3/MYC4-activated JA-induced leaf senescence.	jasmonic acid	281-283	Basic helix-loop-helix (bHLH) DNA-binding family protein	Arabidopsis thaliana	256-260
26071420-7	2015	Interestingly, plants have evolved an elaborate feedback regulation mechanism to modulate JA-induced leaf senescence: The bHLH subgroup IIId factors (bHLH03, bHLH13, bHLH14, and bHLH17) bind to the promoter of SAG29 and repress its expression to attenuate MYC2/MYC3/MYC4-activated JA-induced leaf senescence.	jasmonic acid	281-283	Basic helix-loop-helix (bHLH) DNA-binding family protein	Arabidopsis thaliana	261-265
26071420-7	2015	Interestingly, plants have evolved an elaborate feedback regulation mechanism to modulate JA-induced leaf senescence: The bHLH subgroup IIId factors (bHLH03, bHLH13, bHLH14, and bHLH17) bind to the promoter of SAG29 and repress its expression to attenuate MYC2/MYC3/MYC4-activated JA-induced leaf senescence.	jasmonic acid	281-283	Basic helix-loop-helix (bHLH) DNA-binding family protein	Arabidopsis thaliana	266-270
25985302-6	2015	In particular was an overall significant enrichment for jasmonic acid (JA) mediated processes in the esr1-1 down-regulated dataset.	jasmonic acid	56-69	Integrase-type DNA-binding superfamily protein	Arabidopsis thaliana	101-107
25985302-6	2015	In particular was an overall significant enrichment for jasmonic acid (JA) mediated processes in the esr1-1 down-regulated dataset.	jasmonic acid	71-73	Integrase-type DNA-binding superfamily protein	Arabidopsis thaliana	101-107
25842204-4	2015	Iturin A activated the transcription of defense genes PR1 and PDF1.2 through the SA and JA signaling pathways, respectively.	jasmonic acid	88-90	pathogenesis-related protein 1	Arabidopsis thaliana	54-57
25842204-4	2015	Iturin A activated the transcription of defense genes PR1 and PDF1.2 through the SA and JA signaling pathways, respectively.	jasmonic acid	88-90	protodermal factor 1	Arabidopsis thaliana	62-66
25788731-6	2015	Mutated JA perception by coi1 disrupted the RGLG3- and RGLG4-related response to FB1 and interfered with their roles in cell death.	jasmonic acid	8-10	Ca(2)-dependent phospholipid-binding protein (Copine) family	Arabidopsis thaliana	55-60
25788731-11	2015	Altogether, these data suggest that the JA pathway is hijacked by the toxin FB1 to elicit PCD, which is coordinated by Arabidopsis RGLG3 and RGLG4.	jasmonic acid	40-42	Copine (Calcium-dependent phospholipid-binding protein) family	Arabidopsis thaliana	131-136
25788731-11	2015	Altogether, these data suggest that the JA pathway is hijacked by the toxin FB1 to elicit PCD, which is coordinated by Arabidopsis RGLG3 and RGLG4.	jasmonic acid	40-42	Ca(2)-dependent phospholipid-binding protein (Copine) family	Arabidopsis thaliana	141-146
25736059-4	2015	JA-dependent gene expression and the levels of several JA metabolites were elevated in a growth phase-dependent manner in cpk28, and accumulation of JA metabolites was confined locally to the central rosette tissue.	jasmonic acid	55-57	calcium-dependent protein kinase 28	Arabidopsis thaliana	122-127
25724638-5	2015	The reaction is catalyzed by the Brassicaceae-specific cytochrome P450 monooxygenase CYP705A1 and is transiently induced in a jasmonate-dependent manner by infection with the root-rot pathogen Pythium irregulare.	jasmonic acid	126-135	cytochrome P450, family 705, subfamily A, polypeptide 1	Arabidopsis thaliana	85-93
25736059-0	2015	The calcium-dependent protein kinase CPK28 regulates development by inducing growth phase-specific, spatially restricted alterations in jasmonic acid levels independent of defense responses in Arabidopsis.	jasmonic acid	136-149	calcium-dependent protein kinase 28	Arabidopsis thaliana	37-42
25736059-3	2015	cpk28 mutants exhibit growth reduction solely as adult plants, coinciding with altered balance of the phytohormones jasmonic acid (JA) and gibberellic acid (GA).	jasmonic acid	116-129	calcium-dependent protein kinase 28	Arabidopsis thaliana	0-5
25736059-3	2015	cpk28 mutants exhibit growth reduction solely as adult plants, coinciding with altered balance of the phytohormones jasmonic acid (JA) and gibberellic acid (GA).	jasmonic acid	131-133	calcium-dependent protein kinase 28	Arabidopsis thaliana	0-5
25736059-4	2015	JA-dependent gene expression and the levels of several JA metabolites were elevated in a growth phase-dependent manner in cpk28, and accumulation of JA metabolites was confined locally to the central rosette tissue.	jasmonic acid	0-2	calcium-dependent protein kinase 28	Arabidopsis thaliana	122-127
25736059-4	2015	JA-dependent gene expression and the levels of several JA metabolites were elevated in a growth phase-dependent manner in cpk28, and accumulation of JA metabolites was confined locally to the central rosette tissue.	jasmonic acid	55-57	calcium-dependent protein kinase 28	Arabidopsis thaliana	122-127
25774162-9	2015	Jasmonic acid-signaling pathway genes PDF1.2 and ORA59 were constitutively expressed in transgenic plants.	jasmonic acid	0-13	defensin-like protein CAL1	Triticum aestivum	38-44
25774162-10	2015	TaNAC1 overexpression suppressed the expression levels of resistance-related genes PR1 and PR2 involved in SA signaling and AtWRKY70, which functions as a connection node between the JA- and SA-signaling pathways.	jasmonic acid	183-185	NAC domain-containing protein 2	Triticum aestivum	0-6
25774162-10	2015	TaNAC1 overexpression suppressed the expression levels of resistance-related genes PR1 and PR2 involved in SA signaling and AtWRKY70, which functions as a connection node between the JA- and SA-signaling pathways.	jasmonic acid	183-185	WRKY DNA-binding protein 70	Arabidopsis thaliana	124-132
25774162-11	2015	Collectively, TaNAC1 is a novel NAC member of the NAC1 subgroup, negatively regulates plant disease resistance, and may modulate plant JA- and SA-signaling defense cascades.	jasmonic acid	135-137	NAC domain-containing protein 2	Triticum aestivum	14-20
25774162-11	2015	Collectively, TaNAC1 is a novel NAC member of the NAC1 subgroup, negatively regulates plant disease resistance, and may modulate plant JA- and SA-signaling defense cascades.	jasmonic acid	135-137	NAC domain-containing protein 2	Triticum aestivum	16-20
25266238-5	2015	With increase in severity of CS especially in non-acclimated plants, LOX activity decreased along with an increase in MDA and other responses helped increase or maintaine unsaturated fatty acids (FAs) whereas in acclimated plants (moderate CS), increasing of LOX activity along with a decrease in MDA indicates probably its role in secondary metabolites like jasmonic acid signaling pathway.	jasmonic acid	359-372	LOC543232	Triticum aestivum	69-72
25146897-2	2015	Arabidopsis thaliana CORONATINE INSENSITIVE 1 encodes a JA receptor and functions in the JA-responsive signaling pathway.	jasmonic acid	56-58	RNI-like superfamily protein	Arabidopsis thaliana	21-45
25901085-6	2015	In silico docking experiments and radioligand binding-based reconstitution assays show high-affinity binding of inositol pyrophosphates to the F-box protein COI1-JAZ jasmonate coreceptor complex and suggest that coincidence detection of jasmonate and InsP8 by COI1-JAZ is a critical component in jasmonate-regulated defenses.	jasmonic acid	166-175	RNI-like superfamily protein	Arabidopsis thaliana	157-161
25124736-6	2015	Accordingly, JA marker gene induction, seed germination inhibition and the increased resistance to B. cinerea were attenuated in the JA-insensitive coi1-2 mutant.	jasmonic acid	13-15	RNI-like superfamily protein	Arabidopsis thaliana	148-154
25124736-7	2015	The coi1-2 mutant was partially insensitive to the treatment of EGCG, further implicating the function of EGCG in JA signaling and/or perception.	jasmonic acid	114-116	RNI-like superfamily protein	Arabidopsis thaliana	4-10
25644947-7	2015	Genes related to both the jasmonic acid and salicylic acid signal transduction pathways were up-regulated by interaction with renatured rHFB2-6.	jasmonic acid	26-39	basic leucine zipper and W2 domains 2	Rattus norvegicus	136-143
25692844-6	2015	The tobacco lectin is a 38 kDa nucleocytoplasmic protein which is only expressed upon treatment with jasmonate-related compounds or after insect herbivory.	jasmonic acid	101-110	F-box protein PP2-B11-like	Nicotiana tabacum	12-18
25736059-6	2015	Abolishment of JA biosynthesis or JA signaling led to a full reversion of the cpk28 growth phenotype, while modification of GA signaling did not.	jasmonic acid	15-17	calcium-dependent protein kinase 28	Arabidopsis thaliana	78-83
25736059-6	2015	Abolishment of JA biosynthesis or JA signaling led to a full reversion of the cpk28 growth phenotype, while modification of GA signaling did not.	jasmonic acid	34-36	calcium-dependent protein kinase 28	Arabidopsis thaliana	78-83
25407262-5	2015	OPR3 silencing also leads to a major reduction in the expression of other genes of the jasmonic acid (JA) synthesis and signaling pathways after infection.	jasmonic acid	87-100	12-oxophytodienoate reductase 3	Solanum lycopersicum	0-4
26340066-3	2015	Regulation of proline accumulation in this system seems complex and JA-deficient (jar1-1) and JA-insensitive (jai1) lines accumulating high levels of proline despite their very low ABA levels seems to discard an ABA-dependent response.	jasmonic acid	68-70	Auxin-responsive GH3 family protein	Arabidopsis thaliana	82-88
25534372-7	2014	Candidate regions for adaptation contain genes that regulate physiological acclimation to salt stress, such as abscisic acid and jasmonic acid signaling, including a novel salt-tolerance candidate orthologous to the uncharacterized gene AtCIPK21.	jasmonic acid	129-142	CBL-interacting protein kinase 21	Arabidopsis thaliana	237-245
25407262-5	2015	OPR3 silencing also leads to a major reduction in the expression of other genes of the jasmonic acid (JA) synthesis and signaling pathways after infection.	jasmonic acid	102-104	12-oxophytodienoate reductase 3	Solanum lycopersicum	0-4
25407262-6	2015	These results confirm that in tomato plants, as in Arabidopsis, OPR3 determines OPDA availability for JA biosynthesis.	jasmonic acid	102-104	oxophytodienoate-reductase 3	Arabidopsis thaliana	64-68
25297549-5	2014	KAT2 plays a dominant role in all known aspects of peroxisomal beta-oxidation, including that of fatty acids, pro-auxins, jasmonate precursor oxophytodienoic acid, and trans-cinnamic acid.	jasmonic acid	122-131	potassium channel KAT1-like protein	Arabidopsis thaliana	0-4
25492247-3	2014	Transgenic expression of TENGU induced both male and female sterility in Arabidopsis thaliana flowers similar to those observed in double knockout mutants of auxin response factor 6 (ARF6) and ARF8, which are known to regulate floral development in a jasmonic acid (JA)-dependent manner.	jasmonic acid	251-264	auxin response factor 6	Arabidopsis thaliana	158-181
25492247-3	2014	Transgenic expression of TENGU induced both male and female sterility in Arabidopsis thaliana flowers similar to those observed in double knockout mutants of auxin response factor 6 (ARF6) and ARF8, which are known to regulate floral development in a jasmonic acid (JA)-dependent manner.	jasmonic acid	251-264	auxin response factor 6	Arabidopsis thaliana	183-187
25492247-3	2014	Transgenic expression of TENGU induced both male and female sterility in Arabidopsis thaliana flowers similar to those observed in double knockout mutants of auxin response factor 6 (ARF6) and ARF8, which are known to regulate floral development in a jasmonic acid (JA)-dependent manner.	jasmonic acid	251-264	auxin response factor 8	Arabidopsis thaliana	193-197
25492247-3	2014	Transgenic expression of TENGU induced both male and female sterility in Arabidopsis thaliana flowers similar to those observed in double knockout mutants of auxin response factor 6 (ARF6) and ARF8, which are known to regulate floral development in a jasmonic acid (JA)-dependent manner.	jasmonic acid	266-268	auxin response factor 6	Arabidopsis thaliana	158-181
25108263-0	2014	Absence of endo-1,4-beta-glucanase KOR1 alters the jasmonate-dependent defence response to Pseudomonas syringae in Arabidopsis.	jasmonic acid	51-60	glycosyl hydrolase 9A1	Arabidopsis thaliana	35-39
25344505-3	2014	When NUP1 expression was suppressed in cultured tobacco cells treated with jasmonate, which induces nicotine biosynthesis, the NICOTINE2-locus transcription factor gene ETHYLENE RESPONSE FACTOR189 (ERF189) and its target structural genes, which function in nicotine biosynthesis and transport, were strongly suppressed, resulting in decreased total alkaloid levels.	jasmonic acid	75-84	ethylene-responsive transcription factor 13-like	Nicotiana tabacum	169-196
25344505-3	2014	When NUP1 expression was suppressed in cultured tobacco cells treated with jasmonate, which induces nicotine biosynthesis, the NICOTINE2-locus transcription factor gene ETHYLENE RESPONSE FACTOR189 (ERF189) and its target structural genes, which function in nicotine biosynthesis and transport, were strongly suppressed, resulting in decreased total alkaloid levels.	jasmonic acid	75-84	ethylene-responsive transcription factor 13-like	Nicotiana tabacum	198-204
25344505-8	2014	These results suggest that although jasmonate-activated expression of MYC2 induces the expression of both NUP1 and ERF189, expression of ERF189 may actually be mediated by NUP1.	jasmonic acid	36-45	ethylene-responsive transcription factor 13-like	Nicotiana tabacum	115-121
25344505-8	2014	These results suggest that although jasmonate-activated expression of MYC2 induces the expression of both NUP1 and ERF189, expression of ERF189 may actually be mediated by NUP1.	jasmonic acid	36-45	ethylene-responsive transcription factor 13-like	Nicotiana tabacum	137-143
25450360-14	2014	Our findings suggest that JA promotion of anthocyanin accumulation under far-red light is dependent on phyA signaling pathway, consisting of phyA, COP1, and MYB75.	jasmonic acid	26-28	Transducin/WD40 repeat-like superfamily protein	Arabidopsis thaliana	147-151
25450360-14	2014	Our findings suggest that JA promotion of anthocyanin accumulation under far-red light is dependent on phyA signaling pathway, consisting of phyA, COP1, and MYB75.	jasmonic acid	26-28	production of anthocyanin pigment 1	Arabidopsis thaliana	157-162
25150409-6	2014	Sub-network enrichment analyses of transcriptome data obtained from the various levels of dehydration treatment also identified central hubs of over-represented genes involved in processes such as hormone signaling (i.e., ABA, auxin, ethylene, GA, and JA), response to abiotic stress (DREB1A/2A, RD22) and light (PIF3), phosphorylation (MPK4/6), circadian regulation (CRY2, PHYA), and flowering (AGL20, AP2, FLC).	jasmonic acid	252-254	BURP domain-containing protein	Arabidopsis thaliana	296-300
25227923-8	2014	Conversely, expression of SA marker gene PR-1 was reduced in atom66 plants, while jasmonic acid response genes PDF1.2 and VSP2 have increased transcript abundance.	jasmonic acid	82-95	plant defensin 1.2	Arabidopsis thaliana	111-117
25227923-8	2014	Conversely, expression of SA marker gene PR-1 was reduced in atom66 plants, while jasmonic acid response genes PDF1.2 and VSP2 have increased transcript abundance.	jasmonic acid	82-95	vegetative storage protein 2	Arabidopsis thaliana	122-126
25122482-0	2014	The novel monocot-specific 9-lipoxygenase ZmLOX12 is required to mount an effective jasmonate-mediated defense against Fusarium verticillioides in maize.	jasmonic acid	84-93	linoleate 9S-lipoxygenase4	Zea mays	29-41
25122482-0	2014	The novel monocot-specific 9-lipoxygenase ZmLOX12 is required to mount an effective jasmonate-mediated defense against Fusarium verticillioides in maize.	jasmonic acid	84-93	linoleate 9S-lipoxygenase12	Zea mays	42-49
25210037-4	2014	Cytochromes P450 (CYP) 94B3 and 94C1 were recently shown to sequentially oxidize JA-Ile to hydroxy (12OH-JA-Ile) and dicarboxy (12COOH-JA-Ile) derivatives.	jasmonic acid	81-83	cytochrome P450, family 94, subfamily B, polypeptide 3	Arabidopsis thaliana	0-36
25210037-11	2014	The double loss-of-function mutant of CYP94B3 and ILL6, a JA-Ile amidohydrolase, displayed a JA profile consistent with the collaborative action of the oxidative and the hydrolytic pathways in JA-Ile turnover.	jasmonic acid	58-60	cytochrome P450, family 94, subfamily B, polypeptide 3	Arabidopsis thaliana	38-45
25210037-11	2014	The double loss-of-function mutant of CYP94B3 and ILL6, a JA-Ile amidohydrolase, displayed a JA profile consistent with the collaborative action of the oxidative and the hydrolytic pathways in JA-Ile turnover.	jasmonic acid	58-60	IAA-amino acid hydrolase ILR1-like 6	Arabidopsis thaliana	50-54
25108263-7	2014	Hormonal and gene expression analyses revealed that the jasmonic acid (JA) pathway was activated more in kor1-1 plants with an increase in the JA-biosynthesis gene LOX3 and a greater accumulation of JA.	jasmonic acid	143-145	glycosyl hydrolase 9A1	Arabidopsis thaliana	105-109
25108263-9	2014	In addition, the increase of salicylic acid (SA) in healthy and infected kor1-1 may reflect the complex interaction between JA and SA, which results in the more susceptible phenotype displayed by the infected mutant plants.	jasmonic acid	124-126	glycosyl hydrolase 9A1	Arabidopsis thaliana	73-77
25108263-7	2014	Hormonal and gene expression analyses revealed that the jasmonic acid (JA) pathway was activated more in kor1-1 plants with an increase in the JA-biosynthesis gene LOX3 and a greater accumulation of JA.	jasmonic acid	56-69	glycosyl hydrolase 9A1	Arabidopsis thaliana	105-109
25108263-7	2014	Hormonal and gene expression analyses revealed that the jasmonic acid (JA) pathway was activated more in kor1-1 plants with an increase in the JA-biosynthesis gene LOX3 and a greater accumulation of JA.	jasmonic acid	71-73	glycosyl hydrolase 9A1	Arabidopsis thaliana	105-109
25108263-7	2014	Hormonal and gene expression analyses revealed that the jasmonic acid (JA) pathway was activated more in kor1-1 plants with an increase in the JA-biosynthesis gene LOX3 and a greater accumulation of JA.	jasmonic acid	143-145	glycosyl hydrolase 9A1	Arabidopsis thaliana	105-109
25064075-2	2014	In response to the JA signal, the CORONATINE INSENSITIVE 1 (COI1)-based SCF complexes recruit JASMONATE ZIM-domain (JAZ) repressors for ubiquitination and degradation, and subsequently regulate their downstream signaling components essential for various JA responses.	jasmonic acid	19-21	KIT ligand	Homo sapiens	72-75
25280771-8	2014	Mapman analysis of DEG indicated that many genes were involved in the biotic stress response spanning a range of functions, from a gene encoding a receptor-like kinase to genes involved in triggering defensive responses such as MAPK, transcription factors (WRKY and ERF) and signalling by ethylene (ET) and jasmonic acid (JA) hormones.	jasmonic acid	307-320	ethylene-responsive transcription factor 4	Gossypium hirsutum	266-269
25280771-8	2014	Mapman analysis of DEG indicated that many genes were involved in the biotic stress response spanning a range of functions, from a gene encoding a receptor-like kinase to genes involved in triggering defensive responses such as MAPK, transcription factors (WRKY and ERF) and signalling by ethylene (ET) and jasmonic acid (JA) hormones.	jasmonic acid	322-324	ethylene-responsive transcription factor 4	Gossypium hirsutum	266-269
25103816-1	2014	Low red : far-red ratios reduce jasmonate sensitivity in Arabidopsis seedlings by promoting DELLA degradation and increasing JAZ10 stability.	jasmonic acid	32-41	jasmonate-zim-domain protein 10	Arabidopsis thaliana	125-130
24467527-4	2014	Our data showed that thf1 had higher levels of basal alpha-linolenic acid (alpha-LeA), and methyl jasmonate (JA)-induced alpha-LeA and 12-oxophytodienoic acid (OPDA) than the wild type (WT).	jasmonic acid	109-111	photosystem II reaction center PSB29 protein	Arabidopsis thaliana	21-25
24467527-8	2014	Thus, we conclude that the elevated anthocyanin accumulation in thf1 is attributed to an increase in JA levels.	jasmonic acid	101-103	photosystem II reaction center PSB29 protein	Arabidopsis thaliana	64-68
25010573-7	2014	Expression of SlSRN1 was also induced by salicylic acid, jasmonic acid and 1-amino cyclopropane-1-carboxylic acid and by drought stress.	jasmonic acid	57-70	stress-related NAC1	Solanum lycopersicum	14-20
25453132-2	2014	These small molecules can accumulate at distances up to several cm from sites of damage and this is likely to involve cell-to-cell jasmonate transport.Also, and independently of jasmonate synthesis, transport and perception, different long distance wound signals that stimulate distal jasmonate synthesis are propagated at apparent speeds of several cm min-1 to tissues distal to wounds in a mechanism that involves clade 3 GLUTAMATE RECEPTOR-LIKE (GLR) genes.	jasmonic acid	131-140	CD59 molecule (CD59 blood group)	Homo sapiens	353-358
25453132-2	2014	These small molecules can accumulate at distances up to several cm from sites of damage and this is likely to involve cell-to-cell jasmonate transport.Also, and independently of jasmonate synthesis, transport and perception, different long distance wound signals that stimulate distal jasmonate synthesis are propagated at apparent speeds of several cm min-1 to tissues distal to wounds in a mechanism that involves clade 3 GLUTAMATE RECEPTOR-LIKE (GLR) genes.	jasmonic acid	131-140	glycine receptor alpha 2	Homo sapiens	424-447
25453132-2	2014	These small molecules can accumulate at distances up to several cm from sites of damage and this is likely to involve cell-to-cell jasmonate transport.Also, and independently of jasmonate synthesis, transport and perception, different long distance wound signals that stimulate distal jasmonate synthesis are propagated at apparent speeds of several cm min-1 to tissues distal to wounds in a mechanism that involves clade 3 GLUTAMATE RECEPTOR-LIKE (GLR) genes.	jasmonic acid	131-140	glycine receptor alpha 2	Homo sapiens	449-452
24997606-5	2014	One derivative, coronatine-O-methyloxime (COR-MO), has strong activity in preventing the COI1-JAZ interaction, JAZ degradation and the effects of JA-Ile or COR on several JA-mediated responses in Arabidopsis thaliana.	jasmonic acid	94-96	RNI-like superfamily protein	Arabidopsis thaliana	89-93
25049362-6	2014	The amino acid substitution D94N in bHLH05D94N negatively affects the interaction with JASMONATE-ZIM DOMAIN protein, thereby resulting in constitutive activation of bHLH05 and mimicking jasmonic acid treatment.	jasmonic acid	186-199	jasmonate ZIM-domain protein	Arabidopsis thaliana	87-115
26417317-5	2014	However, in case of IL-1ss, with the same dose (40 mg/Kg), jasmonic acid (11) exhibited significant reduction with 54.2 % followed by crocin (14) (50.2 %) and crocetin (4) (39.8 %) while L-mimosine (12) was found to reduce only 16.3 %.	jasmonic acid	59-72	interleukin 1 complex	Mus musculus	20-24
24973587-1	2014	Nictaba, a lectin accumulating in tobacco (Nicotiana tabacum) leaves treated with jasmonate, is considered to act as a signaling protein in the stress physiology of the plant.	jasmonic acid	82-91	F-box protein PP2-B11-like	Nicotiana tabacum	0-7
24973587-1	2014	Nictaba, a lectin accumulating in tobacco (Nicotiana tabacum) leaves treated with jasmonate, is considered to act as a signaling protein in the stress physiology of the plant.	jasmonic acid	82-91	F-box protein PP2-B11-like	Nicotiana tabacum	11-17
25267093-8	2014	The constitutive expression of SKS13 results in accumulation of reactive oxygen species, which is possibly regulated through the jasmonic acid pathway.	jasmonic acid	129-142	SKU5 similar 13	Arabidopsis thaliana	31-36
24989234-7	2014	ORA59 is the master regulator of the jasmonic acid-ET-induced defense program.	jasmonic acid	37-50	octadecanoid-responsive AP2/ERF 59	Arabidopsis thaliana	0-5
24859518-5	2014	The neomycin-dependent reduced JA-Ile level is partially due to increased CYP94B3 expression and subsequent JA-Ile turn-over to12-hydroxy-JA-Ile.	jasmonic acid	31-33	cytochrome P450, family 94, subfamily B, polypeptide 3	Arabidopsis thaliana	74-81
25036661-13	2014	Consistent with the enhanced susceptibility to necrotrophs, lik1 mutants showed reduced expression of genes involved in jasmonic acid and ethylene signaling pathways.	jasmonic acid	120-133	Leucine-rich repeat transmembrane protein kinase	Arabidopsis thaliana	60-64
32481026-13	2014	Although NPR1 is involved in the cross-talk between the salicylic acid, jasmonic acid and ethylene pathways, understanding the nematode resistance mechanism in plants is still imprecise.	jasmonic acid	72-85	regulatory protein (NPR1)	Arabidopsis thaliana	9-13
24930014-4	2014	qRT-PCR analyses revealed that expression of SlMKK2 and SlMKK4 was strongly induced by B. cinerea and by jasmonic acid and ethylene precursor 1-amino cyclopropane-1-carboxylic acid.	jasmonic acid	105-118	mitogen-activated protein kinase kinase 2	Solanum lycopersicum	45-51
24747016-9	2014	Three genes likely to be related to jasmonic acid- or salicylic acid-dependent plant defense responses, including CAF 1, Cop 8/CSN, and HD, are implicated in the insect-resistance of the transgenic plants.	jasmonic acid	36-49	probable CCR4-associated factor 1 homolog 11	Nicotiana tabacum	114-119
24930014-4	2014	qRT-PCR analyses revealed that expression of SlMKK2 and SlMKK4 was strongly induced by B. cinerea and by jasmonic acid and ethylene precursor 1-amino cyclopropane-1-carboxylic acid.	jasmonic acid	105-118	MAPKK	Solanum lycopersicum	56-62
24726929-4	2014	However, treatments with exogenous JA for 3 days significantly enhanced salt stress tolerance in wheat seedlings by decreasing the concentration of MDA and H2O2, the production rate of O2 - and increasing the transcript levels and activities of SOD, POD, CAT and APX and the contents of GSH, Chl b and Car, which, in turn, enhanced the growth of salt stressed seedlings.	jasmonic acid	35-37	peroxidase-like	Triticum aestivum	250-253
24914891-3	2014	We show that LIF2 loss-of-function in A. thaliana leads to changes in the basal expression of the salicylic acid (SA)- and jasmonic acid (JA)- dependent defense marker genes PR1 and PDF1.2, respectively.	jasmonic acid	123-136	RNA-binding (RRM/RBD/RNP motifs) family protein	Arabidopsis thaliana	13-17
24914891-3	2014	We show that LIF2 loss-of-function in A. thaliana leads to changes in the basal expression of the salicylic acid (SA)- and jasmonic acid (JA)- dependent defense marker genes PR1 and PDF1.2, respectively.	jasmonic acid	138-140	RNA-binding (RRM/RBD/RNP motifs) family protein	Arabidopsis thaliana	13-17
24914891-4	2014	Whereas the expression of genes involved in SA and JA biosynthesis and signaling was also affected in the lif2-1 mutant, no change in SA and JA hormonal contents was detected.	jasmonic acid	51-53	RNA-binding (RRM/RBD/RNP motifs) family protein	Arabidopsis thaliana	106-110
24726929-4	2014	However, treatments with exogenous JA for 3 days significantly enhanced salt stress tolerance in wheat seedlings by decreasing the concentration of MDA and H2O2, the production rate of O2 - and increasing the transcript levels and activities of SOD, POD, CAT and APX and the contents of GSH, Chl b and Car, which, in turn, enhanced the growth of salt stressed seedlings.	jasmonic acid	35-37	catalase-1	Triticum aestivum	255-258
24726929-4	2014	However, treatments with exogenous JA for 3 days significantly enhanced salt stress tolerance in wheat seedlings by decreasing the concentration of MDA and H2O2, the production rate of O2 - and increasing the transcript levels and activities of SOD, POD, CAT and APX and the contents of GSH, Chl b and Car, which, in turn, enhanced the growth of salt stressed seedlings.	jasmonic acid	35-37	POD1	Triticum aestivum	263-266
24845074-8	2014	Also, during Pst DC3000 infection, YSL3 was positively regulated by SA signaling through NPR1 and the upregulation was enhanced in the coi1 mutant that defective in the jasmonic acid (JA) receptor, coronatine insensitive1.	jasmonic acid	169-182	YELLOW STRIPE like 3	Arabidopsis thaliana	35-39
24286169-7	2014	The susceptibility of lox4 mutants was accompanied by increased expression of allene oxide synthase, allene oxide cyclase and ethylene-responsive transcription factor 4, and the accumulation of jasmonic acid, measured in the roots of lox4 mutants.	jasmonic acid	194-207	PLAT/LH2 domain-containing lipoxygenase family protein	Arabidopsis thaliana	22-26
24824488-7	2014	MYC2, MYC3, and MYC4 are required for JA-mediated defenses against the necrotrophic pathogen Botrytis cinerea and for the shade-triggered increased susceptibility, indicating that this negative effect of shade on defense is likely mediated by shade-triggered inactivation of MYC2, MYC3, and MYC4.	jasmonic acid	38-40	Basic helix-loop-helix (bHLH) DNA-binding family protein	Arabidopsis thaliana	0-4
24824488-7	2014	MYC2, MYC3, and MYC4 are required for JA-mediated defenses against the necrotrophic pathogen Botrytis cinerea and for the shade-triggered increased susceptibility, indicating that this negative effect of shade on defense is likely mediated by shade-triggered inactivation of MYC2, MYC3, and MYC4.	jasmonic acid	38-40	Basic helix-loop-helix (bHLH) DNA-binding family protein	Arabidopsis thaliana	6-10
24824488-7	2014	MYC2, MYC3, and MYC4 are required for JA-mediated defenses against the necrotrophic pathogen Botrytis cinerea and for the shade-triggered increased susceptibility, indicating that this negative effect of shade on defense is likely mediated by shade-triggered inactivation of MYC2, MYC3, and MYC4.	jasmonic acid	38-40	Basic helix-loop-helix (bHLH) DNA-binding family protein	Arabidopsis thaliana	16-20
24824488-7	2014	MYC2, MYC3, and MYC4 are required for JA-mediated defenses against the necrotrophic pathogen Botrytis cinerea and for the shade-triggered increased susceptibility, indicating that this negative effect of shade on defense is likely mediated by shade-triggered inactivation of MYC2, MYC3, and MYC4.	jasmonic acid	38-40	Basic helix-loop-helix (bHLH) DNA-binding family protein	Arabidopsis thaliana	275-279
24824488-7	2014	MYC2, MYC3, and MYC4 are required for JA-mediated defenses against the necrotrophic pathogen Botrytis cinerea and for the shade-triggered increased susceptibility, indicating that this negative effect of shade on defense is likely mediated by shade-triggered inactivation of MYC2, MYC3, and MYC4.	jasmonic acid	38-40	Basic helix-loop-helix (bHLH) DNA-binding family protein	Arabidopsis thaliana	281-285
24824488-7	2014	MYC2, MYC3, and MYC4 are required for JA-mediated defenses against the necrotrophic pathogen Botrytis cinerea and for the shade-triggered increased susceptibility, indicating that this negative effect of shade on defense is likely mediated by shade-triggered inactivation of MYC2, MYC3, and MYC4.	jasmonic acid	38-40	Basic helix-loop-helix (bHLH) DNA-binding family protein	Arabidopsis thaliana	291-295
24430866-10	2014	DAD1 and most of its homologs other than DALL4 were fully induced without relying on endogenous JA-Ile production and were only partly affected by JA deficiency, indicating that positive feedback by JA is not necessary for induction of these genes.	jasmonic acid	96-98	alpha/beta-Hydrolases superfamily protein	Arabidopsis thaliana	0-4
24845074-8	2014	Also, during Pst DC3000 infection, YSL3 was positively regulated by SA signaling through NPR1 and the upregulation was enhanced in the coi1 mutant that defective in the jasmonic acid (JA) receptor, coronatine insensitive1.	jasmonic acid	169-182	RNI-like superfamily protein	Arabidopsis thaliana	135-139
24413597-7	2014	Such responses undulated, with a maximum upregulation of the jasmonic acid (JA)/ethylene (ET)-related LOX1 and EIN2 genes and the salt tolerance SOS1 gene at 24 h and that of the salicylic acid (SA)-related PR-1 gene at 48 h after T6 inoculation.	jasmonic acid	61-74	ethylene signaling protein	Solanum lycopersicum	111-115
24413597-7	2014	Such responses undulated, with a maximum upregulation of the jasmonic acid (JA)/ethylene (ET)-related LOX1 and EIN2 genes and the salt tolerance SOS1 gene at 24 h and that of the salicylic acid (SA)-related PR-1 gene at 48 h after T6 inoculation.	jasmonic acid	76-78	ethylene signaling protein	Solanum lycopersicum	111-115
24586453-3	2014	Here we studied the relationship between salicylic acid (SA) or jasmonic acid (JA) signaling and FLS2-mediated signaling by monitoring flg22-triggered responses in known SA or JA related mutants of Arabidopsis thaliana (L.) Heynh.	jasmonic acid	79-81	Leucine-rich receptor-like protein kinase family protein	Arabidopsis thaliana	97-101
24668749-0	2014	Jasmonate-activated MYC2 represses ETHYLENE INSENSITIVE3 activity to antagonize ethylene-promoted apical hook formation in Arabidopsis.	jasmonic acid	0-9	Basic helix-loop-helix (bHLH) DNA-binding family protein	Arabidopsis thaliana	20-24
24668749-0	2014	Jasmonate-activated MYC2 represses ETHYLENE INSENSITIVE3 activity to antagonize ethylene-promoted apical hook formation in Arabidopsis.	jasmonic acid	0-9	Ethylene insensitive 3 family protein	Arabidopsis thaliana	35-56
24668749-4	2014	Here, we report that JA represses hook formation by reducing HLS1 expression.	jasmonic acid	21-23	Acyl-CoA N-acyltransferases (NAT) superfamily protein	Arabidopsis thaliana	61-65
24586453-7	2014	Activation of JA signaling by COR pretreatment suppressed the flg22-triggered oxidative burst and callose accumulation in a coronatine insensitive 1 (COI1) dependent manner.	jasmonic acid	14-16	RNI-like superfamily protein	Arabidopsis thaliana	150-154
24505423-8	2014	Further, fungal-induced RabGAP22 expression was found to be associated with elevated endogenous levels of the plant hormones jasmonic acid (JA) and abscisic acid (ABA).	jasmonic acid	125-138	Ypt/Rab-GAP domain of gyp1p superfamily protein	Arabidopsis thaliana	24-32
24505423-8	2014	Further, fungal-induced RabGAP22 expression was found to be associated with elevated endogenous levels of the plant hormones jasmonic acid (JA) and abscisic acid (ABA).	jasmonic acid	140-142	Ypt/Rab-GAP domain of gyp1p superfamily protein	Arabidopsis thaliana	24-32
24323506-7	2014	The defect in anther dehiscence was due to the down-regulation of genes that participate in jasmonic acid (JA) biosynthesis, such as DAD1/AOS/AOC3/OPR3/OPCL1.	jasmonic acid	92-105	alpha/beta-Hydrolases superfamily protein	Arabidopsis thaliana	133-137
24323506-7	2014	The defect in anther dehiscence was due to the down-regulation of genes that participate in jasmonic acid (JA) biosynthesis, such as DAD1/AOS/AOC3/OPR3/OPCL1.	jasmonic acid	92-105	allene oxide cyclase 3	Arabidopsis thaliana	142-146
24323506-7	2014	The defect in anther dehiscence was due to the down-regulation of genes that participate in jasmonic acid (JA) biosynthesis, such as DAD1/AOS/AOC3/OPR3/OPCL1.	jasmonic acid	92-105	oxophytodienoate-reductase 3	Arabidopsis thaliana	147-151
24323506-7	2014	The defect in anther dehiscence was due to the down-regulation of genes that participate in jasmonic acid (JA) biosynthesis, such as DAD1/AOS/AOC3/OPR3/OPCL1.	jasmonic acid	92-105	OPC-8:0 CoA ligase1	Arabidopsis thaliana	152-157
24323506-7	2014	The defect in anther dehiscence was due to the down-regulation of genes that participate in jasmonic acid (JA) biosynthesis, such as DAD1/AOS/AOC3/OPR3/OPCL1.	jasmonic acid	107-109	alpha/beta-Hydrolases superfamily protein	Arabidopsis thaliana	133-137
24323506-7	2014	The defect in anther dehiscence was due to the down-regulation of genes that participate in jasmonic acid (JA) biosynthesis, such as DAD1/AOS/AOC3/OPR3/OPCL1.	jasmonic acid	107-109	allene oxide cyclase 3	Arabidopsis thaliana	142-146
24323506-7	2014	The defect in anther dehiscence was due to the down-regulation of genes that participate in jasmonic acid (JA) biosynthesis, such as DAD1/AOS/AOC3/OPR3/OPCL1.	jasmonic acid	107-109	oxophytodienoate-reductase 3	Arabidopsis thaliana	147-151
24323506-7	2014	The defect in anther dehiscence was due to the down-regulation of genes that participate in jasmonic acid (JA) biosynthesis, such as DAD1/AOS/AOC3/OPR3/OPCL1.	jasmonic acid	107-109	OPC-8:0 CoA ligase1	Arabidopsis thaliana	152-157
24323506-8	2014	The external application of JA rescued the anther indehiscence in AIF-C and AIF-C+SRDX flowers.	jasmonic acid	28-30	NAC domain containing protein 53	Arabidopsis thaliana	66-69
24323506-8	2014	The external application of JA rescued the anther indehiscence in AIF-C and AIF-C+SRDX flowers.	jasmonic acid	28-30	NAC domain containing protein 53	Arabidopsis thaliana	76-79
23801071-4	2014	The results showed that the method was specific, linear (r >= 0.99) in the range 0.125-1.00 microg mL-1 for JA and ABA and 0.125-5.00 microg mL-1 for SA, and precise (relative standard deviation <=11%), and the limit of detection (0.010 microg g-1 fresh weight) was adequate for quantifying these phytohormones in this type of matrix.	jasmonic acid	111-113	L1 cell adhesion molecule	Mus musculus	102-106
24393452-6	2014	Pretreatment with jasmonic acid (JA) dramatically reversed Hpa Noco2 resistance in the glk1 glk2 double mutant, but only marginally affected the 35S:AtGLK1 plants.	jasmonic acid	18-31	GBF's pro-rich region-interacting factor 1	Arabidopsis thaliana	87-91
24393452-6	2014	Pretreatment with jasmonic acid (JA) dramatically reversed Hpa Noco2 resistance in the glk1 glk2 double mutant, but only marginally affected the 35S:AtGLK1 plants.	jasmonic acid	18-31	GOLDEN2-like 2	Arabidopsis thaliana	92-96
24393452-6	2014	Pretreatment with jasmonic acid (JA) dramatically reversed Hpa Noco2 resistance in the glk1 glk2 double mutant, but only marginally affected the 35S:AtGLK1 plants.	jasmonic acid	33-35	GBF's pro-rich region-interacting factor 1	Arabidopsis thaliana	87-91
24393452-6	2014	Pretreatment with jasmonic acid (JA) dramatically reversed Hpa Noco2 resistance in the glk1 glk2 double mutant, but only marginally affected the 35S:AtGLK1 plants.	jasmonic acid	33-35	GOLDEN2-like 2	Arabidopsis thaliana	92-96
24510720-10	2014	Taken together, these data indicate that DAU/APEM9 plays critical roles in peroxisome biogenesis and function, which is essential for JA production and pollen maturation and germination.	jasmonic acid	134-136	3-phosphoinositide-dependent protein kinase-1	Arabidopsis thaliana	45-50
23939432-8	2014	The NDB1-suppression induced transcriptomic changes associated with protein synthesis and glucosinolate and jasmonate metabolism.	jasmonic acid	108-117	NAD(P)H dehydrogenase B1	Arabidopsis thaliana	4-8
24326670-6	2014	Both the shortened roots and the salinity tolerance were abolished in a background lacking a functional AtMYC2, a key component of the JA and abscisic acid signaling pathway, but were still expressed in a background deficient with respect to abscisic acid synthesis.	jasmonic acid	135-137	Basic helix-loop-helix (bHLH) DNA-binding family protein	Arabidopsis thaliana	104-110
24483714-1	2014	BACKGROUND: Arabidopsis ZBF1/MYC2bHLH transcription factor is a repressor of photomorphogenesis, and acts as a point of cross talk in light, abscisic acid (ABA) and jasmonic acid (JA) signaling pathways.	jasmonic acid	165-178	Basic helix-loop-helix (bHLH) DNA-binding family protein	Arabidopsis thaliana	24-28
24483714-1	2014	BACKGROUND: Arabidopsis ZBF1/MYC2bHLH transcription factor is a repressor of photomorphogenesis, and acts as a point of cross talk in light, abscisic acid (ABA) and jasmonic acid (JA) signaling pathways.	jasmonic acid	165-178	Basic helix-loop-helix (bHLH) DNA-binding family protein	Arabidopsis thaliana	29-33
24483714-1	2014	BACKGROUND: Arabidopsis ZBF1/MYC2bHLH transcription factor is a repressor of photomorphogenesis, and acts as a point of cross talk in light, abscisic acid (ABA) and jasmonic acid (JA) signaling pathways.	jasmonic acid	180-182	Basic helix-loop-helix (bHLH) DNA-binding family protein	Arabidopsis thaliana	24-28
24483714-1	2014	BACKGROUND: Arabidopsis ZBF1/MYC2bHLH transcription factor is a repressor of photomorphogenesis, and acts as a point of cross talk in light, abscisic acid (ABA) and jasmonic acid (JA) signaling pathways.	jasmonic acid	180-182	Basic helix-loop-helix (bHLH) DNA-binding family protein	Arabidopsis thaliana	29-33
24410936-10	2014	Of particular interest are dramatic variations of detected DEGs, putatively involved in ethylene (ET)-, jasmonic acid (JA)-, (reactive oxygen species) ROS-, and (MAP-kinase) MAPK- signaling, among these soybean NILs, implicating their important roles of these signaling in differentiating molecular defense responses.	jasmonic acid	104-117	MAPK	Glycine max	174-178
24468912-5	2014	However, use of a JA biosynthesis defective mutant spr2 as "donor" plants resulted in no induction of defence responses and no change in insect resistance in "receiver" plants, suggesting that JA signalling is required for CMN-mediated interplant communication.	jasmonic acid	18-20	Sp3 transcription factor	Homo sapiens	51-55
24468912-5	2014	However, use of a JA biosynthesis defective mutant spr2 as "donor" plants resulted in no induction of defence responses and no change in insect resistance in "receiver" plants, suggesting that JA signalling is required for CMN-mediated interplant communication.	jasmonic acid	193-195	Sp3 transcription factor	Homo sapiens	51-55
24410936-10	2014	Of particular interest are dramatic variations of detected DEGs, putatively involved in ethylene (ET)-, jasmonic acid (JA)-, (reactive oxygen species) ROS-, and (MAP-kinase) MAPK- signaling, among these soybean NILs, implicating their important roles of these signaling in differentiating molecular defense responses.	jasmonic acid	119-121	MAPK	Glycine max	174-178
24357608-4	2014	Here we show that PROPEP2/PROPEP3 induction upon pathogen challenges is robust against jasmonate, salicylate, or ethylene dysfunction.	jasmonic acid	87-96	elicitor peptide 2 precursor	Arabidopsis thaliana	18-25
24357608-4	2014	Here we show that PROPEP2/PROPEP3 induction upon pathogen challenges is robust against jasmonate, salicylate, or ethylene dysfunction.	jasmonic acid	87-96	elicitor peptide 3 precursor	Arabidopsis thaliana	26-33
24135638-10	2014	miR319 regulates mRNA abundance of a class of transcription factors which control the expression of LOX2 (lipoxygenase 2), a key enzyme in the JA biosynthetic pathway, and thereby regulates JA homeostasis in senescing leaves.	jasmonic acid	143-145	MIR319b	Arabidopsis thaliana	0-6
24277277-8	2014	We also suggested that the MYC2-mediated jasmonic acid signalling pathway may not be involved in the regulation of TIC in controlling the root meristem.	jasmonic acid	41-54	Basic helix-loop-helix (bHLH) DNA-binding family protein	Arabidopsis thaliana	27-31
24272250-10	2014	We provide examples of AT1G21600, which is a subunit in the plastid-encoded RNA polymerase complex, and AT5G56980, which is related to the jasmonic acid signaling pathway.	jasmonic acid	139-152	cotton fiber protein	Arabidopsis thaliana	104-113
24399301-0	2014	Interaction between MYC2 and ETHYLENE INSENSITIVE3 modulates antagonism between jasmonate and ethylene signaling in Arabidopsis.	jasmonic acid	80-89	Basic helix-loop-helix (bHLH) DNA-binding family protein	Arabidopsis thaliana	20-24
24399301-7	2014	Conversely, EIN3 interacts with and represses MYC2 to inhibit JA-induced expression of wound-responsive genes and herbivory-inducible genes and to attenuate JA-regulated plant defense against generalist herbivores.	jasmonic acid	62-64	Ethylene insensitive 3 family protein	Arabidopsis thaliana	12-16
24399301-7	2014	Conversely, EIN3 interacts with and represses MYC2 to inhibit JA-induced expression of wound-responsive genes and herbivory-inducible genes and to attenuate JA-regulated plant defense against generalist herbivores.	jasmonic acid	62-64	Basic helix-loop-helix (bHLH) DNA-binding family protein	Arabidopsis thaliana	46-50
24424094-0	2014	Arabidopsis WRKY57 functions as a node of convergence for jasmonic acid- and auxin-mediated signaling in jasmonic acid-induced leaf senescence.	jasmonic acid	58-71	WRKY DNA-binding protein 57	Arabidopsis thaliana	12-18
24424094-0	2014	Arabidopsis WRKY57 functions as a node of convergence for jasmonic acid- and auxin-mediated signaling in jasmonic acid-induced leaf senescence.	jasmonic acid	105-118	WRKY DNA-binding protein 57	Arabidopsis thaliana	12-18
24424094-8	2014	Consistent with the opposing functions of JA and auxin in JA-induced leaf senescence, JAZ4/8 and IAA29 also displayed opposite functions in JA-induced leaf senescence and competitively interacted with WRKY57.	jasmonic acid	42-44	jasmonate-zim-domain protein 4	Arabidopsis thaliana	86-92
24424094-8	2014	Consistent with the opposing functions of JA and auxin in JA-induced leaf senescence, JAZ4/8 and IAA29 also displayed opposite functions in JA-induced leaf senescence and competitively interacted with WRKY57.	jasmonic acid	42-44	indole-3-acetic acid inducible 29	Arabidopsis thaliana	97-102
24424094-8	2014	Consistent with the opposing functions of JA and auxin in JA-induced leaf senescence, JAZ4/8 and IAA29 also displayed opposite functions in JA-induced leaf senescence and competitively interacted with WRKY57.	jasmonic acid	42-44	WRKY DNA-binding protein 57	Arabidopsis thaliana	201-207
24424094-8	2014	Consistent with the opposing functions of JA and auxin in JA-induced leaf senescence, JAZ4/8 and IAA29 also displayed opposite functions in JA-induced leaf senescence and competitively interacted with WRKY57.	jasmonic acid	58-60	jasmonate-zim-domain protein 4	Arabidopsis thaliana	86-92
24424094-8	2014	Consistent with the opposing functions of JA and auxin in JA-induced leaf senescence, JAZ4/8 and IAA29 also displayed opposite functions in JA-induced leaf senescence and competitively interacted with WRKY57.	jasmonic acid	58-60	indole-3-acetic acid inducible 29	Arabidopsis thaliana	97-102
24424094-8	2014	Consistent with the opposing functions of JA and auxin in JA-induced leaf senescence, JAZ4/8 and IAA29 also displayed opposite functions in JA-induced leaf senescence and competitively interacted with WRKY57.	jasmonic acid	58-60	WRKY DNA-binding protein 57	Arabidopsis thaliana	201-207
24424094-9	2014	Our results suggested that the JA-induced leaf senescence process can be antagonized by auxin via WRKY57.	jasmonic acid	31-33	WRKY DNA-binding protein 57	Arabidopsis thaliana	98-104
24424094-11	2014	Therefore, as a repressor in JA-induced leaf senescence, WRKY57 is a common component of the JA- and auxin-mediated signaling pathways.	jasmonic acid	29-31	WRKY DNA-binding protein 57	Arabidopsis thaliana	57-63
24424094-11	2014	Therefore, as a repressor in JA-induced leaf senescence, WRKY57 is a common component of the JA- and auxin-mediated signaling pathways.	jasmonic acid	93-95	WRKY DNA-binding protein 57	Arabidopsis thaliana	57-63
24135638-10	2014	miR319 regulates mRNA abundance of a class of transcription factors which control the expression of LOX2 (lipoxygenase 2), a key enzyme in the JA biosynthetic pathway, and thereby regulates JA homeostasis in senescing leaves.	jasmonic acid	143-145	lipoxygenase 2	Arabidopsis thaliana	100-104
24135638-10	2014	miR319 regulates mRNA abundance of a class of transcription factors which control the expression of LOX2 (lipoxygenase 2), a key enzyme in the JA biosynthetic pathway, and thereby regulates JA homeostasis in senescing leaves.	jasmonic acid	143-145	lipoxygenase 2	Arabidopsis thaliana	106-120
24399137-4	2014	All the JA responses are disrupted by the COI1 mutations W467 in coi1-1, Q343 (coi1-6), G369E (coi1-4), G98D (coi1-5), G155E (coi1-7), D452A (coi1-9) and L490A (coi1-10), though the coi1-5 mutant (COI1G98D) contains adequate COI1 protein (~ 60% of wild-type).	jasmonic acid	8-10	RNI-like superfamily protein	Arabidopsis thaliana	42-46
25482807-4	2014	These two genes are the closest orthologs of the Arabidopsis JA-producing OPR3 and are the only maize OPRs required for JA biosynthesis.	jasmonic acid	61-63	oxophytodienoate-reductase 3	Arabidopsis thaliana	74-78
24399137-4	2014	All the JA responses are disrupted by the COI1 mutations W467 in coi1-1, Q343 (coi1-6), G369E (coi1-4), G98D (coi1-5), G155E (coi1-7), D452A (coi1-9) and L490A (coi1-10), though the coi1-5 mutant (COI1G98D) contains adequate COI1 protein (~ 60% of wild-type).	jasmonic acid	8-10	RNI-like superfamily protein	Arabidopsis thaliana	65-71
24399137-4	2014	All the JA responses are disrupted by the COI1 mutations W467 in coi1-1, Q343 (coi1-6), G369E (coi1-4), G98D (coi1-5), G155E (coi1-7), D452A (coi1-9) and L490A (coi1-10), though the coi1-5 mutant (COI1G98D) contains adequate COI1 protein (~ 60% of wild-type).	jasmonic acid	8-10	RNI-like superfamily protein	Arabidopsis thaliana	79-85
24399137-4	2014	All the JA responses are disrupted by the COI1 mutations W467 in coi1-1, Q343 (coi1-6), G369E (coi1-4), G98D (coi1-5), G155E (coi1-7), D452A (coi1-9) and L490A (coi1-10), though the coi1-5 mutant (COI1G98D) contains adequate COI1 protein (~ 60% of wild-type).	jasmonic acid	8-10	RNI-like superfamily protein	Arabidopsis thaliana	95-101
24399137-4	2014	All the JA responses are disrupted by the COI1 mutations W467 in coi1-1, Q343 (coi1-6), G369E (coi1-4), G98D (coi1-5), G155E (coi1-7), D452A (coi1-9) and L490A (coi1-10), though the coi1-5 mutant (COI1G98D) contains adequate COI1 protein (~ 60% of wild-type).	jasmonic acid	8-10	RNI-like superfamily protein	Arabidopsis thaliana	110-116
24399137-4	2014	All the JA responses are disrupted by the COI1 mutations W467 in coi1-1, Q343 (coi1-6), G369E (coi1-4), G98D (coi1-5), G155E (coi1-7), D452A (coi1-9) and L490A (coi1-10), though the coi1-5 mutant (COI1G98D) contains adequate COI1 protein (~ 60% of wild-type).	jasmonic acid	8-10	RNI-like superfamily protein	Arabidopsis thaliana	126-132
24399137-4	2014	All the JA responses are disrupted by the COI1 mutations W467 in coi1-1, Q343 (coi1-6), G369E (coi1-4), G98D (coi1-5), G155E (coi1-7), D452A (coi1-9) and L490A (coi1-10), though the coi1-5 mutant (COI1G98D) contains adequate COI1 protein (~ 60% of wild-type).	jasmonic acid	8-10	RNI-like superfamily protein	Arabidopsis thaliana	142-148
24399137-4	2014	All the JA responses are disrupted by the COI1 mutations W467 in coi1-1, Q343 (coi1-6), G369E (coi1-4), G98D (coi1-5), G155E (coi1-7), D452A (coi1-9) and L490A (coi1-10), though the coi1-5 mutant (COI1G98D) contains adequate COI1 protein (~ 60% of wild-type).	jasmonic acid	8-10	RNI-like superfamily protein	Arabidopsis thaliana	161-168
24399137-4	2014	All the JA responses are disrupted by the COI1 mutations W467 in coi1-1, Q343 (coi1-6), G369E (coi1-4), G98D (coi1-5), G155E (coi1-7), D452A (coi1-9) and L490A (coi1-10), though the coi1-5 mutant (COI1G98D) contains adequate COI1 protein (~ 60% of wild-type).	jasmonic acid	8-10	RNI-like superfamily protein	Arabidopsis thaliana	182-188
24399137-4	2014	All the JA responses are disrupted by the COI1 mutations W467 in coi1-1, Q343 (coi1-6), G369E (coi1-4), G98D (coi1-5), G155E (coi1-7), D452A (coi1-9) and L490A (coi1-10), though the coi1-5 mutant (COI1G98D) contains adequate COI1 protein (~ 60% of wild-type).	jasmonic acid	8-10	RNI-like superfamily protein	Arabidopsis thaliana	197-201
24416038-1	2013	In Arabidopsis, the MYC2 transcription factor on the one hand and the AP2/ERF transcription factors ORA59 and ERF1 on the other hand regulate distinct branches of the jasmonic acid (JA) signaling pathway in an antagonistic fashion, co-regulated by abscisic acid (ABA) and ethylene, respectively.	jasmonic acid	167-180	Basic helix-loop-helix (bHLH) DNA-binding family protein	Arabidopsis thaliana	20-24
24416038-1	2013	In Arabidopsis, the MYC2 transcription factor on the one hand and the AP2/ERF transcription factors ORA59 and ERF1 on the other hand regulate distinct branches of the jasmonic acid (JA) signaling pathway in an antagonistic fashion, co-regulated by abscisic acid (ABA) and ethylene, respectively.	jasmonic acid	167-180	Integrase-type DNA-binding superfamily protein	Arabidopsis thaliana	70-73
24416038-1	2013	In Arabidopsis, the MYC2 transcription factor on the one hand and the AP2/ERF transcription factors ORA59 and ERF1 on the other hand regulate distinct branches of the jasmonic acid (JA) signaling pathway in an antagonistic fashion, co-regulated by abscisic acid (ABA) and ethylene, respectively.	jasmonic acid	167-180	octadecanoid-responsive AP2/ERF 59	Arabidopsis thaliana	100-105
24416038-1	2013	In Arabidopsis, the MYC2 transcription factor on the one hand and the AP2/ERF transcription factors ORA59 and ERF1 on the other hand regulate distinct branches of the jasmonic acid (JA) signaling pathway in an antagonistic fashion, co-regulated by abscisic acid (ABA) and ethylene, respectively.	jasmonic acid	167-180	ethylene responsive element binding factor 1	Arabidopsis thaliana	110-114
24416038-1	2013	In Arabidopsis, the MYC2 transcription factor on the one hand and the AP2/ERF transcription factors ORA59 and ERF1 on the other hand regulate distinct branches of the jasmonic acid (JA) signaling pathway in an antagonistic fashion, co-regulated by abscisic acid (ABA) and ethylene, respectively.	jasmonic acid	182-184	Basic helix-loop-helix (bHLH) DNA-binding family protein	Arabidopsis thaliana	20-24
24416038-1	2013	In Arabidopsis, the MYC2 transcription factor on the one hand and the AP2/ERF transcription factors ORA59 and ERF1 on the other hand regulate distinct branches of the jasmonic acid (JA) signaling pathway in an antagonistic fashion, co-regulated by abscisic acid (ABA) and ethylene, respectively.	jasmonic acid	182-184	Integrase-type DNA-binding superfamily protein	Arabidopsis thaliana	70-73
24416038-1	2013	In Arabidopsis, the MYC2 transcription factor on the one hand and the AP2/ERF transcription factors ORA59 and ERF1 on the other hand regulate distinct branches of the jasmonic acid (JA) signaling pathway in an antagonistic fashion, co-regulated by abscisic acid (ABA) and ethylene, respectively.	jasmonic acid	182-184	octadecanoid-responsive AP2/ERF 59	Arabidopsis thaliana	100-105
24416038-1	2013	In Arabidopsis, the MYC2 transcription factor on the one hand and the AP2/ERF transcription factors ORA59 and ERF1 on the other hand regulate distinct branches of the jasmonic acid (JA) signaling pathway in an antagonistic fashion, co-regulated by abscisic acid (ABA) and ethylene, respectively.	jasmonic acid	182-184	ethylene responsive element binding factor 1	Arabidopsis thaliana	110-114
24151308-4	2013	The induction of indolic and aliphatic glucosinolates after treatment with JA and Glu in JA-insensitive mutants, coi1, jar1, and jin1, was compromised.	jasmonic acid	75-77	RNI-like superfamily protein	Arabidopsis thaliana	113-117
24151308-4	2013	The induction of indolic and aliphatic glucosinolates after treatment with JA and Glu in JA-insensitive mutants, coi1, jar1, and jin1, was compromised.	jasmonic acid	75-77	Basic helix-loop-helix (bHLH) DNA-binding family protein	Arabidopsis thaliana	129-133
24151308-5	2013	Moreover, the effect of JA and Glu on glucosinolate contents was dramatically reduced in Glu-insensitive mutants, rgs1-2 and abi5-7.	jasmonic acid	24-26	REGULATOR OF G-PROTEIN SIGNALING 1	Arabidopsis thaliana	114-120
24151308-5	2013	Moreover, the effect of JA and Glu on glucosinolate contents was dramatically reduced in Glu-insensitive mutants, rgs1-2 and abi5-7.	jasmonic acid	24-26	Basic-leucine zipper (bZIP) transcription factor family protein	Arabidopsis thaliana	125-129
24151308-7	2013	JA signalling, RGS1 (the putative membrane receptor of Glu signalling), and ABI5, are involved in the synergistic effect of JA and Glu on glucosinolate accumulation.	jasmonic acid	124-126	REGULATOR OF G-PROTEIN SIGNALING 1	Arabidopsis thaliana	15-19
24151308-7	2013	JA signalling, RGS1 (the putative membrane receptor of Glu signalling), and ABI5, are involved in the synergistic effect of JA and Glu on glucosinolate accumulation.	jasmonic acid	124-126	Basic-leucine zipper (bZIP) transcription factor family protein	Arabidopsis thaliana	76-80
24080397-6	2013	Examination of six defense-related gene expression by real-time reverse transcription-PCR analysis revealed that harzianolide induces the expression of genes involved in the salicylic acid (PR1 and GLU) and jasmonate/ethylene (JERF3) signaling pathways while crude metabolite extract inhibited some gene expression (CHI-II and PGIP) related to basal defense in tomato plants.	jasmonic acid	207-216	GCC box binding protein C.4	Solanum lycopersicum	227-232
23611666-3	2013	Perception of auxin and JA involves the formation of co-receptor complexes in which hormone-specific E3-ubiquitin ligases of the SKP1-Cullin-F-box protein (SCF) type interact with specific repressor proteins.	jasmonic acid	24-26	S-phase kinase associated protein 1	Homo sapiens	129-133
23611666-3	2013	Perception of auxin and JA involves the formation of co-receptor complexes in which hormone-specific E3-ubiquitin ligases of the SKP1-Cullin-F-box protein (SCF) type interact with specific repressor proteins.	jasmonic acid	24-26	KIT ligand	Homo sapiens	156-159
24157210-5	2013	Knockout mutants of ERF9 (erf9), which were down-regulated in DEAR1ox plants, showed transcriptional promotion of PDF1.2 (PATHOGEN-INDUCIBLE PLANT DEFENSIN) genes, which serve as positive markers for the ethylene/jasmonic acid (JA) signaling pathway and provide enhanced resistance to B. cinerea.	jasmonic acid	213-226	erf domain protein 9	Arabidopsis thaliana	20-24
24157210-5	2013	Knockout mutants of ERF9 (erf9), which were down-regulated in DEAR1ox plants, showed transcriptional promotion of PDF1.2 (PATHOGEN-INDUCIBLE PLANT DEFENSIN) genes, which serve as positive markers for the ethylene/jasmonic acid (JA) signaling pathway and provide enhanced resistance to B. cinerea.	jasmonic acid	228-230	erf domain protein 9	Arabidopsis thaliana	20-24
24157210-5	2013	Knockout mutants of ERF9 (erf9), which were down-regulated in DEAR1ox plants, showed transcriptional promotion of PDF1.2 (PATHOGEN-INDUCIBLE PLANT DEFENSIN) genes, which serve as positive markers for the ethylene/jasmonic acid (JA) signaling pathway and provide enhanced resistance to B. cinerea.	jasmonic acid	213-226	erf domain protein 9	Arabidopsis thaliana	26-30
24157210-5	2013	Knockout mutants of ERF9 (erf9), which were down-regulated in DEAR1ox plants, showed transcriptional promotion of PDF1.2 (PATHOGEN-INDUCIBLE PLANT DEFENSIN) genes, which serve as positive markers for the ethylene/jasmonic acid (JA) signaling pathway and provide enhanced resistance to B. cinerea.	jasmonic acid	213-226	cooperatively regulated by ethylene and jasmonate 1	Arabidopsis thaliana	62-69
24157210-5	2013	Knockout mutants of ERF9 (erf9), which were down-regulated in DEAR1ox plants, showed transcriptional promotion of PDF1.2 (PATHOGEN-INDUCIBLE PLANT DEFENSIN) genes, which serve as positive markers for the ethylene/jasmonic acid (JA) signaling pathway and provide enhanced resistance to B. cinerea.	jasmonic acid	213-226	plant defensin 1.2	Arabidopsis thaliana	114-120
24157210-5	2013	Knockout mutants of ERF9 (erf9), which were down-regulated in DEAR1ox plants, showed transcriptional promotion of PDF1.2 (PATHOGEN-INDUCIBLE PLANT DEFENSIN) genes, which serve as positive markers for the ethylene/jasmonic acid (JA) signaling pathway and provide enhanced resistance to B. cinerea.	jasmonic acid	228-230	erf domain protein 9	Arabidopsis thaliana	26-30
24157210-5	2013	Knockout mutants of ERF9 (erf9), which were down-regulated in DEAR1ox plants, showed transcriptional promotion of PDF1.2 (PATHOGEN-INDUCIBLE PLANT DEFENSIN) genes, which serve as positive markers for the ethylene/jasmonic acid (JA) signaling pathway and provide enhanced resistance to B. cinerea.	jasmonic acid	228-230	cooperatively regulated by ethylene and jasmonate 1	Arabidopsis thaliana	62-69
24157210-5	2013	Knockout mutants of ERF9 (erf9), which were down-regulated in DEAR1ox plants, showed transcriptional promotion of PDF1.2 (PATHOGEN-INDUCIBLE PLANT DEFENSIN) genes, which serve as positive markers for the ethylene/jasmonic acid (JA) signaling pathway and provide enhanced resistance to B. cinerea.	jasmonic acid	228-230	plant defensin 1.2	Arabidopsis thaliana	114-120
24157210-8	2013	These results indicate that the transcriptional repressor ERF9 participates in plant defense mechanisms against necrotic fungi mediated by the DEAR1-dependent ethylene/JA signaling pathway.	jasmonic acid	168-170	erf domain protein 9	Arabidopsis thaliana	58-62
24157210-8	2013	These results indicate that the transcriptional repressor ERF9 participates in plant defense mechanisms against necrotic fungi mediated by the DEAR1-dependent ethylene/JA signaling pathway.	jasmonic acid	168-170	cooperatively regulated by ethylene and jasmonate 1	Arabidopsis thaliana	143-148
23909602-2	2013	The lipoxygenase pathway produces and releases jasmonic acid, involved in the regulation of the plant defense genes, which encodes protease inhibitor (PI) production.	jasmonic acid	47-60	linoleate 9S-lipoxygenase-4	Glycine max	4-16
24074260-9	2013	Exogenous JA application showed a protective effect against Cu stress and significantly increased transcripts of the glutathione S-transferase (GST) gene.	jasmonic acid	10-12	glutathione S-transferase	Triticum aestivum	117-142
24074260-9	2013	Exogenous JA application showed a protective effect against Cu stress and significantly increased transcripts of the glutathione S-transferase (GST) gene.	jasmonic acid	10-12	glutathione S-transferase	Triticum aestivum	144-147
24204266-8	2013	Furthermore, HopZ1a could partially rescue the virulence defect of a P. syringae mutant that lacks the production of coronatine, a JA-mimicking phytotoxin produced by a few P. syringae strains.	jasmonic acid	131-133	D708_p022	Pseudomonas syringae	13-18
24003128-5	2013	All three lines harbored mutations in Novel Interactor of JAZ (NINJA), which encodes part of a repressor complex that negatively regulates JA signaling.	jasmonic acid	58-60	Putative interactor of JAZ	Arabidopsis thaliana	63-68
24003128-7	2013	Remarkably, this phenotype and the constitutive JAZ10 expression were still observed in backgrounds lacking the ability to synthesize JA or the key transcriptional activator MYC2.	jasmonic acid	48-50	Basic helix-loop-helix (bHLH) DNA-binding family protein	Arabidopsis thaliana	174-178
24022267-7	2013	The number of feeding scars caused by inoculated adult leafminers in JA-insensitive coi1-1 mutants was higher than that in wild-type plants.	jasmonic acid	69-71	RNI-like superfamily protein	Arabidopsis thaliana	84-90
24022267-8	2013	In addition, adults of the following generation appeared only from coi1-1 mutants and not from wild-type plants, suggesting that the loss of the JA-dependent plant defense converted nonhost plants to accessible host plants.	jasmonic acid	145-147	RNI-like superfamily protein	Arabidopsis thaliana	67-73
24300304-5	2013	This addendum addressed the question whether the increased JA-Ile levels found in coi1 are responsible for its tolerance phenotype.	jasmonic acid	59-61	RNI-like superfamily protein	Arabidopsis thaliana	82-86
24300304-6	2013	Based on the evidence that the JA-Ile-deficient dde2-2 coi1-t double mutant is as tolerant as coi1-t, we conclude that increased JA-Ile levels do not protect Arabidopsis against the fungus in the absence of COI1.	jasmonic acid	31-33	RNI-like superfamily protein	Arabidopsis thaliana	55-59
23749099-8	2013	Gene expression profiling indicates that both AtWRKY28 and AtWRKY75 are transcriptional regulators of salicylic acid (SA)- and jasmonic acid/ethylene (JA/ET)-dependent defense signaling pathways, AtWRKY28 and AtWRKY75 mainly active JA/ET pathway to defend Arabidopsis against S. sclerotiorum and oxalic acid stress.	jasmonic acid	127-140	WRKY DNA-binding protein 28	Arabidopsis thaliana	46-54
23749099-8	2013	Gene expression profiling indicates that both AtWRKY28 and AtWRKY75 are transcriptional regulators of salicylic acid (SA)- and jasmonic acid/ethylene (JA/ET)-dependent defense signaling pathways, AtWRKY28 and AtWRKY75 mainly active JA/ET pathway to defend Arabidopsis against S. sclerotiorum and oxalic acid stress.	jasmonic acid	127-140	WRKY DNA-binding protein 75	Arabidopsis thaliana	59-67
23749099-8	2013	Gene expression profiling indicates that both AtWRKY28 and AtWRKY75 are transcriptional regulators of salicylic acid (SA)- and jasmonic acid/ethylene (JA/ET)-dependent defense signaling pathways, AtWRKY28 and AtWRKY75 mainly active JA/ET pathway to defend Arabidopsis against S. sclerotiorum and oxalic acid stress.	jasmonic acid	127-140	WRKY DNA-binding protein 28	Arabidopsis thaliana	196-204
23749099-8	2013	Gene expression profiling indicates that both AtWRKY28 and AtWRKY75 are transcriptional regulators of salicylic acid (SA)- and jasmonic acid/ethylene (JA/ET)-dependent defense signaling pathways, AtWRKY28 and AtWRKY75 mainly active JA/ET pathway to defend Arabidopsis against S. sclerotiorum and oxalic acid stress.	jasmonic acid	127-140	WRKY DNA-binding protein 75	Arabidopsis thaliana	209-217
24019872-10	2013	Compared with wild-type plants, the expression levels of genes related to the H2O2 and JA signaling pathways were lower in the Hv-SGT1 silenced plants and higher in the Hv-SGT1 over-expressing plants.	jasmonic acid	87-89	protein SGT1 homolog	Triticum aestivum	130-134
24019872-10	2013	Compared with wild-type plants, the expression levels of genes related to the H2O2 and JA signaling pathways were lower in the Hv-SGT1 silenced plants and higher in the Hv-SGT1 over-expressing plants.	jasmonic acid	87-89	protein SGT1 homolog	Triticum aestivum	172-176
24019872-11	2013	Therefore, the involvement of Hv-SGT1 in H2O2 production correlates with the hypersensitive response and jasmonic acid signaling.	jasmonic acid	105-118	protein SGT1 homolog	Triticum aestivum	33-37
23903439-7	2013	ML3 gene expression is promoted by wounding as well as by the phytohormone jasmonic acid and repressed by ethylene, signals that are known to induce and repress ER body formation, respectively.	jasmonic acid	75-88	ML3	Arabidopsis thaliana	0-3
23909602-2	2013	The lipoxygenase pathway produces and releases jasmonic acid, involved in the regulation of the plant defense genes, which encodes protease inhibitor (PI) production.	jasmonic acid	47-60	protease inhibitor	Glycine max	131-149
23918959-9	2013	qRT-PCR analysis showed that overexpression of TaCPK2-A in rice promoted the expression of OsWRKY45-1, a transcription factor involved in both fungal and bacterial resistance by regulating jasmonic acid and salicylic acid signalling genes.	jasmonic acid	189-202	CPK2A	Triticum aestivum	47-55
23874385-8	2013	In addition, putative genes involved in gibberellin biosynthesis, response to jasmonic acid/gibberellins stimulus, cell wall modification, ethylene biosynthesis, and cell death were down-regulated associating with etr1-1 induced expression.	jasmonic acid	78-91	Signal transduction histidine kinase, hybrid-type, ethylene sensor	Arabidopsis thaliana	214-220
23410518-5	2013	In the JA-defective opr3 mutant, indehiscent anthers show normal timing of endothecium lignification, suggesting that JA does not control this event.	jasmonic acid	7-9	oxophytodienoate-reductase 3	Arabidopsis thaliana	20-24
23297052-0	2013	Arabidopsis brassinosteroid-overproducing gulliver3-D/dwarf4-D mutants exhibit altered responses to jasmonic acid and pathogen.	jasmonic acid	100-113	Cytochrome P450 superfamily protein	Arabidopsis thaliana	54-60
23297052-2	2013	In gul3-D/dwf4-D , the Jasmonate and Salicylate signaling pathways were relatively activated and suppressed, respectively.	jasmonic acid	23-32	Cytochrome P450 superfamily protein	Arabidopsis thaliana	10-14
23297052-7	2013	The degree of root growth inhibition following MeJA treatment was significantly decreased in gul3-1D/dwf4-5D relative to the wild type, suggesting that JA signaling is partially desensitized in gul3-1D.	jasmonic acid	49-51	Cytochrome P450 superfamily protein	Arabidopsis thaliana	101-105
23297052-8	2013	Quantitative RT-PCR analysis of the genes involved in JA and salicylic acid (SA) responses, including MYC2, PDF1.2, CORI3, PR1, and PR2, revealed that JA signaling was preferentially activated in gul3-1D, whereas SA signaling was suppressed.	jasmonic acid	54-56	Basic helix-loop-helix (bHLH) DNA-binding family protein	Arabidopsis thaliana	102-106
23297052-8	2013	Quantitative RT-PCR analysis of the genes involved in JA and salicylic acid (SA) responses, including MYC2, PDF1.2, CORI3, PR1, and PR2, revealed that JA signaling was preferentially activated in gul3-1D, whereas SA signaling was suppressed.	jasmonic acid	54-56	Tyrosine transaminase family protein	Arabidopsis thaliana	116-121
23297052-8	2013	Quantitative RT-PCR analysis of the genes involved in JA and salicylic acid (SA) responses, including MYC2, PDF1.2, CORI3, PR1, and PR2, revealed that JA signaling was preferentially activated in gul3-1D, whereas SA signaling was suppressed.	jasmonic acid	151-153	Basic helix-loop-helix (bHLH) DNA-binding family protein	Arabidopsis thaliana	102-106
23297052-8	2013	Quantitative RT-PCR analysis of the genes involved in JA and salicylic acid (SA) responses, including MYC2, PDF1.2, CORI3, PR1, and PR2, revealed that JA signaling was preferentially activated in gul3-1D, whereas SA signaling was suppressed.	jasmonic acid	151-153	protodermal factor 1	Arabidopsis thaliana	108-112
23297052-8	2013	Quantitative RT-PCR analysis of the genes involved in JA and salicylic acid (SA) responses, including MYC2, PDF1.2, CORI3, PR1, and PR2, revealed that JA signaling was preferentially activated in gul3-1D, whereas SA signaling was suppressed.	jasmonic acid	151-153	Tyrosine transaminase family protein	Arabidopsis thaliana	116-121
23297052-8	2013	Quantitative RT-PCR analysis of the genes involved in JA and salicylic acid (SA) responses, including MYC2, PDF1.2, CORI3, PR1, and PR2, revealed that JA signaling was preferentially activated in gul3-1D, whereas SA signaling was suppressed.	jasmonic acid	151-153	pathogenesis-related protein 1	Arabidopsis thaliana	123-126
23297052-8	2013	Quantitative RT-PCR analysis of the genes involved in JA and salicylic acid (SA) responses, including MYC2, PDF1.2, CORI3, PR1, and PR2, revealed that JA signaling was preferentially activated in gul3-1D, whereas SA signaling was suppressed.	jasmonic acid	151-153	beta-1,3-glucanase 2	Arabidopsis thaliana	132-135
23719892-1	2013	ETHYLENE RESPONSE FACTOR1 (ERF1) is an upstream component in both jasmonate (JA) and ethylene (ET) signaling and is involved in pathogen resistance.	jasmonic acid	66-75	ethylene responsive element binding factor 1	Arabidopsis thaliana	27-31
23719892-1	2013	ETHYLENE RESPONSE FACTOR1 (ERF1) is an upstream component in both jasmonate (JA) and ethylene (ET) signaling and is involved in pathogen resistance.	jasmonic acid	77-79	ethylene responsive element binding factor 1	Arabidopsis thaliana	27-31
23719892-13	2013	ERF1 plays a positive role in salt, drought, and heat stress tolerance by stress-specific gene regulation, which integrates JA, ET, and abscisic acid signals.	jasmonic acid	124-126	ethylene responsive element binding factor 1	Arabidopsis thaliana	0-4
23799112-3	2013	In Nicotiana attenuata RDR1 also regulates plant-insect interactions and is induced by another important signal, jasmonic acid (JA).	jasmonic acid	113-126	RNA-dependent RNA polymerase 1	Arabidopsis thaliana	23-27
23799112-3	2013	In Nicotiana attenuata RDR1 also regulates plant-insect interactions and is induced by another important signal, jasmonic acid (JA).	jasmonic acid	128-130	RNA-dependent RNA polymerase 1	Arabidopsis thaliana	23-27
23603962-6	2013	Effects of AtMYB44 in SA- and JA-mediated defense responses were achieved through direct regulation of WRKY70 expression which acts as an integrator of cross-talk between SA and JA in plant defense responses.	jasmonic acid	30-32	myb domain protein r1	Arabidopsis thaliana	11-18
23603962-8	2013	This result shows that AtMYB44 is an integrator of cross-talk between SA and JA in plant defense responses.	jasmonic acid	77-79	myb domain protein r1	Arabidopsis thaliana	23-30
23675497-10	2013	The addition of JAS reversed the inhibitory effects of microgravity on the responsiveness of Cbfa1 to BMP2.	jasmonic acid	16-19	RUNX family transcription factor 2	Homo sapiens	93-98
23675497-10	2013	The addition of JAS reversed the inhibitory effects of microgravity on the responsiveness of Cbfa1 to BMP2.	jasmonic acid	16-19	bone morphogenetic protein 2	Homo sapiens	102-106
23852442-2	2013	Jasmonoyl-isoleucine, an amino acid conjugate of jasmonic acid (JA), is perceived by the protein complex composed of the F-box protein CORONATINE INSENSITIVE1 (COI1) and JASMONATE ZIM DOMAIN (JAZ) proteins, leading to the ubiquitin-dependent degradation of JAZ proteins.	jasmonic acid	49-62	RNI-like superfamily protein	Arabidopsis thaliana	160-164
23852442-2	2013	Jasmonoyl-isoleucine, an amino acid conjugate of jasmonic acid (JA), is perceived by the protein complex composed of the F-box protein CORONATINE INSENSITIVE1 (COI1) and JASMONATE ZIM DOMAIN (JAZ) proteins, leading to the ubiquitin-dependent degradation of JAZ proteins.	jasmonic acid	64-66	RNI-like superfamily protein	Arabidopsis thaliana	160-164
23617415-3	2013	Resistance in wrky18 wrky40 double mutant plants is accompanied by massive transcriptional reprogramming, imbalance in salicylic acid (SA) and jasmonic acid (JA) signaling, altered ENHANCED DISEASE SUSCEPTIBILITY1 (EDS1) expression, and accumulation of the phytoalexin camalexin.	jasmonic acid	143-156	WRKY DNA-binding protein 18	Arabidopsis thaliana	14-20
23617415-3	2013	Resistance in wrky18 wrky40 double mutant plants is accompanied by massive transcriptional reprogramming, imbalance in salicylic acid (SA) and jasmonic acid (JA) signaling, altered ENHANCED DISEASE SUSCEPTIBILITY1 (EDS1) expression, and accumulation of the phytoalexin camalexin.	jasmonic acid	143-156	WRKY DNA-binding protein 40	Arabidopsis thaliana	21-27
23617415-3	2013	Resistance in wrky18 wrky40 double mutant plants is accompanied by massive transcriptional reprogramming, imbalance in salicylic acid (SA) and jasmonic acid (JA) signaling, altered ENHANCED DISEASE SUSCEPTIBILITY1 (EDS1) expression, and accumulation of the phytoalexin camalexin.	jasmonic acid	158-160	WRKY DNA-binding protein 18	Arabidopsis thaliana	14-20
23617415-3	2013	Resistance in wrky18 wrky40 double mutant plants is accompanied by massive transcriptional reprogramming, imbalance in salicylic acid (SA) and jasmonic acid (JA) signaling, altered ENHANCED DISEASE SUSCEPTIBILITY1 (EDS1) expression, and accumulation of the phytoalexin camalexin.	jasmonic acid	158-160	WRKY DNA-binding protein 40	Arabidopsis thaliana	21-27
23683924-10	2013	The transcription of GmICHG in the roots was also sensitive to a variety of stresses on the roots, such as flooding, elicitation with yeast extract, drought, and treatment with plant hormones such as abscisic, salicylic, and jasmonic acids and ethylene.	jasmonic acid	225-239	isoflavone conjugate-specific beta-glucosidase	Glycine max	21-27
23210597-7	2013	While most attention on glutathione functions in biotic stress responses has been focused on the thiol-regulated protein NPR1, a comparison of JA-linked gene expression in cat2 cad2 and cat2 npr1 double mutants provides evidence that glutathione acts through other components to regulate the response of this pathway to oxidative stress.	jasmonic acid	143-145	solute carrier family 7 member 2	Homo sapiens	172-176
23632853-2	2013	A key feature of all JAZ proteins is the highly conserved Jas motif, which mediates both JAZ degradation and JAZ binding to the transcription factor MYC2.	jasmonic acid	58-61	Basic helix-loop-helix (bHLH) DNA-binding family protein	Arabidopsis thaliana	149-153
23632853-6	2013	We show that the amino-terminal region of JAZ10.4 contains a cryptic MYC2-binding site that resembles the Jas motif and that the ZIM motif of JAZ10.4 functions as a transferable repressor domain whose activity is associated with the recruitment of NINJA.	jasmonic acid	106-109	jasmonate-zim-domain protein 10	Arabidopsis thaliana	42-47
23632853-6	2013	We show that the amino-terminal region of JAZ10.4 contains a cryptic MYC2-binding site that resembles the Jas motif and that the ZIM motif of JAZ10.4 functions as a transferable repressor domain whose activity is associated with the recruitment of NINJA.	jasmonic acid	106-109	Basic helix-loop-helix (bHLH) DNA-binding family protein	Arabidopsis thaliana	69-73
23632853-8	2013	Moreover, treatment of these complemented lines with JA resulted in the rapid accumulation of JAZ10.4 protein.	jasmonic acid	53-55	jasmonate-zim-domain protein 10	Arabidopsis thaliana	94-99
23632853-9	2013	Our results provide an explanation for how the unique domain architecture of JAZ10.4 links transcription factors to a corepressor complex and suggest how JA-induced transcription and alternative splicing of JAZ10 premessenger RNA creates a regulatory circuit to attenuate JA responses.	jasmonic acid	77-79	jasmonate-zim-domain protein 10	Arabidopsis thaliana	207-212
23142764-3	2013	MYC2 coordinates JA-mediated defense responses by antagonistically regulating two different branches of the JA signaling pathway that determine resistance to pests and pathogens, respectively.	jasmonic acid	17-19	Basic helix-loop-helix (bHLH) DNA-binding family protein	Arabidopsis thaliana	0-4
23142764-3	2013	MYC2 coordinates JA-mediated defense responses by antagonistically regulating two different branches of the JA signaling pathway that determine resistance to pests and pathogens, respectively.	jasmonic acid	108-110	Basic helix-loop-helix (bHLH) DNA-binding family protein	Arabidopsis thaliana	0-4
23410518-6	2013	We show that expression of the OPR3 and DAD1 JA biosynthetic genes is enhanced in afb1-3 and tir1 afb2 afb3 flower buds, but is reduced in naphthalene acetic acid-treated flower buds, suggesting that auxin negatively regulates JA biosynthesis.	jasmonic acid	45-47	alpha/beta-Hydrolases superfamily protein	Arabidopsis thaliana	40-44
23410518-6	2013	We show that expression of the OPR3 and DAD1 JA biosynthetic genes is enhanced in afb1-3 and tir1 afb2 afb3 flower buds, but is reduced in naphthalene acetic acid-treated flower buds, suggesting that auxin negatively regulates JA biosynthesis.	jasmonic acid	45-47	GRR1-like protein 1	Arabidopsis thaliana	82-86
23142764-5	2013	Another notable function of MYC2 is the regulation of crosstalk between the signaling pathways of JA and those of other phytohormones such as abscisic acid (ABA), salicylic acid (SA), gibberellins (GAs), and auxin (IAA).	jasmonic acid	98-100	Basic helix-loop-helix (bHLH) DNA-binding family protein	Arabidopsis thaliana	28-32
23410518-6	2013	We show that expression of the OPR3 and DAD1 JA biosynthetic genes is enhanced in afb1-3 and tir1 afb2 afb3 flower buds, but is reduced in naphthalene acetic acid-treated flower buds, suggesting that auxin negatively regulates JA biosynthesis.	jasmonic acid	45-47	F-box/RNI-like superfamily protein	Arabidopsis thaliana	93-97
23410518-6	2013	We show that expression of the OPR3 and DAD1 JA biosynthetic genes is enhanced in afb1-3 and tir1 afb2 afb3 flower buds, but is reduced in naphthalene acetic acid-treated flower buds, suggesting that auxin negatively regulates JA biosynthesis.	jasmonic acid	45-47	auxin signaling F-box 2	Arabidopsis thaliana	98-102
23410518-6	2013	We show that expression of the OPR3 and DAD1 JA biosynthetic genes is enhanced in afb1-3 and tir1 afb2 afb3 flower buds, but is reduced in naphthalene acetic acid-treated flower buds, suggesting that auxin negatively regulates JA biosynthesis.	jasmonic acid	45-47	auxin signaling F-box 3	Arabidopsis thaliana	103-107
23410518-6	2013	We show that expression of the OPR3 and DAD1 JA biosynthetic genes is enhanced in afb1-3 and tir1 afb2 afb3 flower buds, but is reduced in naphthalene acetic acid-treated flower buds, suggesting that auxin negatively regulates JA biosynthesis.	jasmonic acid	227-229	oxophytodienoate-reductase 3	Arabidopsis thaliana	31-35
23410518-6	2013	We show that expression of the OPR3 and DAD1 JA biosynthetic genes is enhanced in afb1-3 and tir1 afb2 afb3 flower buds, but is reduced in naphthalene acetic acid-treated flower buds, suggesting that auxin negatively regulates JA biosynthesis.	jasmonic acid	227-229	alpha/beta-Hydrolases superfamily protein	Arabidopsis thaliana	40-44
23410518-6	2013	We show that expression of the OPR3 and DAD1 JA biosynthetic genes is enhanced in afb1-3 and tir1 afb2 afb3 flower buds, but is reduced in naphthalene acetic acid-treated flower buds, suggesting that auxin negatively regulates JA biosynthesis.	jasmonic acid	227-229	F-box/RNI-like superfamily protein	Arabidopsis thaliana	93-97
23410518-6	2013	We show that expression of the OPR3 and DAD1 JA biosynthetic genes is enhanced in afb1-3 and tir1 afb2 afb3 flower buds, but is reduced in naphthalene acetic acid-treated flower buds, suggesting that auxin negatively regulates JA biosynthesis.	jasmonic acid	227-229	auxin signaling F-box 2	Arabidopsis thaliana	98-102
23410518-6	2013	We show that expression of the OPR3 and DAD1 JA biosynthetic genes is enhanced in afb1-3 and tir1 afb2 afb3 flower buds, but is reduced in naphthalene acetic acid-treated flower buds, suggesting that auxin negatively regulates JA biosynthesis.	jasmonic acid	227-229	auxin signaling F-box 3	Arabidopsis thaliana	103-107
23410518-7	2013	The double mutant afb1 opr3 shows premature endothecium lignification, as in afb1-3, and indehiscent anthers due to lack of JA, which is required for stomium opening.	jasmonic acid	124-126	GRR1-like protein 1	Arabidopsis thaliana	18-27
23483289-0	2013	A gain-of-function mutation in IAA8 alters Arabidopsis floral organ development by change of jasmonic acid level.	jasmonic acid	93-106	indoleacetic acid-induced protein 8	Arabidopsis thaliana	31-35
23410518-7	2013	The double mutant afb1 opr3 shows premature endothecium lignification, as in afb1-3, and indehiscent anthers due to lack of JA, which is required for stomium opening.	jasmonic acid	124-126	GRR1-like protein 1	Arabidopsis thaliana	18-22
23410518-8	2013	By treating afb1 opr3 and opr3 inflorescences with JA, we show that a high JA content and precocious endothecium lignification both contribute to induction of early anther dehiscence.	jasmonic acid	51-53	GRR1-like protein 1	Arabidopsis thaliana	12-21
23483289-6	2013	This was further evidenced by analyzing the expression of jasmonic acid (JA) biosynthetic genes and JA levels because ARF6 and ARF8 are required for normal JA production.	jasmonic acid	58-71	auxin response factor 6	Arabidopsis thaliana	118-122
23483289-6	2013	This was further evidenced by analyzing the expression of jasmonic acid (JA) biosynthetic genes and JA levels because ARF6 and ARF8 are required for normal JA production.	jasmonic acid	58-71	auxin response factor 8	Arabidopsis thaliana	127-131
23410518-8	2013	By treating afb1 opr3 and opr3 inflorescences with JA, we show that a high JA content and precocious endothecium lignification both contribute to induction of early anther dehiscence.	jasmonic acid	75-77	GRR1-like protein 1	Arabidopsis thaliana	12-21
23483289-6	2013	This was further evidenced by analyzing the expression of jasmonic acid (JA) biosynthetic genes and JA levels because ARF6 and ARF8 are required for normal JA production.	jasmonic acid	73-75	auxin response factor 6	Arabidopsis thaliana	118-122
23425284-0	2013	The jasmonic acid signaling pathway is linked to auxin homeostasis through the modulation of YUCCA8 and YUCCA9 gene expression.	jasmonic acid	4-17	Flavin-binding monooxygenase family protein	Arabidopsis thaliana	93-99
23425284-0	2013	The jasmonic acid signaling pathway is linked to auxin homeostasis through the modulation of YUCCA8 and YUCCA9 gene expression.	jasmonic acid	4-17	YUCCA 9	Arabidopsis thaliana	104-110
23937049-3	2013	Within the first hour after the beginning of coleoptiles treatment with JA the increase of superoxide dismutase (SOD) activity was noted.	jasmonic acid	72-74	SOD	Triticum aestivum	91-111
23483289-6	2013	This was further evidenced by analyzing the expression of jasmonic acid (JA) biosynthetic genes and JA levels because ARF6 and ARF8 are required for normal JA production.	jasmonic acid	73-75	auxin response factor 8	Arabidopsis thaliana	127-131
23483289-6	2013	This was further evidenced by analyzing the expression of jasmonic acid (JA) biosynthetic genes and JA levels because ARF6 and ARF8 are required for normal JA production.	jasmonic acid	100-102	auxin response factor 6	Arabidopsis thaliana	118-122
23483289-6	2013	This was further evidenced by analyzing the expression of jasmonic acid (JA) biosynthetic genes and JA levels because ARF6 and ARF8 are required for normal JA production.	jasmonic acid	100-102	auxin response factor 8	Arabidopsis thaliana	127-131
23483289-6	2013	This was further evidenced by analyzing the expression of jasmonic acid (JA) biosynthetic genes and JA levels because ARF6 and ARF8 are required for normal JA production.	jasmonic acid	100-102	auxin response factor 6	Arabidopsis thaliana	118-122
23483289-6	2013	This was further evidenced by analyzing the expression of jasmonic acid (JA) biosynthetic genes and JA levels because ARF6 and ARF8 are required for normal JA production.	jasmonic acid	100-102	auxin response factor 8	Arabidopsis thaliana	127-131
23483289-7	2013	These results indicated that in IAA8::GFP-mIAA8 plants, JA biosynthetic genes including DAD1 (AT2G44810), AOS (AT5G42650) and ORP3 (AT2G06050) were dramatically down-regulated and JA level in the flowers was reduced to 70 % of that in wild-type.	jasmonic acid	56-58	indoleacetic acid-induced protein 8	Arabidopsis thaliana	32-36
23483289-7	2013	These results indicated that in IAA8::GFP-mIAA8 plants, JA biosynthetic genes including DAD1 (AT2G44810), AOS (AT5G42650) and ORP3 (AT2G06050) were dramatically down-regulated and JA level in the flowers was reduced to 70 % of that in wild-type.	jasmonic acid	56-58	alpha/beta-Hydrolases superfamily protein	Arabidopsis thaliana	88-92
23483289-7	2013	These results indicated that in IAA8::GFP-mIAA8 plants, JA biosynthetic genes including DAD1 (AT2G44810), AOS (AT5G42650) and ORP3 (AT2G06050) were dramatically down-regulated and JA level in the flowers was reduced to 70 % of that in wild-type.	jasmonic acid	180-182	indoleacetic acid-induced protein 8	Arabidopsis thaliana	32-36
23483289-8	2013	Furthermore, exogenous JA application can partially rescue short petal and stamen observed IAA8::GFP-mIAA8 plants.	jasmonic acid	23-25	indoleacetic acid-induced protein 8	Arabidopsis thaliana	91-95
23483289-9	2013	Thus, IAA8 plays its role in floral organ development by changes in JA levels probably via its interaction with ARF6/8 proteins.	jasmonic acid	68-70	indoleacetic acid-induced protein 8	Arabidopsis thaliana	6-10
23483289-9	2013	Thus, IAA8 plays its role in floral organ development by changes in JA levels probably via its interaction with ARF6/8 proteins.	jasmonic acid	68-70	auxin response factor 6	Arabidopsis thaliana	112-116
23673981-0	2013	Loss of plastoglobule kinases ABC1K1 and ABC1K3 causes conditional degreening, modified prenyl-lipids, and recruitment of the jasmonic acid pathway.	jasmonic acid	126-139	Protein kinase superfamily protein	Arabidopsis thaliana	30-36
23673981-0	2013	Loss of plastoglobule kinases ABC1K1 and ABC1K3 causes conditional degreening, modified prenyl-lipids, and recruitment of the jasmonic acid pathway.	jasmonic acid	126-139	Protein kinase superfamily protein	Arabidopsis thaliana	41-47
23673982-4	2013	Gain-of-function transgenic plants expressing the chimeric repressor for JAM1 exhibited substantial reduction of JA responses, including JA-induced inhibition of root growth, accumulation of anthocyanin, and male fertility.	jasmonic acid	113-115	ABA-inducible BHLH-type transcription factor	Arabidopsis thaliana	73-77
23937049-3	2013	Within the first hour after the beginning of coleoptiles treatment with JA the increase of superoxide dismutase (SOD) activity was noted.	jasmonic acid	72-74	SOD	Triticum aestivum	113-116
23279660-4	2013	Supporting the specialization of these LOX isoforms, LOX8 and LOX10 are localized to two distinct cellular compartments, indicating that the JA and GLV biosynthesis pathways are physically separated in maize.	jasmonic acid	141-143	linoleate 13S-lipoxygenase8	Zea mays	53-57
23673982-7	2013	JAM1 and MYC2 competitively bind to the target sequence of MYC2, which likely provides the mechanism for negative regulation of JA signaling and suppression of MYC2 functions by JAM1.	jasmonic acid	0-2	Basic helix-loop-helix (bHLH) DNA-binding family protein	Arabidopsis thaliana	59-63
23673982-7	2013	JAM1 and MYC2 competitively bind to the target sequence of MYC2, which likely provides the mechanism for negative regulation of JA signaling and suppression of MYC2 functions by JAM1.	jasmonic acid	0-2	Basic helix-loop-helix (bHLH) DNA-binding family protein	Arabidopsis thaliana	59-63
23673982-7	2013	JAM1 and MYC2 competitively bind to the target sequence of MYC2, which likely provides the mechanism for negative regulation of JA signaling and suppression of MYC2 functions by JAM1.	jasmonic acid	0-2	ABA-inducible BHLH-type transcription factor	Arabidopsis thaliana	178-182
23630530-6	2013	This phenomenon correlated with lower jasmonic acid (JA) levels and higher salicylic acid levels in the hpl1 mutant.	jasmonic acid	38-51	hydroperoxide lyase 1	Arabidopsis thaliana	104-108
23630530-6	2013	This phenomenon correlated with lower jasmonic acid (JA) levels and higher salicylic acid levels in the hpl1 mutant.	jasmonic acid	53-55	hydroperoxide lyase 1	Arabidopsis thaliana	104-108
23630530-8	2013	This suggests that the reduced growth of DC3000 in hpl1 plants is due to the constraint of JA-dependent responses.	jasmonic acid	91-93	hydroperoxide lyase 1	Arabidopsis thaliana	51-55
23347376-3	2013	The expression of DAD1 was significantly reduced in 35S:DAF RNAi/antisense plants, and complementation with 35S:DAF did not rescue the dad1 mutant, indicating that DAF acts upstream of DAD1 in jasmonic acid biosynthesis.	jasmonic acid	193-206	alpha/beta-Hydrolases superfamily protein	Arabidopsis thaliana	185-189
23347376-4	2013	This assumption is supported by the finding that 35S:DAF RNAi/antisense plants showed a similar cellular basis for anther dehiscence to that found in dad1 mutants, and that external application of jasmonic acid rescued the anther non-dehiscence and pollen defects in 35S:DAF antisense flowers.	jasmonic acid	197-210	RING/U-box superfamily protein	Arabidopsis thaliana	53-56
23347376-4	2013	This assumption is supported by the finding that 35S:DAF RNAi/antisense plants showed a similar cellular basis for anther dehiscence to that found in dad1 mutants, and that external application of jasmonic acid rescued the anther non-dehiscence and pollen defects in 35S:DAF antisense flowers.	jasmonic acid	197-210	alpha/beta-Hydrolases superfamily protein	Arabidopsis thaliana	150-154
23347376-4	2013	This assumption is supported by the finding that 35S:DAF RNAi/antisense plants showed a similar cellular basis for anther dehiscence to that found in dad1 mutants, and that external application of jasmonic acid rescued the anther non-dehiscence and pollen defects in 35S:DAF antisense flowers.	jasmonic acid	197-210	RING/U-box superfamily protein	Arabidopsis thaliana	271-274
23347376-7	2013	This result not only confirms that DAF controls anther dehiscence by positively regulating the expression of DAD1 in the jasmonic acid biosynthesis pathway, but also supports the notion that DAF functions as an E3 ubiquitin ligase, and that the conserved RING-finger region is required for its activity.	jasmonic acid	121-134	RING/U-box superfamily protein	Arabidopsis thaliana	35-38
23347376-7	2013	This result not only confirms that DAF controls anther dehiscence by positively regulating the expression of DAD1 in the jasmonic acid biosynthesis pathway, but also supports the notion that DAF functions as an E3 ubiquitin ligase, and that the conserved RING-finger region is required for its activity.	jasmonic acid	121-134	alpha/beta-Hydrolases superfamily protein	Arabidopsis thaliana	109-113
23347376-7	2013	This result not only confirms that DAF controls anther dehiscence by positively regulating the expression of DAD1 in the jasmonic acid biosynthesis pathway, but also supports the notion that DAF functions as an E3 ubiquitin ligase, and that the conserved RING-finger region is required for its activity.	jasmonic acid	121-134	RING/U-box superfamily protein	Arabidopsis thaliana	191-194
23388119-0	2013	The epiphytic fungus Pseudozyma aphidis induces jasmonic acid- and salicylic acid/nonexpressor of PR1-independent local and systemic resistance.	jasmonic acid	48-61	pathogenesis-related protein 1	Arabidopsis thaliana	98-101
23590883-8	2013	Jasmonate biosynthesis was strongly induced in ch1 mutant plants under high-light stress and was noticeably repressed under acclimation conditions, suggesting the involvement of this hormone in 1O2-induced cell death.	jasmonic acid	0-9	Pheophorbide a oxygenase family protein with Rieske 2Fe-2S domain-containing protein	Arabidopsis thaliana	47-50
23279660-9	2013	GLV-, JA- and HIPV-deficient lox10 mutants display compromised resistance to insect feeding, both under laboratory and field conditions, which is strong evidence that LOX10-dependent metabolites confer immunity against insect attack.	jasmonic acid	6-8	linoleate 13S-lipoxygenase10	Zea mays	29-34
23279660-9	2013	GLV-, JA- and HIPV-deficient lox10 mutants display compromised resistance to insect feeding, both under laboratory and field conditions, which is strong evidence that LOX10-dependent metabolites confer immunity against insect attack.	jasmonic acid	6-8	linoleate 13S-lipoxygenase10	Zea mays	167-172
23347376-3	2013	The expression of DAD1 was significantly reduced in 35S:DAF RNAi/antisense plants, and complementation with 35S:DAF did not rescue the dad1 mutant, indicating that DAF acts upstream of DAD1 in jasmonic acid biosynthesis.	jasmonic acid	193-206	alpha/beta-Hydrolases superfamily protein	Arabidopsis thaliana	18-22
23425858-0	2013	The DELLA protein RGL3 positively contributes to jasmonate/ethylene defense responses.	jasmonic acid	49-58	ral guanine nucleotide dissociation stimulator like 3	Homo sapiens	18-22
23425858-5	2013	Jasmonate (JA) rapidly induces RGL3 expression, which in turn enhances the expression of JA-responsive genes by inhibiting the activity of key repressors of JA signaling, the JAZ proteins.	jasmonic acid	0-9	ral guanine nucleotide dissociation stimulator like 3	Homo sapiens	31-35
23425858-5	2013	Jasmonate (JA) rapidly induces RGL3 expression, which in turn enhances the expression of JA-responsive genes by inhibiting the activity of key repressors of JA signaling, the JAZ proteins.	jasmonic acid	0-9	zinc finger protein 346	Homo sapiens	175-178
23425858-5	2013	Jasmonate (JA) rapidly induces RGL3 expression, which in turn enhances the expression of JA-responsive genes by inhibiting the activity of key repressors of JA signaling, the JAZ proteins.	jasmonic acid	11-13	ral guanine nucleotide dissociation stimulator like 3	Homo sapiens	31-35
23425858-5	2013	Jasmonate (JA) rapidly induces RGL3 expression, which in turn enhances the expression of JA-responsive genes by inhibiting the activity of key repressors of JA signaling, the JAZ proteins.	jasmonic acid	11-13	zinc finger protein 346	Homo sapiens	175-178
23444343-7	2013	Analysis of 13-lipoxygenase-deficient mutant lines showed that only one of the four 13-lipoxygenases, LOX6, is responsible and essential for stress-induced jasmonate accumulation in roots.	jasmonic acid	156-165	PLAT/LH2 domain-containing lipoxygenase family protein	Arabidopsis thaliana	102-106
23279660-4	2013	Supporting the specialization of these LOX isoforms, LOX8 and LOX10 are localized to two distinct cellular compartments, indicating that the JA and GLV biosynthesis pathways are physically separated in maize.	jasmonic acid	141-143	linoleate 13S-lipoxygenase10	Zea mays	62-67
23279660-5	2013	Reduced expression of JA biosynthesis genes and diminished levels of JA in lox10 mutants indicate that LOX10-derived signaling is required for LOX8-mediated JA.	jasmonic acid	22-24	linoleate 13S-lipoxygenase10	Zea mays	103-108
23279660-5	2013	Reduced expression of JA biosynthesis genes and diminished levels of JA in lox10 mutants indicate that LOX10-derived signaling is required for LOX8-mediated JA.	jasmonic acid	22-24	linoleate 13S-lipoxygenase8	Zea mays	143-147
23279660-5	2013	Reduced expression of JA biosynthesis genes and diminished levels of JA in lox10 mutants indicate that LOX10-derived signaling is required for LOX8-mediated JA.	jasmonic acid	69-71	linoleate 13S-lipoxygenase10	Zea mays	75-80
23279660-5	2013	Reduced expression of JA biosynthesis genes and diminished levels of JA in lox10 mutants indicate that LOX10-derived signaling is required for LOX8-mediated JA.	jasmonic acid	69-71	linoleate 13S-lipoxygenase10	Zea mays	103-108
23279660-5	2013	Reduced expression of JA biosynthesis genes and diminished levels of JA in lox10 mutants indicate that LOX10-derived signaling is required for LOX8-mediated JA.	jasmonic acid	69-71	linoleate 13S-lipoxygenase8	Zea mays	143-147
23279660-5	2013	Reduced expression of JA biosynthesis genes and diminished levels of JA in lox10 mutants indicate that LOX10-derived signaling is required for LOX8-mediated JA.	jasmonic acid	69-71	linoleate 13S-lipoxygenase10	Zea mays	75-80
23279660-5	2013	Reduced expression of JA biosynthesis genes and diminished levels of JA in lox10 mutants indicate that LOX10-derived signaling is required for LOX8-mediated JA.	jasmonic acid	69-71	linoleate 13S-lipoxygenase10	Zea mays	103-108
23279660-5	2013	Reduced expression of JA biosynthesis genes and diminished levels of JA in lox10 mutants indicate that LOX10-derived signaling is required for LOX8-mediated JA.	jasmonic acid	69-71	linoleate 13S-lipoxygenase8	Zea mays	143-147
23279660-6	2013	The possible role of GLVs in JA signaling is supported by their ability to partially restore wound-induced JA levels in lox10 mutants.	jasmonic acid	29-31	linoleate 13S-lipoxygenase10	Zea mays	120-125
23279660-6	2013	The possible role of GLVs in JA signaling is supported by their ability to partially restore wound-induced JA levels in lox10 mutants.	jasmonic acid	107-109	linoleate 13S-lipoxygenase10	Zea mays	120-125
23516362-4	2013	Enhancement in the expression of WRKY18 and WRKY40, which stimulate JA-signaling via suppression of JAZ repressors and negatively regulate the expression of the defense genes FMO1, PAD3 and CYP71A13, was detected in Arabidopsis roots upon Trichoderma colonization.	jasmonic acid	68-70	WRKY DNA-binding protein 18	Arabidopsis thaliana	33-39
23516362-4	2013	Enhancement in the expression of WRKY18 and WRKY40, which stimulate JA-signaling via suppression of JAZ repressors and negatively regulate the expression of the defense genes FMO1, PAD3 and CYP71A13, was detected in Arabidopsis roots upon Trichoderma colonization.	jasmonic acid	68-70	WRKY DNA-binding protein 40	Arabidopsis thaliana	44-50
23516362-4	2013	Enhancement in the expression of WRKY18 and WRKY40, which stimulate JA-signaling via suppression of JAZ repressors and negatively regulate the expression of the defense genes FMO1, PAD3 and CYP71A13, was detected in Arabidopsis roots upon Trichoderma colonization.	jasmonic acid	68-70	flavin-dependent monooxygenase 1	Arabidopsis thaliana	175-179
23439557-3	2013	Jasmonate biosynthesis mutant aos and jasmonate-insensitive mutant coi1-16 show clear resistance to root growth inhibition caused by cesium.	jasmonic acid	0-9	RNI-like superfamily protein	Arabidopsis thaliana	67-71
23439557-3	2013	Jasmonate biosynthesis mutant aos and jasmonate-insensitive mutant coi1-16 show clear resistance to root growth inhibition caused by cesium.	jasmonic acid	38-47	RNI-like superfamily protein	Arabidopsis thaliana	67-71
23516362-4	2013	Enhancement in the expression of WRKY18 and WRKY40, which stimulate JA-signaling via suppression of JAZ repressors and negatively regulate the expression of the defense genes FMO1, PAD3 and CYP71A13, was detected in Arabidopsis roots upon Trichoderma colonization.	jasmonic acid	68-70	Cytochrome P450 superfamily protein	Arabidopsis thaliana	181-185
23516362-4	2013	Enhancement in the expression of WRKY18 and WRKY40, which stimulate JA-signaling via suppression of JAZ repressors and negatively regulate the expression of the defense genes FMO1, PAD3 and CYP71A13, was detected in Arabidopsis roots upon Trichoderma colonization.	jasmonic acid	68-70	cytochrome P450 family 71 polypeptide	Arabidopsis thaliana	190-198
23314818-6	2013	Virus-induced gene silencing of ML3 expression in plants compromised in jasmonic acid (JA) and salicylic acid (SA) signalling revealed a complex role of ML3 in JA/defence signalling affecting both JA- and SA-dependent responses.	jasmonic acid	72-85	ML3	Arabidopsis thaliana	32-35
23638370-9	2013	Using isochorismate synthase (ICS)-silenced tomato plants and transcript profiles of genes in SA- and JA-related defense pathways, we show that COR suppresses SA-mediated defense during nonhost resistance.	jasmonic acid	102-104	isochorismate synthase	Solanum lycopersicum	6-28
23314818-6	2013	Virus-induced gene silencing of ML3 expression in plants compromised in jasmonic acid (JA) and salicylic acid (SA) signalling revealed a complex role of ML3 in JA/defence signalling affecting both JA- and SA-dependent responses.	jasmonic acid	87-89	ML3	Arabidopsis thaliana	32-35
23314818-6	2013	Virus-induced gene silencing of ML3 expression in plants compromised in jasmonic acid (JA) and salicylic acid (SA) signalling revealed a complex role of ML3 in JA/defence signalling affecting both JA- and SA-dependent responses.	jasmonic acid	160-162	ML3	Arabidopsis thaliana	153-156
23220733-7	2013	Exogenous JA application induced secondary wall thickening and caused flower infertility in the cbsx2 mutant, whereas it partially restored fertility in the CBSX2-overexpressing lines lacking the wall thickening.	jasmonic acid	10-12	Cystathionine beta-synthase (CBS) family protein	Arabidopsis thaliana	96-101
23435661-2	2013	Here, we demonstrate that suppression of the JA pathway by SA functions downstream of the E3 ubiquitin-ligase Skip-Cullin-F-box complex SCF(COI1), which targets JASMONATE ZIM-domain transcriptional repressor proteins (JAZs) for proteasome-mediated degradation.	jasmonic acid	45-47	KIT ligand	Homo sapiens	136-139
23435661-7	2013	Collectively, these data indicate that the SA pathway inhibits JA signaling downstream of the SCF(COI1)-JAZ complex by targeting GCC-box motifs in JA-responsive promoters via a negative effect on the transcriptional activator ORA59.	jasmonic acid	63-65	KIT ligand	Homo sapiens	94-97
23065233-6	2013	LOX activity has shown a bilateral behavior: a positive relation with membrane damage index in CA and an interesting link with double bond index (DBI) in CS indicating probably its role in secondary metabolites like jasmonic acid signaling pathway.	jasmonic acid	216-229	seed linoleate 9S-lipoxygenase	Cicer arietinum	0-3
23067202-0	2013	AtMYB44 regulates WRKY70 expression and modulates antagonistic interaction between salicylic acid and jasmonic acid signaling.	jasmonic acid	102-115	myb domain protein r1	Arabidopsis thaliana	0-7
23067202-1	2013	The role of AtMYB44, an R2R3 MYB transcription factor, in signaling mediated by jasmonic acid (JA) and salicylic acid (SA) is examined.	jasmonic acid	80-93	myb domain protein r1	Arabidopsis thaliana	12-19
23067202-1	2013	The role of AtMYB44, an R2R3 MYB transcription factor, in signaling mediated by jasmonic acid (JA) and salicylic acid (SA) is examined.	jasmonic acid	95-97	myb domain protein r1	Arabidopsis thaliana	12-19
23067202-2	2013	AtMYB44 is induced by JA through CORONATINE INSENSITIVE 1 (COI1).	jasmonic acid	22-24	myb domain protein r1	Arabidopsis thaliana	0-7
23067202-11	2013	These results demonstrate that AtMYB44 modulates antagonistic interaction by activating SA-mediated defenses and repressing JA-mediated defenses through direct control of WRKY70.	jasmonic acid	124-126	myb domain protein r1	Arabidopsis thaliana	31-38
23220733-9	2013	Our findings have revealed that CBSX2 modulates the H(2)O(2) status, which is linked to the JA response and in turn controls secondary wall thickening of the endothecial cells in anthers for dehiscence to occur.	jasmonic acid	92-94	Cystathionine beta-synthase (CBS) family protein	Arabidopsis thaliana	32-37
23299430-9	2013	Contents of abscisic acid, jasmonic acid and the ethylene precursor, 1-aminocyclopropane-1-carboxylic acid were higher in the vte1 mutant than the vte4 mutant and wild type.	jasmonic acid	27-40	tocopherol cyclase, chloroplast / vitamin E deficient 1 (VTE1) / sucrose export defective 1 (SXD1)	Arabidopsis thaliana	126-130
23171345-3	2013	All four 13-LOXs were found to contribute to jasmonate synthesis in wounded leaves: among them LOX6 showed a unique behavior.	jasmonic acid	45-54	PLAT/LH2 domain-containing lipoxygenase family protein	Arabidopsis thaliana	95-99
24088692-5	2013	The current study therefore investigated the impact of jasmonate derivatives (jasmonic acid and methyl jasmonate) and their synthetic analogues (J2 and J7) on the expression of MDC in interferon (IFN)-gamma- and tumor necrosis factor (TNF)-alpha-stimulated HaCaT human keratinocytes, as well as the attendant mechanism of action.	jasmonic acid	55-64	C-C motif chemokine ligand 22	Homo sapiens	177-180
24088692-5	2013	The current study therefore investigated the impact of jasmonate derivatives (jasmonic acid and methyl jasmonate) and their synthetic analogues (J2 and J7) on the expression of MDC in interferon (IFN)-gamma- and tumor necrosis factor (TNF)-alpha-stimulated HaCaT human keratinocytes, as well as the attendant mechanism of action.	jasmonic acid	78-91	C-C motif chemokine ligand 22	Homo sapiens	177-180
23615994-2	2013	The Arabidopsis thaliana JASMONIC ACID RESISTANT1 (JAR1) enzyme carries out this Mg-ATP-dependent reaction in two steps, adenylation of the free carboxyl of JA, followed by condensation of the activated group to Ile.	jasmonic acid	25-27	Auxin-responsive GH3 family protein	Arabidopsis thaliana	51-55
24317064-0	2013	Transcription of ST2A encoding a sulfotransferase family protein that is involved in jasmonic acid metabolism is controlled according to the circadian clock- and PIF4/PIF5-mediated external coincidence mechanism in Arabidopsis thaliana.	jasmonic acid	85-98	sulfotransferase 2A	Arabidopsis thaliana	17-21
24317064-0	2013	Transcription of ST2A encoding a sulfotransferase family protein that is involved in jasmonic acid metabolism is controlled according to the circadian clock- and PIF4/PIF5-mediated external coincidence mechanism in Arabidopsis thaliana.	jasmonic acid	85-98	phytochrome interacting factor 4	Arabidopsis thaliana	162-166
24317064-0	2013	Transcription of ST2A encoding a sulfotransferase family protein that is involved in jasmonic acid metabolism is controlled according to the circadian clock- and PIF4/PIF5-mediated external coincidence mechanism in Arabidopsis thaliana.	jasmonic acid	85-98	phytochrome interacting factor 3-like 6	Arabidopsis thaliana	167-171
24317064-7	2013	In this study, diurnal expression profile of a gene encoding a sulfotransferase family protein that is involved in the jasmonic acid metabolism, ST2A, was examined.	jasmonic acid	119-132	sulfotransferase 2A	Arabidopsis thaliana	145-149
23393583-0	2013	Identification of a novel jasmonate-responsive element in the AtJMT promoter and its binding protein for AtJMT repression.	jasmonic acid	26-35	jasmonic acid carboxyl methyltransferase	Arabidopsis thaliana	62-67
24348260-0	2013	Role of tomato lipoxygenase D in wound-induced jasmonate biosynthesis and plant immunity to insect herbivores.	jasmonic acid	47-56	linoleate 13S-lipoxygenase 3-1, chloroplastic	Solanum lycopersicum	15-29
23383073-3	2013	A key component of the JA signal transduction pathway is its receptor, the COI1 gene.	jasmonic acid	23-25	RNI-like superfamily protein	Arabidopsis thaliana	75-79
23383073-8	2013	The phenotypes of coi1-40 lead us to speculate about a modular function for COI1, since we have recovered a mutation in COI1 which has a number of JA-related phenotypes reduced while others are equal to or above wild type levels.	jasmonic acid	147-149	RNI-like superfamily protein	Arabidopsis thaliana	76-80
23383073-8	2013	The phenotypes of coi1-40 lead us to speculate about a modular function for COI1, since we have recovered a mutation in COI1 which has a number of JA-related phenotypes reduced while others are equal to or above wild type levels.	jasmonic acid	147-149	RNI-like superfamily protein	Arabidopsis thaliana	120-124
23573263-1	2013	In a screen for delayed floral organ abscission in Arabidopsis, we have identified a novel mutant of CORONATINE INSENSITIVE 1 (COI1), the F-box protein that has been shown to be the jasmonic acid (JA) co-receptor.	jasmonic acid	182-195	RNI-like superfamily protein	Arabidopsis thaliana	101-125
23573263-1	2013	In a screen for delayed floral organ abscission in Arabidopsis, we have identified a novel mutant of CORONATINE INSENSITIVE 1 (COI1), the F-box protein that has been shown to be the jasmonic acid (JA) co-receptor.	jasmonic acid	182-195	RNI-like superfamily protein	Arabidopsis thaliana	127-131
23573263-1	2013	In a screen for delayed floral organ abscission in Arabidopsis, we have identified a novel mutant of CORONATINE INSENSITIVE 1 (COI1), the F-box protein that has been shown to be the jasmonic acid (JA) co-receptor.	jasmonic acid	197-199	RNI-like superfamily protein	Arabidopsis thaliana	101-125
23573263-1	2013	In a screen for delayed floral organ abscission in Arabidopsis, we have identified a novel mutant of CORONATINE INSENSITIVE 1 (COI1), the F-box protein that has been shown to be the jasmonic acid (JA) co-receptor.	jasmonic acid	197-199	RNI-like superfamily protein	Arabidopsis thaliana	127-131
23573263-7	2013	Further characterizations of ethylene and JA responses of dab4-1/coi1-37 also provide new information suggesting separate pathways for ethylene and JA that control both floral organ abscission and hypocotyl growth in young seedlings.	jasmonic acid	42-44	RNI-like superfamily protein	Arabidopsis thaliana	65-69
23573263-7	2013	Further characterizations of ethylene and JA responses of dab4-1/coi1-37 also provide new information suggesting separate pathways for ethylene and JA that control both floral organ abscission and hypocotyl growth in young seedlings.	jasmonic acid	148-150	RNI-like superfamily protein	Arabidopsis thaliana	65-69
23320078-1	2013	CORONATINE INSENSITIVE 1 (COI1) encodes an E3 ubiquitin ligase complex component that interacts with JAZ proteins and targets them for degradation in response to JA signaling.	jasmonic acid	101-103	RNI-like superfamily protein	Arabidopsis thaliana	26-30
23393583-0	2013	Identification of a novel jasmonate-responsive element in the AtJMT promoter and its binding protein for AtJMT repression.	jasmonic acid	26-35	jasmonic acid carboxyl methyltransferase	Arabidopsis thaliana	105-110
23393583-4	2013	To understand its regulatory mechanism, here we define a novel JA-responsive cis-element (JARE), G(C)TCCTGA, in the AtJMT and BcNTR1 promoters, by promoter deletion analysis and Yeast 1-Hybrid (Y1H) assays; the JARE is distinct from other JA-responsive cis-elements previously reported.	jasmonic acid	63-65	jasmonic acid carboxyl methyltransferase	Arabidopsis thaliana	116-121
23393583-7	2013	However, AtBBD1 positively regulated the JA-responsive expression of JR2.	jasmonic acid	41-43	bifunctional nuclease in basal defense response 1	Arabidopsis thaliana	9-15
23169619-5	2012	In this study, we conducted mutational analysis of the C termini (containing the conserved Jas motif) of two JAZ repressors, JAZ1 and JAZ9.	jasmonic acid	91-94	zinc finger protein 346	Homo sapiens	109-112
23037505-7	2012	In line with these data, we found that aba1-6 resistance to P. cucumerina was partially compromised when the SA, JA, or ET pathway was disrupted in this mutant.	jasmonic acid	113-115	zeaxanthin epoxidase (ZEP) (ABA1)	Arabidopsis thaliana	39-45
23064320-7	2012	In addition, mutations in MED16 blocked the induction of several jasmonic acid (JA)/ethylene (ET)-responsive genes and compromised resistance to the necrotrophic fungal pathogens Botrytis cinerea and Alternaria brassicicola.	jasmonic acid	65-78	sensitive to freezing 6	Arabidopsis thaliana	26-31
23124383-5	2012	nNOS transgenic plants contained high levels of salicylic acid (SA), and they induced an array of SA-, jasmonic acid (JA)-, and/or ethylene (ET)-related genes.	jasmonic acid	103-116	nitric oxide synthase 1	Homo sapiens	0-4
23124383-5	2012	nNOS transgenic plants contained high levels of salicylic acid (SA), and they induced an array of SA-, jasmonic acid (JA)-, and/or ethylene (ET)-related genes.	jasmonic acid	118-120	nitric oxide synthase 1	Homo sapiens	0-4
23011567-5	2012	The current model of JA perception and signaling implies the SCF(COI1) complex operating as E3 ubiquitin ligase that upon binding of JA-Ile targets JAZ proteins for degradation by the 26S proteasome pathway, thereby allowing MYC2 and other transcription factors to activate gene expression.	jasmonic acid	21-23	KIT ligand	Homo sapiens	61-64
23064320-7	2012	In addition, mutations in MED16 blocked the induction of several jasmonic acid (JA)/ethylene (ET)-responsive genes and compromised resistance to the necrotrophic fungal pathogens Botrytis cinerea and Alternaria brassicicola.	jasmonic acid	80-82	sensitive to freezing 6	Arabidopsis thaliana	26-31
22658222-4	2012	It was observed that the coi1-1 mutant was less sensitive to JA on pericycle cell activation to induce lateral root primordia (LRP) formation and presented alterations in lateral root positioning and lateral root emergence on bends.	jasmonic acid	61-63	RNI-like superfamily protein	Arabidopsis thaliana	25-31
22898498-0	2012	Two novel RING-type ubiquitin ligases, RGLG3 and RGLG4, are essential for jasmonate-mediated responses in Arabidopsis.	jasmonic acid	74-83	Copine (Calcium-dependent phospholipid-binding protein) family	Arabidopsis thaliana	39-44
22898498-0	2012	Two novel RING-type ubiquitin ligases, RGLG3 and RGLG4, are essential for jasmonate-mediated responses in Arabidopsis.	jasmonic acid	74-83	Ca(2)-dependent phospholipid-binding protein (Copine) family	Arabidopsis thaliana	49-54
22898498-4	2012	Altered expression of RGLG3 and RGLG4 affected methyl JA-inhibited root growth and JA-inductive gene expression, which could be suppressed by the coronatine insensitive1 (coi1) mutant.	jasmonic acid	54-56	Copine (Calcium-dependent phospholipid-binding protein) family	Arabidopsis thaliana	22-27
22898498-4	2012	Altered expression of RGLG3 and RGLG4 affected methyl JA-inhibited root growth and JA-inductive gene expression, which could be suppressed by the coronatine insensitive1 (coi1) mutant.	jasmonic acid	54-56	Ca(2)-dependent phospholipid-binding protein (Copine) family	Arabidopsis thaliana	32-37
22898498-5	2012	rglg3 rglg4 also attenuated the inhibitory effect of JA-isoleucine-mimicking coronatine on root elongation, and consistently, rglg3 rglg4 was resistant to the coronatine-secreting pathogen Pseudomonas syringae pv tomato DC3000, suggesting that RGLG3 and RGLG4 acted in response to the coronatine and promoted JA-mediated pathogen susceptibility.	jasmonic acid	53-55	Copine (Calcium-dependent phospholipid-binding protein) family	Arabidopsis thaliana	0-5
22898498-5	2012	rglg3 rglg4 also attenuated the inhibitory effect of JA-isoleucine-mimicking coronatine on root elongation, and consistently, rglg3 rglg4 was resistant to the coronatine-secreting pathogen Pseudomonas syringae pv tomato DC3000, suggesting that RGLG3 and RGLG4 acted in response to the coronatine and promoted JA-mediated pathogen susceptibility.	jasmonic acid	53-55	Ca(2)-dependent phospholipid-binding protein (Copine) family	Arabidopsis thaliana	6-11
22898498-6	2012	In addition, rglg3 rglg4 repressed wound-stunted plant growth, wound-stimulated expression of JA-responsive genes, and wound-induced JA biosynthesis, indicating their roles in JA-dependent wound response.	jasmonic acid	94-96	Copine (Calcium-dependent phospholipid-binding protein) family	Arabidopsis thaliana	13-18
22898498-6	2012	In addition, rglg3 rglg4 repressed wound-stunted plant growth, wound-stimulated expression of JA-responsive genes, and wound-induced JA biosynthesis, indicating their roles in JA-dependent wound response.	jasmonic acid	94-96	Ca(2)-dependent phospholipid-binding protein (Copine) family	Arabidopsis thaliana	19-24
22898498-6	2012	In addition, rglg3 rglg4 repressed wound-stunted plant growth, wound-stimulated expression of JA-responsive genes, and wound-induced JA biosynthesis, indicating their roles in JA-dependent wound response.	jasmonic acid	133-135	Copine (Calcium-dependent phospholipid-binding protein) family	Arabidopsis thaliana	13-18
22898498-6	2012	In addition, rglg3 rglg4 repressed wound-stunted plant growth, wound-stimulated expression of JA-responsive genes, and wound-induced JA biosynthesis, indicating their roles in JA-dependent wound response.	jasmonic acid	133-135	Ca(2)-dependent phospholipid-binding protein (Copine) family	Arabidopsis thaliana	19-24
22898498-8	2012	Taken together, these results indicate that the ubiquitin ligases RGLG3 and RGLG4 are essential upstream modulators of JA signaling in response to various stimuli.	jasmonic acid	119-121	Copine (Calcium-dependent phospholipid-binding protein) family	Arabidopsis thaliana	66-71
22898498-8	2012	Taken together, these results indicate that the ubiquitin ligases RGLG3 and RGLG4 are essential upstream modulators of JA signaling in response to various stimuli.	jasmonic acid	119-121	Ca(2)-dependent phospholipid-binding protein (Copine) family	Arabidopsis thaliana	76-81
22895103-2	2012	(+)-7-iso-jasmonoyl isoleucine, the bioactive JA, is involved in most JA-dependent processes mediated by the F-box protein COI1 in a proteasome-dependent manner.	jasmonic acid	46-48	coronatine-insensitive 1	Solanum lycopersicum	123-127
22895103-2	2012	(+)-7-iso-jasmonoyl isoleucine, the bioactive JA, is involved in most JA-dependent processes mediated by the F-box protein COI1 in a proteasome-dependent manner.	jasmonic acid	70-72	coronatine-insensitive 1	Solanum lycopersicum	123-127
22895103-3	2012	However, there is an increasing number of examples, where the precursor of JA biosynthesis, cis-(+)-12-oxophytodienoic acid (OPDA) is active in a JA/COI1-independent manner.	jasmonic acid	75-77	coronatine-insensitive 1	Solanum lycopersicum	149-153
22895103-3	2012	However, there is an increasing number of examples, where the precursor of JA biosynthesis, cis-(+)-12-oxophytodienoic acid (OPDA) is active in a JA/COI1-independent manner.	jasmonic acid	146-148	coronatine-insensitive 1	Solanum lycopersicum	149-153
23009548-6	2012	We observed that MYC2 negatively regulates the accumulation of JA-dependent indolic glucosinolate-related proteins and exhibits opposite effects on the biosynthetic enzymes involved aliphatic glucosinolate pathways.	jasmonic acid	63-65	Basic helix-loop-helix (bHLH) DNA-binding family protein	Arabidopsis thaliana	17-21
23009548-8	2012	These results support a positive role for MYC2 in regulating JA-mediated carbohydrate metabolism and oxidative stress tolerance.	jasmonic acid	61-63	Basic helix-loop-helix (bHLH) DNA-binding family protein	Arabidopsis thaliana	42-46
23009548-10	2012	The observed pattern of protein expression suggests that MYC2 has opposite effects on the biosynthetic enzymes of indolic and aliphatic glucosinolate pathways and positively regulates JA-mediated carbohydrate metabolism and oxidative stress tolerance-related proteins.	jasmonic acid	184-186	Basic helix-loop-helix (bHLH) DNA-binding family protein	Arabidopsis thaliana	57-61
23009548-12	2012	This study will enhance our understanding of the function of MYC2 in JA signaling in Arabidopsis thaliana.	jasmonic acid	69-71	Basic helix-loop-helix (bHLH) DNA-binding family protein	Arabidopsis thaliana	61-65
22494141-0	2012	The Mediator subunit SFR6/MED16 controls defence gene expression mediated by salicylic acid and jasmonate responsive pathways.	jasmonic acid	96-105	sensitive to freezing 6	Arabidopsis thaliana	21-25
22892320-4	2012	This study reveals that DELLA RGA-LIKE3 (RGL3) protein is essential to fully enhance the jasmonate (JA)-mediated responses.	jasmonic acid	100-102	RGA-like protein 3	Arabidopsis thaliana	30-39
22892320-4	2012	This study reveals that DELLA RGA-LIKE3 (RGL3) protein is essential to fully enhance the jasmonate (JA)-mediated responses.	jasmonic acid	100-102	RGA-like protein 3	Arabidopsis thaliana	41-45
22892320-5	2012	We show that JA rapidly induces RGL3 expression in a CORONATINE INSENSITIVE1 (COI1)- and JASMONATE INSENSITIVE1 (JIN1/MYC2)-dependent manner.	jasmonic acid	13-15	RGA-like protein 3	Arabidopsis thaliana	32-36
22892320-5	2012	We show that JA rapidly induces RGL3 expression in a CORONATINE INSENSITIVE1 (COI1)- and JASMONATE INSENSITIVE1 (JIN1/MYC2)-dependent manner.	jasmonic acid	13-15	RNI-like superfamily protein	Arabidopsis thaliana	78-82
22892320-5	2012	We show that JA rapidly induces RGL3 expression in a CORONATINE INSENSITIVE1 (COI1)- and JASMONATE INSENSITIVE1 (JIN1/MYC2)-dependent manner.	jasmonic acid	13-15	Basic helix-loop-helix (bHLH) DNA-binding family protein	Arabidopsis thaliana	113-117
22892320-5	2012	We show that JA rapidly induces RGL3 expression in a CORONATINE INSENSITIVE1 (COI1)- and JASMONATE INSENSITIVE1 (JIN1/MYC2)-dependent manner.	jasmonic acid	13-15	Basic helix-loop-helix (bHLH) DNA-binding family protein	Arabidopsis thaliana	118-122
22892320-8	2012	These findings suggest that JA/MYC2-dependent accumulation of RGL3 represses JAZ activity, which in turn enhances the expression of JA-responsive genes.	jasmonic acid	28-30	Basic helix-loop-helix (bHLH) DNA-binding family protein	Arabidopsis thaliana	31-35
22892320-8	2012	These findings suggest that JA/MYC2-dependent accumulation of RGL3 represses JAZ activity, which in turn enhances the expression of JA-responsive genes.	jasmonic acid	28-30	RGA-like protein 3	Arabidopsis thaliana	62-66
22892320-9	2012	Accordingly, we show that induction of primary JA-responsive genes is reduced in the rgl3-5 mutant and enhanced in transgenic lines overexpressing RGL3.	jasmonic acid	47-49	RGA-like protein 3	Arabidopsis thaliana	85-89
22892320-9	2012	Accordingly, we show that induction of primary JA-responsive genes is reduced in the rgl3-5 mutant and enhanced in transgenic lines overexpressing RGL3.	jasmonic acid	47-49	RGA-like protein 3	Arabidopsis thaliana	147-151
22892320-10	2012	Hence, RGL3 positively regulates JA-mediated resistance to the necrotroph Botrytis cinerea and susceptibility to the hemibiotroph Pseudomonas syringae.	jasmonic acid	33-35	RGA-like protein 3	Arabidopsis thaliana	7-11
22892320-11	2012	We propose that JA-mediated induction of RGL3 expression is of adaptive significance and might represent a recent functional diversification of the DELLAs.	jasmonic acid	16-18	RGA-like protein 3	Arabidopsis thaliana	41-45
22570470-4	2012	Functional analysis of cml42 plants revealed more resistance to herbivory than in the wild type, because caterpillars gain less weight on the mutant, indicating that CML42 negatively regulates plant defense; cml42 also showed increased aliphatic glucosinolate content and hyperactivated transcript accumulation of the jasmonic acid (JA)-responsive genes VSP2 and Thi2.1 upon herbivory, which might contribute to increased resistance.	jasmonic acid	318-331	calmodulin like 42	Arabidopsis thaliana	166-171
22570470-4	2012	Functional analysis of cml42 plants revealed more resistance to herbivory than in the wild type, because caterpillars gain less weight on the mutant, indicating that CML42 negatively regulates plant defense; cml42 also showed increased aliphatic glucosinolate content and hyperactivated transcript accumulation of the jasmonic acid (JA)-responsive genes VSP2 and Thi2.1 upon herbivory, which might contribute to increased resistance.	jasmonic acid	333-335	calmodulin like 42	Arabidopsis thaliana	166-171
22570470-7	2012	JA-induced Ca2+ elevation and root growth inhibition were more sensitive in cml42, also indicating higher JA perception.	jasmonic acid	0-2	calmodulin like 42	Arabidopsis thaliana	76-81
22570470-7	2012	JA-induced Ca2+ elevation and root growth inhibition were more sensitive in cml42, also indicating higher JA perception.	jasmonic acid	106-108	calmodulin like 42	Arabidopsis thaliana	76-81
22570470-8	2012	Our results indicate that CML42 acts as a crucial signaling component connecting Ca2+ and JA signaling.	jasmonic acid	90-92	calmodulin like 42	Arabidopsis thaliana	26-31
22822206-3	2012	Here, we report the action mechanisms of the MEDIATOR25 (MED25) subunit of the Arabidopsis thaliana Mediator in regulating jasmonate- and abscisic acid (ABA)-triggered gene transcription.	jasmonic acid	123-132	phytochrome and flowering time regulatory protein (PFT1)	Arabidopsis thaliana	45-55
22822206-3	2012	Here, we report the action mechanisms of the MEDIATOR25 (MED25) subunit of the Arabidopsis thaliana Mediator in regulating jasmonate- and abscisic acid (ABA)-triggered gene transcription.	jasmonic acid	123-132	phytochrome and flowering time regulatory protein (PFT1)	Arabidopsis thaliana	57-62
22786889-6	2012	However, PLANT DEFENSIN1.2 expression was unaltered, indicating a repressor role for LBD20 in a branch of the JA-signaling pathway.	jasmonic acid	110-112	LOB domain-containing protein 20	Arabidopsis thaliana	85-90
22786889-10	2012	Taken together, LBD20 is a F. oxysporum susceptibility gene that appears to regulate components of JA signaling downstream of COI1 and MYC2 that are required for full elicitation of F. oxysporum- and JA-dependent responses.	jasmonic acid	99-101	LOB domain-containing protein 20	Arabidopsis thaliana	16-21
22786889-10	2012	Taken together, LBD20 is a F. oxysporum susceptibility gene that appears to regulate components of JA signaling downstream of COI1 and MYC2 that are required for full elicitation of F. oxysporum- and JA-dependent responses.	jasmonic acid	200-202	LOB domain-containing protein 20	Arabidopsis thaliana	16-21
22641422-7	2012	Similarly, JA and Et levels were increased in glb1 but decreased in 35S-GLB1 in response to attack by B. cinerea.	jasmonic acid	11-13	nitrogen regulatory P-II-like protein	Arabidopsis thaliana	46-50
22641422-7	2012	Similarly, JA and Et levels were increased in glb1 but decreased in 35S-GLB1 in response to attack by B. cinerea.	jasmonic acid	11-13	nitrogen regulatory P-II-like protein	Arabidopsis thaliana	72-76
22207719-4	2012	In contrast, ectopically expressed ROXY19/GRX480 negatively regulates expression of jasmonic acid (JA)/ethylene (ET)-induced defense genes through an unknown mechanism that requires clade II transcription factors TGA2, TGA5, and/or TGA6.	jasmonic acid	84-97	Thioredoxin superfamily protein	Arabidopsis thaliana	35-41
22207719-4	2012	In contrast, ectopically expressed ROXY19/GRX480 negatively regulates expression of jasmonic acid (JA)/ethylene (ET)-induced defense genes through an unknown mechanism that requires clade II transcription factors TGA2, TGA5, and/or TGA6.	jasmonic acid	84-97	Thioredoxin superfamily protein	Arabidopsis thaliana	42-48
22207719-4	2012	In contrast, ectopically expressed ROXY19/GRX480 negatively regulates expression of jasmonic acid (JA)/ethylene (ET)-induced defense genes through an unknown mechanism that requires clade II transcription factors TGA2, TGA5, and/or TGA6.	jasmonic acid	84-97	bZIP transcription factor family protein	Arabidopsis thaliana	213-217
22207719-4	2012	In contrast, ectopically expressed ROXY19/GRX480 negatively regulates expression of jasmonic acid (JA)/ethylene (ET)-induced defense genes through an unknown mechanism that requires clade II transcription factors TGA2, TGA5, and/or TGA6.	jasmonic acid	84-97	OCS-element binding factor 5	Arabidopsis thaliana	219-223
22207719-4	2012	In contrast, ectopically expressed ROXY19/GRX480 negatively regulates expression of jasmonic acid (JA)/ethylene (ET)-induced defense genes through an unknown mechanism that requires clade II transcription factors TGA2, TGA5, and/or TGA6.	jasmonic acid	84-97	TGACG motif-binding factor 6	Arabidopsis thaliana	232-236
22207719-4	2012	In contrast, ectopically expressed ROXY19/GRX480 negatively regulates expression of jasmonic acid (JA)/ethylene (ET)-induced defense genes through an unknown mechanism that requires clade II transcription factors TGA2, TGA5, and/or TGA6.	jasmonic acid	99-101	Thioredoxin superfamily protein	Arabidopsis thaliana	35-41
22207719-4	2012	In contrast, ectopically expressed ROXY19/GRX480 negatively regulates expression of jasmonic acid (JA)/ethylene (ET)-induced defense genes through an unknown mechanism that requires clade II transcription factors TGA2, TGA5, and/or TGA6.	jasmonic acid	99-101	Thioredoxin superfamily protein	Arabidopsis thaliana	42-48
22207719-4	2012	In contrast, ectopically expressed ROXY19/GRX480 negatively regulates expression of jasmonic acid (JA)/ethylene (ET)-induced defense genes through an unknown mechanism that requires clade II transcription factors TGA2, TGA5, and/or TGA6.	jasmonic acid	99-101	bZIP transcription factor family protein	Arabidopsis thaliana	213-217
22207719-4	2012	In contrast, ectopically expressed ROXY19/GRX480 negatively regulates expression of jasmonic acid (JA)/ethylene (ET)-induced defense genes through an unknown mechanism that requires clade II transcription factors TGA2, TGA5, and/or TGA6.	jasmonic acid	99-101	OCS-element binding factor 5	Arabidopsis thaliana	219-223
22207719-4	2012	In contrast, ectopically expressed ROXY19/GRX480 negatively regulates expression of jasmonic acid (JA)/ethylene (ET)-induced defense genes through an unknown mechanism that requires clade II transcription factors TGA2, TGA5, and/or TGA6.	jasmonic acid	99-101	TGACG motif-binding factor 6	Arabidopsis thaliana	232-236
22635114-0	2012	The vascular pathogen Verticillium longisporum requires a jasmonic acid-independent COI1 function in roots to elicit disease symptoms in Arabidopsis shoots.	jasmonic acid	58-71	RNI-like superfamily protein	Arabidopsis thaliana	84-88
22635114-2	2012	Here, we report that these disease symptoms are less pronounced in plants that lack the receptor of the plant defense hormone jasmonic acid (JA), CORONATINE INSENSITIVE1 (COI1).	jasmonic acid	126-139	RNI-like superfamily protein	Arabidopsis thaliana	146-169
22635114-2	2012	Here, we report that these disease symptoms are less pronounced in plants that lack the receptor of the plant defense hormone jasmonic acid (JA), CORONATINE INSENSITIVE1 (COI1).	jasmonic acid	126-139	RNI-like superfamily protein	Arabidopsis thaliana	171-175
22635114-6	2012	Marker genes of the JA and the JA/ethylene defense pathway were induced in petioles of wild-type plants but not in petioles of dde2 plants, indicating that fungal compounds that would activate the known COI1-dependent signal transduction chain were absent.	jasmonic acid	20-22	RNI-like superfamily protein	Arabidopsis thaliana	203-207
22669881-8	2012	MYC2 has been proposed as a major mediator of JA signaling and crosstalk with abscisic acid, ethylene, and light signaling pathways.	jasmonic acid	46-48	Basic helix-loop-helix (bHLH) DNA-binding family protein	Arabidopsis thaliana	0-4
22805209-3	2012	AP2/ERF transcription factor are involved in salicylic acid, jasmonic acid, ethylene, abscisic acid signal transduction pathways and among them.	jasmonic acid	61-74	transcription factor AP-2 alpha	Homo sapiens	0-3
22805209-3	2012	AP2/ERF transcription factor are involved in salicylic acid, jasmonic acid, ethylene, abscisic acid signal transduction pathways and among them.	jasmonic acid	61-74	ETS2 repressor factor	Homo sapiens	4-7
22669881-3	2012	Expression of TPS21 and TPS11 can be induced by the phytohormones gibberellin (GA) and jasmonate (JA), and both inductions require MYC2.	jasmonic acid	87-96	terpene synthase 21	Arabidopsis thaliana	14-19
22628555-2	2012	Here, we report the crystal structures of benzoate-specific Arabidopsis thaliana AtGH3.12/PBS3 and jasmonic acid-specific AtGH3.11/JAR1.	jasmonic acid	99-112	Auxin-responsive GH3 family protein	Arabidopsis thaliana	131-135
22442424-8	2012	Jasmonic acid elicited a coordinated response of the three genes and auxin induced both hGSHS expression and activity.	jasmonic acid	0-13	glutathione synthetase	Homo sapiens	88-93
22392279-4	2012	Subsequent detailed kinetic analyses revealed that loss of WRKY33 function results in inappropriate activation of the salicylic acid (SA)-related host response and elevated SA levels post infection and in the down-regulation of jasmonic acid (JA)-associated responses at later stages.	jasmonic acid	228-241	WRKY DNA-binding protein 33	Arabidopsis thaliana	59-65
22669881-3	2012	Expression of TPS21 and TPS11 can be induced by the phytohormones gibberellin (GA) and jasmonate (JA), and both inductions require MYC2.	jasmonic acid	87-96	trehalose phosphatase/synthase 11	Arabidopsis thaliana	24-29
22529386-9	2012	Importantly, the pif quadruple (pifq) mutant no longer responds to JA-induced growth inhibition, and overexpression of PIF3 could partially overcome JA-induced growth inhibition.	jasmonic acid	149-151	phytochrome interacting factor 3	Arabidopsis thaliana	119-123
22529386-10	2012	Thus, a molecular cascade involving the COI1-JAZ-DELLA-PIF signaling module, by which angiosperm plants prioritize JA-mediated defense over growth, has been elucidated.	jasmonic acid	45-47	RNI-like superfamily protein	Arabidopsis thaliana	40-44
22371088-10	2012	These results revealed that Ca(2+)/CaM-mediated signaling regulates plant response to herbivore attack/wounding by modulating the SA-JA crosstalk through AtSR1.	jasmonic acid	133-135	calmodulin 3	Homo sapiens	35-38
22371088-10	2012	These results revealed that Ca(2+)/CaM-mediated signaling regulates plant response to herbivore attack/wounding by modulating the SA-JA crosstalk through AtSR1.	jasmonic acid	133-135	signal responsive 1	Arabidopsis thaliana	154-159
22392279-4	2012	Subsequent detailed kinetic analyses revealed that loss of WRKY33 function results in inappropriate activation of the salicylic acid (SA)-related host response and elevated SA levels post infection and in the down-regulation of jasmonic acid (JA)-associated responses at later stages.	jasmonic acid	243-245	WRKY DNA-binding protein 33	Arabidopsis thaliana	59-65
22392279-6	2012	Moreover, genes involved in redox homeostasis, SA signaling, ethylene-JA-mediated cross-communication, and camalexin biosynthesis were identified as direct targets of WRKY33.	jasmonic acid	70-72	WRKY DNA-binding protein 33	Arabidopsis thaliana	167-173
22392279-7	2012	Genetic studies indicate that although SA-mediated repression of the JA pathway may contribute to the susceptibility of wrky33 plants to B. cinerea, it is insufficient for WRKY33-mediated resistance.	jasmonic acid	69-71	WRKY DNA-binding protein 33	Arabidopsis thaliana	120-126
22291202-8	2012	Although loss of function of FAD7 also inhibits the synthesis of jasmonate (JA), the effects of this desaturase on aphid resistance are not dependent on JA; other mutants impaired in JA synthesis (acx1) or perception (jai1-1) show wild-type levels of aphid susceptibility, and spr2 retains aphid resistance when treated with methyl jasmonate.	jasmonic acid	65-74	omega-3 fatty acid desaturase	Solanum lycopersicum	29-33
21679158-5	2012	Semi-quantitative RT-PCR (reverse transcription-PCR) showed that GhRDR6 was up-regulated by the application of various phytohormones, including MeJA [methyl JA (jasmonate)], ABA (abscisic acid), JA, alpha-naphthylacetic acid, gibberellins and ET (ethylene).	jasmonic acid	146-148	RNA-dependent RNA polymerase 6-like	Gossypium hirsutum	65-71
22006107-4	2012	Northern-blot analysis indicated that ZmMPK17 transcription is involved in response to exogenous signaling molecules such as abscisic acid, hydrogen peroxide, salicylic acid, jasmonic acid and ethylene and induced by low temperature and osmotic stress.	jasmonic acid	175-188	Mitogen-activated protein kinase 13	Zea mays	38-45
22452854-0	2012	Xenobiotic- and jasmonic acid-inducible signal transduction pathways have become interdependent at the Arabidopsis CYP81D11 promoter.	jasmonic acid	16-29	Cytochrome P450 superfamily protein	Arabidopsis thaliana	115-123
22452854-3	2012	CYP81D11 expression is also induced by the phytohormone jasmonic acid (JA) through the established pathway requiring the JA receptor CORONATINE INSENSITIVE1 (COI1) and the JA-regulated transcription factor MYC2.	jasmonic acid	56-69	Cytochrome P450 superfamily protein	Arabidopsis thaliana	0-8
22452854-3	2012	CYP81D11 expression is also induced by the phytohormone jasmonic acid (JA) through the established pathway requiring the JA receptor CORONATINE INSENSITIVE1 (COI1) and the JA-regulated transcription factor MYC2.	jasmonic acid	56-69	RNI-like superfamily protein	Arabidopsis thaliana	158-162
22452854-3	2012	CYP81D11 expression is also induced by the phytohormone jasmonic acid (JA) through the established pathway requiring the JA receptor CORONATINE INSENSITIVE1 (COI1) and the JA-regulated transcription factor MYC2.	jasmonic acid	56-69	Basic helix-loop-helix (bHLH) DNA-binding family protein	Arabidopsis thaliana	206-210
22452854-3	2012	CYP81D11 expression is also induced by the phytohormone jasmonic acid (JA) through the established pathway requiring the JA receptor CORONATINE INSENSITIVE1 (COI1) and the JA-regulated transcription factor MYC2.	jasmonic acid	71-73	Cytochrome P450 superfamily protein	Arabidopsis thaliana	0-8
22452854-3	2012	CYP81D11 expression is also induced by the phytohormone jasmonic acid (JA) through the established pathway requiring the JA receptor CORONATINE INSENSITIVE1 (COI1) and the JA-regulated transcription factor MYC2.	jasmonic acid	71-73	RNI-like superfamily protein	Arabidopsis thaliana	158-162
22452854-3	2012	CYP81D11 expression is also induced by the phytohormone jasmonic acid (JA) through the established pathway requiring the JA receptor CORONATINE INSENSITIVE1 (COI1) and the JA-regulated transcription factor MYC2.	jasmonic acid	71-73	Basic helix-loop-helix (bHLH) DNA-binding family protein	Arabidopsis thaliana	206-210
22452854-4	2012	Here, we report that the xenobiotic- and the JA-dependent signal cascades have become interdependent at the CYP81D11 promoter.	jasmonic acid	45-47	Cytochrome P450 superfamily protein	Arabidopsis thaliana	108-116
22452854-8	2012	Remarkably, stress-induced expression levels were 3-fold lower in coi1 than in the JA biosynthesis mutant dde2-2, [corrected] revealing that COI1 can contribute to the activation of the promoter in the absence of JA.	jasmonic acid	83-85	RNI-like superfamily protein	Arabidopsis thaliana	141-145
22337921-3	2012	The diminished seed formation in jai1 together with the ovule-specific accumulation of the JA biosynthesis enzyme allene oxide cyclase (AOC), which correlates with elevated levels of JAs, suggest a role of oxylipins in tomato flower/seed development.	jasmonic acid	91-93	allene oxide cyclase	Solanum lycopersicum	136-139
22337921-3	2012	The diminished seed formation in jai1 together with the ovule-specific accumulation of the JA biosynthesis enzyme allene oxide cyclase (AOC), which correlates with elevated levels of JAs, suggest a role of oxylipins in tomato flower/seed development.	jasmonic acid	183-186	allene oxide cyclase	Solanum lycopersicum	136-139
22523204-0	2012	Disruption of OPR7 and OPR8 reveals the versatile functions of jasmonic acid in maize development and defense.	jasmonic acid	63-76	12-oxophytodienoate reductase7	Zea mays	14-18
22523204-0	2012	Disruption of OPR7 and OPR8 reveals the versatile functions of jasmonic acid in maize development and defense.	jasmonic acid	63-76	12-oxophytodienoate reductase8	Zea mays	23-27
22523204-1	2012	Here, multiple functions of jasmonic acid (JA) in maize (Zea mays) are revealed by comprehensive analyses of JA-deficient mutants of the two oxo-phytodienoate reductase genes, OPR7 and OPR8.	jasmonic acid	28-41	12-oxophytodienoate reductase7	Zea mays	176-180
22523204-1	2012	Here, multiple functions of jasmonic acid (JA) in maize (Zea mays) are revealed by comprehensive analyses of JA-deficient mutants of the two oxo-phytodienoate reductase genes, OPR7 and OPR8.	jasmonic acid	28-41	12-oxophytodienoate reductase8	Zea mays	185-189
22523204-1	2012	Here, multiple functions of jasmonic acid (JA) in maize (Zea mays) are revealed by comprehensive analyses of JA-deficient mutants of the two oxo-phytodienoate reductase genes, OPR7 and OPR8.	jasmonic acid	43-45	12-oxophytodienoate reductase7	Zea mays	176-180
22523204-1	2012	Here, multiple functions of jasmonic acid (JA) in maize (Zea mays) are revealed by comprehensive analyses of JA-deficient mutants of the two oxo-phytodienoate reductase genes, OPR7 and OPR8.	jasmonic acid	43-45	12-oxophytodienoate reductase8	Zea mays	185-189
22523204-1	2012	Here, multiple functions of jasmonic acid (JA) in maize (Zea mays) are revealed by comprehensive analyses of JA-deficient mutants of the two oxo-phytodienoate reductase genes, OPR7 and OPR8.	jasmonic acid	109-111	12-oxophytodienoate reductase7	Zea mays	176-180
22523204-2	2012	Single mutants produce wild-type levels of JA in most tissues, but the double mutant opr7 opr8 has dramatically reduced JA in all organs tested.	jasmonic acid	120-122	12-oxophytodienoate reductase7	Zea mays	85-89
22523204-2	2012	Single mutants produce wild-type levels of JA in most tissues, but the double mutant opr7 opr8 has dramatically reduced JA in all organs tested.	jasmonic acid	120-122	12-oxophytodienoate reductase8	Zea mays	90-94
22291202-8	2012	Although loss of function of FAD7 also inhibits the synthesis of jasmonate (JA), the effects of this desaturase on aphid resistance are not dependent on JA; other mutants impaired in JA synthesis (acx1) or perception (jai1-1) show wild-type levels of aphid susceptibility, and spr2 retains aphid resistance when treated with methyl jasmonate.	jasmonic acid	76-78	omega-3 fatty acid desaturase	Solanum lycopersicum	29-33
22291202-9	2012	Thus, FAD7 may influence JA-dependent defenses against chewing insects and SA-dependent defenses against aphids through independent effects on JA synthesis and SA signaling.	jasmonic acid	25-27	omega-3 fatty acid desaturase	Solanum lycopersicum	6-10
22291202-9	2012	Thus, FAD7 may influence JA-dependent defenses against chewing insects and SA-dependent defenses against aphids through independent effects on JA synthesis and SA signaling.	jasmonic acid	143-145	omega-3 fatty acid desaturase	Solanum lycopersicum	6-10
22523204-7	2012	Supporting the importance of JA in insect defense, opr7 opr8 is susceptible to beet armyworm.	jasmonic acid	29-31	12-oxophytodienoate reductase7	Zea mays	51-55
22523204-7	2012	Supporting the importance of JA in insect defense, opr7 opr8 is susceptible to beet armyworm.	jasmonic acid	29-31	12-oxophytodienoate reductase8	Zea mays	56-60
22158760-7	2012	Additionally, hormonal homeostasis seemed to be affected in nrt2, which displays priming of salicylic acid signaling and concomitant irregular functioning of the jasmonic acid and abscisic acid pathways upon infection.	jasmonic acid	162-175	nitrate transporter 2:1	Arabidopsis thaliana	60-64
22215670-2	2012	Jasmonoyl-isoleucine (JA-Ile) has been identified as a specific ligand binding the COI1-JAZ co-receptor to relieve repression of jasmonate responses.	jasmonic acid	22-24	RNI-like superfamily protein	Arabidopsis thaliana	83-87
22424472-5	2012	Further, MYC2 and HY1 have been shown to play important roles in jasmonic acid (JA) signaling pathways.	jasmonic acid	65-78	Basic helix-loop-helix (bHLH) DNA-binding family protein	Arabidopsis thaliana	9-13
22424472-5	2012	Further, MYC2 and HY1 have been shown to play important roles in jasmonic acid (JA) signaling pathways.	jasmonic acid	65-78	Plant heme oxygenase (decyclizing) family protein	Arabidopsis thaliana	18-21
22424472-5	2012	Further, MYC2 and HY1 have been shown to play important roles in jasmonic acid (JA) signaling pathways.	jasmonic acid	80-82	Basic helix-loop-helix (bHLH) DNA-binding family protein	Arabidopsis thaliana	9-13
22424472-5	2012	Further, MYC2 and HY1 have been shown to play important roles in jasmonic acid (JA) signaling pathways.	jasmonic acid	80-82	Plant heme oxygenase (decyclizing) family protein	Arabidopsis thaliana	18-21
22424472-8	2012	This study further demonstrates that HY1 additively or synergistically functions with HY5, however it works upstream to MYC2 in JA signaling pathways.	jasmonic acid	128-130	Plant heme oxygenase (decyclizing) family protein	Arabidopsis thaliana	37-40
22424472-8	2012	This study further demonstrates that HY1 additively or synergistically functions with HY5, however it works upstream to MYC2 in JA signaling pathways.	jasmonic acid	128-130	Basic helix-loop-helix (bHLH) DNA-binding family protein	Arabidopsis thaliana	120-124
22424472-9	2012	Taken together, this study demonstrates the functional interrelations of HY1, MYC2 and HY5 in light and JA signaling pathways.	jasmonic acid	104-106	Plant heme oxygenase (decyclizing) family protein	Arabidopsis thaliana	73-76
22424472-9	2012	Taken together, this study demonstrates the functional interrelations of HY1, MYC2 and HY5 in light and JA signaling pathways.	jasmonic acid	104-106	Basic helix-loop-helix (bHLH) DNA-binding family protein	Arabidopsis thaliana	78-82
22424472-9	2012	Taken together, this study demonstrates the functional interrelations of HY1, MYC2 and HY5 in light and JA signaling pathways.	jasmonic acid	104-106	Basic-leucine zipper (bZIP) transcription factor family protein	Arabidopsis thaliana	87-90
22213815-7	2012	Treatment of the vtc1 mutant with JA led to hyper-induction of MONODEHYDROASCORBATE REDUCTASE3, indicating that low ascorbic acid concentrations prime the response to JA.	jasmonic acid	34-36	Glucose-1-phosphate adenylyltransferase family protein	Arabidopsis thaliana	17-21
22213815-7	2012	Treatment of the vtc1 mutant with JA led to hyper-induction of MONODEHYDROASCORBATE REDUCTASE3, indicating that low ascorbic acid concentrations prime the response to JA.	jasmonic acid	167-169	Glucose-1-phosphate adenylyltransferase family protein	Arabidopsis thaliana	17-21
22213815-8	2012	Furthermore, NPR1 was found to be a positive regulator of JA-induced expression of MDHAR3 and TAT3.	jasmonic acid	58-60	regulatory protein (NPR1)	Arabidopsis thaliana	13-17
22213815-8	2012	Furthermore, NPR1 was found to be a positive regulator of JA-induced expression of MDHAR3 and TAT3.	jasmonic acid	58-60	tyrosine aminotransferase 3	Arabidopsis thaliana	94-98
22346763-3	2012	ARF6 and ARF8 induce jasmonate production, which in turn triggers expression of MYB21 and MYB24, encoding R2R3 MYB transcription factors that promote petal and stamen growth.	jasmonic acid	21-30	auxin response factor 6	Arabidopsis thaliana	0-4
22346763-3	2012	ARF6 and ARF8 induce jasmonate production, which in turn triggers expression of MYB21 and MYB24, encoding R2R3 MYB transcription factors that promote petal and stamen growth.	jasmonic acid	21-30	auxin response factor 8	Arabidopsis thaliana	9-13
22346763-3	2012	ARF6 and ARF8 induce jasmonate production, which in turn triggers expression of MYB21 and MYB24, encoding R2R3 MYB transcription factors that promote petal and stamen growth.	jasmonic acid	21-30	myb domain protein 21	Arabidopsis thaliana	80-85
22346763-3	2012	ARF6 and ARF8 induce jasmonate production, which in turn triggers expression of MYB21 and MYB24, encoding R2R3 MYB transcription factors that promote petal and stamen growth.	jasmonic acid	21-30	myb domain protein 24	Arabidopsis thaliana	90-95
23093946-5	2012	Like all other coi1 mutations, coi1(rsp) missense mutations impair Jasmonic Acid (JA) signaling resulting in JA-insensitivity.	jasmonic acid	67-80	RNI-like superfamily protein	Arabidopsis thaliana	15-19
21985558-11	2012	Furthermore, comparison of the pft1 transcriptome with transcriptomes after fungal and herbivore attack strongly suggests that PFT1 acts as a hub, integrating a variety of interdependent environmental stimuli, including light quality and jasmonic acid-dependent defences.	jasmonic acid	238-251	phytochrome and flowering time regulatory protein (PFT1)	Arabidopsis thaliana	31-35
21985558-11	2012	Furthermore, comparison of the pft1 transcriptome with transcriptomes after fungal and herbivore attack strongly suggests that PFT1 acts as a hub, integrating a variety of interdependent environmental stimuli, including light quality and jasmonic acid-dependent defences.	jasmonic acid	238-251	phytochrome and flowering time regulatory protein (PFT1)	Arabidopsis thaliana	127-131
22173100-3	2012	To identify the cis-acting DNA element involved in the early JA response at the transcriptional level, we analyzed the promoter of the Arabidopsis gene encoding jasmonate-ZIM domain2 protein (JAZ2).	jasmonic acid	61-63	TIFY domain/Divergent CCT motif family protein	Arabidopsis thaliana	192-196
22173100-4	2012	The full-length JAZ2 promoter in JAZ2::GUS plants is active in vegetative and reproductive tissue, with expression in stamen filaments being dependent on JA biosynthesis.	jasmonic acid	16-18	TIFY domain/Divergent CCT motif family protein	Arabidopsis thaliana	33-37
21746701-5	2012	RNA interference (RNAi)-mediated knockdown of NtMYC2a and NtMYC2b expression results in significant decreases in JA-inducible NtPMT1a transcript levels, as well as reduced levels of transcripts encoding other enzymes involved in nicotine and minor alkaloid biosynthesis, including an 80-90% reduction in the level of transcripts encoding the putative nicotine synthase gene NtA662.	jasmonic acid	113-115	putrescine N-methyltransferase 1	Nicotiana tabacum	126-132
22065421-8	2012	The interaction data suggest novel mechanisms for the involvement of TPL/TPR corepressors in auxin and jasmonic acid signaling.	jasmonic acid	103-116	Transducin family protein / WD-40 repeat family protein	Arabidopsis thaliana	69-72
23093946-5	2012	Like all other coi1 mutations, coi1(rsp) missense mutations impair Jasmonic Acid (JA) signaling resulting in JA-insensitivity.	jasmonic acid	67-80	RNI-like superfamily protein	Arabidopsis thaliana	31-35
23093946-5	2012	Like all other coi1 mutations, coi1(rsp) missense mutations impair Jasmonic Acid (JA) signaling resulting in JA-insensitivity.	jasmonic acid	82-84	RNI-like superfamily protein	Arabidopsis thaliana	15-19
23093946-5	2012	Like all other coi1 mutations, coi1(rsp) missense mutations impair Jasmonic Acid (JA) signaling resulting in JA-insensitivity.	jasmonic acid	82-84	RNI-like superfamily protein	Arabidopsis thaliana	31-35
23093946-5	2012	Like all other coi1 mutations, coi1(rsp) missense mutations impair Jasmonic Acid (JA) signaling resulting in JA-insensitivity.	jasmonic acid	109-111	RNI-like superfamily protein	Arabidopsis thaliana	31-35
23093946-9	2012	These enhanced disease resistance phenotypes depend on the JA signaling function of COI1.	jasmonic acid	59-61	RNI-like superfamily protein	Arabidopsis thaliana	84-88
21874228-6	2011	Furthermore, quantitative RT-PCR revealed a significant up-regulation of BORIS (p<0.001) and TSHZ1 transcripts (p<0.05) for JAs compared to nasal mucosa.	jasmonic acid	130-133	CCCTC-binding factor like	Homo sapiens	73-78
23071821-2	2012	Here we demonstrate that P6 additionally acts as a pathogenicity effector of an unique and novel type, modifying NPR1 (a key regulator of salicylic acid (SA)- and jasmonic acid (JA)-dependent signaling) and inhibiting SA-dependent defence responses We find that that transgene-mediated expression of P6 in Arabidopsis and transient expression in Nicotiana benthamiana has profound effects on defence signaling, suppressing expression of representative SA-responsive genes and increasing expression of representative JA-responsive genes.	jasmonic acid	163-176	regulatory protein (NPR1)	Arabidopsis thaliana	113-117
23071821-2	2012	Here we demonstrate that P6 additionally acts as a pathogenicity effector of an unique and novel type, modifying NPR1 (a key regulator of salicylic acid (SA)- and jasmonic acid (JA)-dependent signaling) and inhibiting SA-dependent defence responses We find that that transgene-mediated expression of P6 in Arabidopsis and transient expression in Nicotiana benthamiana has profound effects on defence signaling, suppressing expression of representative SA-responsive genes and increasing expression of representative JA-responsive genes.	jasmonic acid	178-180	regulatory protein (NPR1)	Arabidopsis thaliana	113-117
23071821-7	2012	NPR1 an important regulator of SA/JA crosstalk, was more highly expressed in the presence of P6 and introduction of the P6 transgene into a transgenic line expressing an NPR1:GFP fusion resulted in greatly increased fluorescence in nuclei even in the absence of SA.	jasmonic acid	34-36	natriuretic peptide receptor 1	Homo sapiens	0-4
22848670-5	2012	By applying the purified expressed apyrase, ATP synthase or ATPase 13A1 to wounded tomato leaves, it was determined that these ATP hydrolyzing enzymes suppressed the defensive genes regulated by the jasmonic acid and ethylene pathways in tomato plant.	jasmonic acid	199-212	apyrase	Solanum lycopersicum	35-42
22984514-3	2012	JAZ proteins are targets of the SCF(COI1) complex, and function as negative regulators in the JA signaling pathway.	jasmonic acid	0-2	RNI-like superfamily protein	Arabidopsis thaliana	36-40
21726384-6	2011	In addition, we provide data which indicate that the cdd1 mutation negatively regulates the npr1 mutation-induced hyperactivation of ethylene/jasmonic acid signalling.	jasmonic acid	142-155	regulatory protein (NPR1)	Arabidopsis thaliana	92-96
21874228-6	2011	Furthermore, quantitative RT-PCR revealed a significant up-regulation of BORIS (p<0.001) and TSHZ1 transcripts (p<0.05) for JAs compared to nasal mucosa.	jasmonic acid	130-133	teashirt zinc finger homeobox 1	Homo sapiens	96-101
22080599-7	2011	Thus, UGT76B1 attenuates SA-dependent plant defense in the absence of infection, promotes the JA response, and delays senescence.	jasmonic acid	94-96	UDP-Glycosyltransferase superfamily protein	Arabidopsis thaliana	6-13
21862481-8	2011	A loss or increase of disease resistance due to an alteration in TaJRLL1 function was correlated with attenuation or enhancement of the SA- and JA-dependent defence signalling pathways.	jasmonic acid	144-146	mannose/glucose-specific lectin	Triticum aestivum	65-72
21862481-9	2011	These results suggest that TaJRLL1 could be a component of the SA- and JA-dependent defence signalling pathways.	jasmonic acid	71-73	mannose/glucose-specific lectin	Triticum aestivum	27-34
21937677-3	2011	Here we show that the susceptibility to S. sclerotiorum of the aos mutant, deficient in biosynthesis of jasmonic acid (JA) and its precursor 12-oxophytadienoic acid, was elevated to a level reminiscent of that of hypersusceptible coi1 mutants.	jasmonic acid	119-121	RNI-like superfamily protein	Arabidopsis thaliana	230-234
22080599-8	2011	The ugt76b1 phenotypes were SA dependent, whereas UGT76B1 overexpression indicated that this gene possibly also has a direct effect on the JA pathway.	jasmonic acid	139-141	UDP-Glycosyltransferase superfamily protein	Arabidopsis thaliana	50-57
21897126-4	2011	In this review we highlight the interaction between SGT1 with other protein complexes and summarize the function of SGT1 in plant defense responses and development, including the recent advancements in the understanding of the role of SGT1 in jasmonic acid (JA) biosynthesis and signaling.	jasmonic acid	258-260	SGT1 homolog, MIS12 kinetochore complex assembly cochaperone	Homo sapiens	52-56
22212122-7	2011	Also, AtPRX53 showed upregulation in response to wounding and jasmonic acid treatments.	jasmonic acid	62-75	peroxidase 2	Arabidopsis thaliana	6-13
21849397-10	2011	These results demonstrate that CYP94B3 plays a major regulatory role in controlling the level of JA-Ile in plants.	jasmonic acid	97-99	cytochrome P450, family 94, subfamily B, polypeptide 3	Arabidopsis thaliana	31-38
22645537-2	2011	In Arabidopsis, the basic helix-loop-helix leucine zipper transcription factor (TF) MYC2 and the APETALA2/ETHYLENE RESPONSE FACTOR (AP2/ERF) domain TF ORA59 antagonistically control these distinct branches of the JA pathway.	jasmonic acid	213-215	octadecanoid-responsive AP2/ERF 59	Arabidopsis thaliana	151-156
22645537-9	2011	Our results suggest that by activating the MYC2-branch of the JA pathway, plants prevent stimulation of the ERF-branch by the herbivore, thereby becoming less attractive to the attacker.	jasmonic acid	62-64	Basic helix-loop-helix (bHLH) DNA-binding family protein	Arabidopsis thaliana	43-47
21926335-8	2011	We conclude that low ascorbate triggers ABA- and jasmonate-dependent signaling pathways that together regulate growth through ABI4.	jasmonic acid	49-58	Integrase-type DNA-binding superfamily protein	Arabidopsis thaliana	126-130
21564353-0	2011	Arabidopsis ocp3 mutant reveals a mechanism linking ABA and JA to pathogen-induced callose deposition.	jasmonic acid	60-62	overexpressor of cationic peroxidase 3	Arabidopsis thaliana	12-16
21564353-5	2011	Furthermore, we determined that potentiation of callose deposition in ocp3 plants, including enhanced disease resistance, also required jasmonic acid (JA) recognition though a COI1 receptor, however JA was not required for basal callose deposition following fungal infection.	jasmonic acid	136-149	overexpressor of cationic peroxidase 3	Arabidopsis thaliana	70-74
21911380-9	2011	The expression of ANAC071 and RAP2.6L were also promoted by ethylene and jasmonic acid, respectively.	jasmonic acid	73-86	NAC domain containing protein 71	Arabidopsis thaliana	18-25
21911380-9	2011	The expression of ANAC071 and RAP2.6L were also promoted by ethylene and jasmonic acid, respectively.	jasmonic acid	73-86	related to AP2 6l	Arabidopsis thaliana	30-37
21963667-3	2011	The endogenous bioactive JA-Ile conjugate mediates the binding of JAZ proteins to the F-box protein CORONATINE INSENSITIVE1 (COI1), part of the Skp1/Cullin/F-box SCF(COI1) ubiquitin E3 ligase complex.	jasmonic acid	25-27	RNI-like superfamily protein	Arabidopsis thaliana	125-129
21564353-5	2011	Furthermore, we determined that potentiation of callose deposition in ocp3 plants, including enhanced disease resistance, also required jasmonic acid (JA) recognition though a COI1 receptor, however JA was not required for basal callose deposition following fungal infection.	jasmonic acid	151-153	overexpressor of cationic peroxidase 3	Arabidopsis thaliana	70-74
21963667-3	2011	The endogenous bioactive JA-Ile conjugate mediates the binding of JAZ proteins to the F-box protein CORONATINE INSENSITIVE1 (COI1), part of the Skp1/Cullin/F-box SCF(COI1) ubiquitin E3 ligase complex.	jasmonic acid	25-27	S phase kinase-associated protein 1	Arabidopsis thaliana	144-148
22232904-5	2011	The protective effect of the salicylic and jasmonic acids against Septoria leaf blotch pathogen was caused by activation of oxalate oxidase, induction of anion and cation peroxidases, and decrease of catalase activity.	jasmonic acid	43-57	catalase-1	Triticum aestivum	200-208
21963667-3	2011	The endogenous bioactive JA-Ile conjugate mediates the binding of JAZ proteins to the F-box protein CORONATINE INSENSITIVE1 (COI1), part of the Skp1/Cullin/F-box SCF(COI1) ubiquitin E3 ligase complex.	jasmonic acid	25-27	RNI-like superfamily protein	Arabidopsis thaliana	166-170
21564353-5	2011	Furthermore, we determined that potentiation of callose deposition in ocp3 plants, including enhanced disease resistance, also required jasmonic acid (JA) recognition though a COI1 receptor, however JA was not required for basal callose deposition following fungal infection.	jasmonic acid	199-201	overexpressor of cationic peroxidase 3	Arabidopsis thaliana	70-74
21951802-2	2011	Exogenous application of jasmonate stimulates lateral root formation in wild type but inhibits lateral root formation in asa1-1.	jasmonic acid	25-34	anthranilate synthase alpha subunit 1	Arabidopsis thaliana	121-127
21951802-4	2011	To further elucidate the molecular mechanisms underlying jasmonate-mediated reduction of plasma membrane (PM)-resident PIN2 abundance, we have conducted a genetic screen to identify suppressors of asa1-1 (soa), which showed lateral root formation in the presence of jasmonate.	jasmonic acid	57-66	Auxin efflux carrier family protein	Arabidopsis thaliana	119-123
21951802-4	2011	To further elucidate the molecular mechanisms underlying jasmonate-mediated reduction of plasma membrane (PM)-resident PIN2 abundance, we have conducted a genetic screen to identify suppressors of asa1-1 (soa), which showed lateral root formation in the presence of jasmonate.	jasmonic acid	57-66	anthranilate synthase alpha subunit 1	Arabidopsis thaliana	197-203
21951802-4	2011	To further elucidate the molecular mechanisms underlying jasmonate-mediated reduction of plasma membrane (PM)-resident PIN2 abundance, we have conducted a genetic screen to identify suppressors of asa1-1 (soa), which showed lateral root formation in the presence of jasmonate.	jasmonic acid	266-275	anthranilate synthase alpha subunit 1	Arabidopsis thaliana	197-203
21951802-7	2011	In addition, jasmonate-induced PIN2:GFP reduction was blocked in these two mutants.	jasmonic acid	13-22	Auxin efflux carrier family protein	Arabidopsis thaliana	31-35
21737749-0	2011	Derepression of ethylene-stabilized transcription factors (EIN3/EIL1) mediates jasmonate and ethylene signaling synergy in Arabidopsis.	jasmonic acid	79-88	ETHYLENE-INSENSITIVE3-like 1	Arabidopsis thaliana	64-68
21545406-2	2011	Previously, we isolated the psc1 mutant that partially suppressed coi1 insensitivity to JA, and found that brassinosteroid (BR) was involved in JA signaling and negatively regulated JA inhibition of root growth in Arabidopsis.	jasmonic acid	88-90	Cytochrome P450 superfamily protein	Arabidopsis thaliana	28-32
21545406-4	2011	It was also shown that the "late" anthocyanin biosynthesis genes including DFR, LDOX, and UF3GT, were induced slightly by JA in the BR mutants relative to wild type.	jasmonic acid	122-124	UDP-glucose:flavonoid 3-o-glucosyltransferase	Arabidopsis thaliana	90-95
21545406-5	2011	Furthermore, the expression level of JA-induced Myb/bHLH transcription factors such as PAP1, PAP2, and GL3, which are components of the WD-repeat/Myb/bHLH transcriptional complexes that mediate the "late" anthocyanin biosynthesis genes, was lower in the BR mutants than that in wild type.	jasmonic acid	37-39	phosphatidic acid phosphatase 1	Arabidopsis thaliana	87-91
21545406-5	2011	Furthermore, the expression level of JA-induced Myb/bHLH transcription factors such as PAP1, PAP2, and GL3, which are components of the WD-repeat/Myb/bHLH transcriptional complexes that mediate the "late" anthocyanin biosynthesis genes, was lower in the BR mutants than that in wild type.	jasmonic acid	37-39	Purple acid phosphatases superfamily protein	Arabidopsis thaliana	93-97
21545406-5	2011	Furthermore, the expression level of JA-induced Myb/bHLH transcription factors such as PAP1, PAP2, and GL3, which are components of the WD-repeat/Myb/bHLH transcriptional complexes that mediate the "late" anthocyanin biosynthesis genes, was lower in the BR mutants than that in wild type.	jasmonic acid	37-39	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	Arabidopsis thaliana	103-106
21570857-4	2011	Using Arabidopsis thaliana plants stably expressing a promoter-beta-glucuronidase (GUS) fusion construct, it was shown that jasmonate treatment influenced the NICTABA promoter activity.	jasmonic acid	124-133	F-box protein PP2-B11-like	Nicotiana tabacum	159-166
21570857-7	2011	The data presented confirm a jasmonate-dependent response of the promoter sequence of the tobacco lectin gene in Arabidopsis.	jasmonic acid	29-38	F-box protein PP2-B11-like	Nicotiana tabacum	98-104
21719428-7	2011	Furthermore, under salt stress, leaf age-induced jasmonic acid accumulated in both the vte1 mutant and the wild type, but not in the vte4 mutant.	jasmonic acid	49-62	tocopherol cyclase, chloroplast / vitamin E deficient 1 (VTE1) / sucrose export defective 1 (SXD1)	Arabidopsis thaliana	87-91
21719428-8	2011	It is concluded that jasmonic acid and ethylene signaling pathways are down-regulated in mature leaves of salt-stressed vte4 plants.	jasmonic acid	21-34	gamma-tocopherol methyltransferase	Arabidopsis thaliana	120-124
21722410-1	2011	In Arabidopsis, non-expressor of pathogenesis related genes-1, NPR1 has been shown to be a positive regulator of the salicylic acid controlled systemic acquired resistance pathway and modulates the cross talk between SA and JA signaling.	jasmonic acid	224-226	regulatory protein (NPR1)	Arabidopsis thaliana	63-67
21357647-7	2011	Recently, grafting experiments with tomato mutants defective in JA biosynthesis and signaling provide new evidence that JA, rather than systemin, functions as the systemic wound signal, and that the biosynthesis of JA is regulated by the peptide systemin.	jasmonic acid	64-66	systemin	Solanum lycopersicum	246-254
21466556-3	2011	We show that mutations of ASA1 (ANTHRANILATE SYNTHASE a1) and the TIR1/AFBs (TRANSPORT INHIBITOR RESPONSE 1/AUXIN-SIGNALING F-BOX PROTEINs) auxin receptor genes impair the inhibitory effect of 5 muM MeJA on PIN2 endocytosis, suggesting that a lower concentration of jasmonate inhibits PIN2 endocytosis through interaction with the auxin pathway.	jasmonic acid	266-275	anthranilate synthase alpha subunit 1	Arabidopsis thaliana	32-56
21466556-3	2011	We show that mutations of ASA1 (ANTHRANILATE SYNTHASE a1) and the TIR1/AFBs (TRANSPORT INHIBITOR RESPONSE 1/AUXIN-SIGNALING F-BOX PROTEINs) auxin receptor genes impair the inhibitory effect of 5 muM MeJA on PIN2 endocytosis, suggesting that a lower concentration of jasmonate inhibits PIN2 endocytosis through interaction with the auxin pathway.	jasmonic acid	266-275	F-box/RNI-like superfamily protein	Arabidopsis thaliana	66-70
21466556-3	2011	We show that mutations of ASA1 (ANTHRANILATE SYNTHASE a1) and the TIR1/AFBs (TRANSPORT INHIBITOR RESPONSE 1/AUXIN-SIGNALING F-BOX PROTEINs) auxin receptor genes impair the inhibitory effect of 5 muM MeJA on PIN2 endocytosis, suggesting that a lower concentration of jasmonate inhibits PIN2 endocytosis through interaction with the auxin pathway.	jasmonic acid	266-275	F-box/RNI-like superfamily protein	Arabidopsis thaliana	77-107
21576194-2	2011	Jasmonate-inducible nicotine formation in Nicotiana plants has been shown to be suppressed by tobacco JAZ proteins, and be regulated by both MYC2-related and NIC2-locus ethylene response factor (ERF) transcription factors.	jasmonic acid	0-9	Basic helix-loop-helix (bHLH) DNA-binding family protein	Arabidopsis thaliana	141-145
21211864-8	2011	The expressions of the JA biosynthetic genes (StAOS2, StAOC, and StOPR3) were greatly increased by wounding reaching a maximum 2-4 h after wounding and declining thereafter.	jasmonic acid	23-25	allene oxide synthase, chloroplastic	Solanum tuberosum	46-52
21849815-3	2011	Transcript profiling of wheat cystatin genes at different days after inoculation (DAI) showed that JA pretreatment positively induced cystatin gene expression in both varieties with greater induction of expression in resistant variety than the susceptible one (P< 0.05).	jasmonic acid	99-101	LOC100286398	Triticum aestivum	30-38
21849815-3	2011	Transcript profiling of wheat cystatin genes at different days after inoculation (DAI) showed that JA pretreatment positively induced cystatin gene expression in both varieties with greater induction of expression in resistant variety than the susceptible one (P< 0.05).	jasmonic acid	99-101	LOC100286398	Triticum aestivum	134-142
21849815-8	2011	These findings suggest that jasmonic acid (JA) may act as a potential activator of induced resistance against Karnal bunt of wheat by upregulating cystatin gene expression.	jasmonic acid	28-41	LOC100286398	Triticum aestivum	147-155
21849815-8	2011	These findings suggest that jasmonic acid (JA) may act as a potential activator of induced resistance against Karnal bunt of wheat by upregulating cystatin gene expression.	jasmonic acid	43-45	LOC100286398	Triticum aestivum	147-155
21576464-1	2011	The phytohormone jasmonoyl-L-isoleucine (JA-Ile) signals through the COI1-JAZ coreceptor complex to control key aspects of plant growth, development, and immune function.	jasmonic acid	41-43	RNI-like superfamily protein	Arabidopsis thaliana	69-73
21487047-0	2011	Intronic T-DNA insertion renders Arabidopsis opr3 a conditional jasmonic acid-producing mutant.	jasmonic acid	64-77	oxophytodienoate-reductase 3	Arabidopsis thaliana	45-49
21487047-5	2011	Gas chromatography-mass spectrometry reveals that opr3 produces OPDA but no detectable JAs following wounding and looper infestation; unexpectedly, substantial levels of JAs accumulate in opr3 upon fungal infection.	jasmonic acid	170-173	oxophytodienoate-reductase 3	Arabidopsis thaliana	50-54
21487047-5	2011	Gas chromatography-mass spectrometry reveals that opr3 produces OPDA but no detectable JAs following wounding and looper infestation; unexpectedly, substantial levels of JAs accumulate in opr3 upon fungal infection.	jasmonic acid	170-173	oxophytodienoate-reductase 3	Arabidopsis thaliana	188-192
21487047-7	2011	Fungal resistance correlates with levels of JAs not OPDA; therefore, opr3 resistance to some pests is likely due to JA accumulation, and signaling activities ascribed to OPDA should be reassessed because opr3 can produce JAs.	jasmonic acid	44-47	oxophytodienoate-reductase 3	Arabidopsis thaliana	204-208
21487047-7	2011	Fungal resistance correlates with levels of JAs not OPDA; therefore, opr3 resistance to some pests is likely due to JA accumulation, and signaling activities ascribed to OPDA should be reassessed because opr3 can produce JAs.	jasmonic acid	221-224	oxophytodienoate-reductase 3	Arabidopsis thaliana	204-208
21418355-2	2011	Here, we functionally characterized the JA-inducible tobacco (Nicotiana tabacum) AP2/ERF factor ORC1, one of the members of the NIC2-locus ERFs that control nicotine biosynthesis and a close homologue of ORCA3, a transcriptional activator of alkaloid biosynthesis in Catharanthus roseus.	jasmonic acid	40-42	ethylene-responsive transcription factor RAP2-3-like	Nicotiana tabacum	81-84
21576464-4	2011	Metabolite analysis of wounded leaves showed that loss of CYP94B3 function in cyp94b3 mutants causes hyperaccumulation of JA-Ile and concomitant reduction in 12-hydroxy-JA-Ile (12OH-JA-Ile) content, whereas overexpression of this enzyme results in severe depletion of JA-Ile and corresponding changes in 12OH-JA-Ile levels.	jasmonic acid	122-124	cytochrome P450, family 94, subfamily B, polypeptide 3	Arabidopsis thaliana	58-65
21576464-4	2011	Metabolite analysis of wounded leaves showed that loss of CYP94B3 function in cyp94b3 mutants causes hyperaccumulation of JA-Ile and concomitant reduction in 12-hydroxy-JA-Ile (12OH-JA-Ile) content, whereas overexpression of this enzyme results in severe depletion of JA-Ile and corresponding changes in 12OH-JA-Ile levels.	jasmonic acid	122-124	cytochrome P450, family 94, subfamily B, polypeptide 3	Arabidopsis thaliana	78-85
21576464-4	2011	Metabolite analysis of wounded leaves showed that loss of CYP94B3 function in cyp94b3 mutants causes hyperaccumulation of JA-Ile and concomitant reduction in 12-hydroxy-JA-Ile (12OH-JA-Ile) content, whereas overexpression of this enzyme results in severe depletion of JA-Ile and corresponding changes in 12OH-JA-Ile levels.	jasmonic acid	169-171	cytochrome P450, family 94, subfamily B, polypeptide 3	Arabidopsis thaliana	58-65
21576464-4	2011	Metabolite analysis of wounded leaves showed that loss of CYP94B3 function in cyp94b3 mutants causes hyperaccumulation of JA-Ile and concomitant reduction in 12-hydroxy-JA-Ile (12OH-JA-Ile) content, whereas overexpression of this enzyme results in severe depletion of JA-Ile and corresponding changes in 12OH-JA-Ile levels.	jasmonic acid	169-171	cytochrome P450, family 94, subfamily B, polypeptide 3	Arabidopsis thaliana	78-85
21576464-6	2011	CYP94B3-overexpressing plants displayed phenotypes indicative of JA-Ile deficiency, including defects in male fertility, resistance to jasmonate-induced growth inhibition, and susceptibility to insect attack.	jasmonic acid	135-144	cytochrome P450, family 94, subfamily B, polypeptide 3	Arabidopsis thaliana	0-7
21551388-4	2011	In this study, we revealed that JAZ proteins interact with bHLH (Transparent Testa8, Glabra3 [GL3], and Enhancer of Glabra3 [EGL3]) and R2R3 MYB transcription factors (MYB75 and Glabra1), essential components of WD-repeat/bHLH/MYB transcriptional complexes, to repress JA-regulated anthocyanin accumulation and trichome initiation.	jasmonic acid	32-34	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	Arabidopsis thaliana	85-92
21334215-5	2011	We found that jasmonate suppressed expression levels of IRT1 and FRO2 but not their inducibility in response to Fe deficiency.	jasmonic acid	14-23	allograft inflammatory factor 1	Homo sapiens	56-60
21551388-4	2011	In this study, we revealed that JAZ proteins interact with bHLH (Transparent Testa8, Glabra3 [GL3], and Enhancer of Glabra3 [EGL3]) and R2R3 MYB transcription factors (MYB75 and Glabra1), essential components of WD-repeat/bHLH/MYB transcriptional complexes, to repress JA-regulated anthocyanin accumulation and trichome initiation.	jasmonic acid	32-34	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	Arabidopsis thaliana	94-97
21551388-4	2011	In this study, we revealed that JAZ proteins interact with bHLH (Transparent Testa8, Glabra3 [GL3], and Enhancer of Glabra3 [EGL3]) and R2R3 MYB transcription factors (MYB75 and Glabra1), essential components of WD-repeat/bHLH/MYB transcriptional complexes, to repress JA-regulated anthocyanin accumulation and trichome initiation.	jasmonic acid	32-34	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	Arabidopsis thaliana	116-123
21551388-4	2011	In this study, we revealed that JAZ proteins interact with bHLH (Transparent Testa8, Glabra3 [GL3], and Enhancer of Glabra3 [EGL3]) and R2R3 MYB transcription factors (MYB75 and Glabra1), essential components of WD-repeat/bHLH/MYB transcriptional complexes, to repress JA-regulated anthocyanin accumulation and trichome initiation.	jasmonic acid	32-34	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	Arabidopsis thaliana	125-129
21551388-4	2011	In this study, we revealed that JAZ proteins interact with bHLH (Transparent Testa8, Glabra3 [GL3], and Enhancer of Glabra3 [EGL3]) and R2R3 MYB transcription factors (MYB75 and Glabra1), essential components of WD-repeat/bHLH/MYB transcriptional complexes, to repress JA-regulated anthocyanin accumulation and trichome initiation.	jasmonic acid	32-34	production of anthocyanin pigment 1	Arabidopsis thaliana	168-173
21551388-4	2011	In this study, we revealed that JAZ proteins interact with bHLH (Transparent Testa8, Glabra3 [GL3], and Enhancer of Glabra3 [EGL3]) and R2R3 MYB transcription factors (MYB75 and Glabra1), essential components of WD-repeat/bHLH/MYB transcriptional complexes, to repress JA-regulated anthocyanin accumulation and trichome initiation.	jasmonic acid	32-34	myb domain protein 0	Arabidopsis thaliana	178-185
21551388-5	2011	Genetic and physiological evidence showed that JA regulates WD-repeat/bHLH/MYB complex-mediated anthocyanin accumulation and trichome initiation in a COI1-dependent manner.	jasmonic acid	47-49	RNI-like superfamily protein	Arabidopsis thaliana	150-154
21421415-0	2011	Arabidopsis NADPH oxidases, AtrbohD and AtrbohF, are essential for jasmonic acid-induced expression of genes regulated by MYC2 transcription factor.	jasmonic acid	67-80	Basic helix-loop-helix (bHLH) DNA-binding family protein	Arabidopsis thaliana	122-126
21421415-3	2011	Further experiments using knockout mutants lacking CORONATINE-INSENSITIVE1 (COI1), a master regulator of the JA-evoked response, and MYC2 indicated a possibility that the production of ROS via Atrbohs depends on the function of COI1, but not MYC2.	jasmonic acid	109-111	RNI-like superfamily protein	Arabidopsis thaliana	51-74
21421415-3	2011	Further experiments using knockout mutants lacking CORONATINE-INSENSITIVE1 (COI1), a master regulator of the JA-evoked response, and MYC2 indicated a possibility that the production of ROS via Atrbohs depends on the function of COI1, but not MYC2.	jasmonic acid	109-111	RNI-like superfamily protein	Arabidopsis thaliana	76-80
21445012-3	2011	However, the molecular basis for COI1-dependent JA-induced leaf senescence remains unknown.	jasmonic acid	48-50	RNI-like superfamily protein	Arabidopsis thaliana	33-37
21242320-3	2011	Here, we identified another bHLH transcription factor MYC3 which directly interacted with JAZs by virtue of its N-terminal region to regulate JA responses.	jasmonic acid	90-92	Basic helix-loop-helix (bHLH) DNA-binding family protein	Arabidopsis thaliana	54-58
21228101-6	2011	By contrast, (-)-LCF and (-)-12-hydroxyjasmonic acid were completely inactive with respect to activation of typical JA responses, such as induction of JA-responsive genes LOX2 and OPCL1 in Arabidopsis (Arabidopsis thaliana) or accumulation of plant volatile organic compounds in S. saman and lima bean (Phaseolus lunatus), generally considered to be mediated by JA-isoleucine in a COI1-dependent fashion.	jasmonic acid	151-153	lipoxygenase 2	Arabidopsis thaliana	171-175
21118264-0	2011	SGT1 regulates wounding- and herbivory-induced jasmonic acid accumulation and Nicotiana attenuata"s resistance to the specialist lepidopteran herbivore Manduca sexta.	jasmonic acid	47-60	uncharacterized LOC107820926	Nicotiana tabacum	0-4
21265900-0	2011	The COP9 signalosome controls jasmonic acid synthesis and plant responses to herbivory and pathogens.	jasmonic acid	30-43	COP9 signalosome subunit 8	Homo sapiens	4-8
21205029-0	2011	Jasmonic acid perception by COI1 involves inositol polyphosphates in Arabidopsis thaliana.	jasmonic acid	0-13	RNI-like superfamily protein	Arabidopsis thaliana	28-32
21205029-7	2011	The equivalent COI1 variants displayed a reduced capability to rescue jasmonate-mediated root growth inhibition or silique development in Arabidopsis coi1 mutants.	jasmonic acid	70-79	RNI-like superfamily protein	Arabidopsis thaliana	15-19
21205029-7	2011	The equivalent COI1 variants displayed a reduced capability to rescue jasmonate-mediated root growth inhibition or silique development in Arabidopsis coi1 mutants.	jasmonic acid	70-79	RNI-like superfamily protein	Arabidopsis thaliana	150-154
21205619-6	2011	ZmPep1 activates de novo synthesis of the hormones jasmonic acid and ethylene and induces the expression of genes encoding the defense proteins endochitinase A, PR-4, PRms, and SerPIN.	jasmonic acid	51-64	phosphoenolpyruvate carboxylase 1	Zea mays	0-6
21335373-7	2011	Moreover, the triple mutant myc2 myc3 myc4 is as impaired as coi1-1 in the activation of several, but not all, JA-mediated responses such as the defense against bacterial pathogens and insect herbivory.	jasmonic acid	111-113	Basic helix-loop-helix (bHLH) DNA-binding family protein	Arabidopsis thaliana	28-37
21335373-7	2011	Moreover, the triple mutant myc2 myc3 myc4 is as impaired as coi1-1 in the activation of several, but not all, JA-mediated responses such as the defense against bacterial pathogens and insect herbivory.	jasmonic acid	111-113	Basic helix-loop-helix (bHLH) DNA-binding family protein	Arabidopsis thaliana	38-42
21335373-7	2011	Moreover, the triple mutant myc2 myc3 myc4 is as impaired as coi1-1 in the activation of several, but not all, JA-mediated responses such as the defense against bacterial pathogens and insect herbivory.	jasmonic acid	111-113	RNI-like superfamily protein	Arabidopsis thaliana	61-67
21335373-8	2011	Our results show that MYC3 and MYC4 are activators of JA-regulated programs that act additively with MYC2 to regulate specifically different subsets of the JA-dependent transcriptional response.	jasmonic acid	54-56	Basic helix-loop-helix (bHLH) DNA-binding family protein	Arabidopsis thaliana	22-26
21335373-8	2011	Our results show that MYC3 and MYC4 are activators of JA-regulated programs that act additively with MYC2 to regulate specifically different subsets of the JA-dependent transcriptional response.	jasmonic acid	54-56	Basic helix-loop-helix (bHLH) DNA-binding family protein	Arabidopsis thaliana	31-35
21335373-8	2011	Our results show that MYC3 and MYC4 are activators of JA-regulated programs that act additively with MYC2 to regulate specifically different subsets of the JA-dependent transcriptional response.	jasmonic acid	54-56	Basic helix-loop-helix (bHLH) DNA-binding family protein	Arabidopsis thaliana	101-105
21335373-8	2011	Our results show that MYC3 and MYC4 are activators of JA-regulated programs that act additively with MYC2 to regulate specifically different subsets of the JA-dependent transcriptional response.	jasmonic acid	156-158	Basic helix-loop-helix (bHLH) DNA-binding family protein	Arabidopsis thaliana	22-26
21246258-0	2011	Two GCC boxes and AP2/ERF-domain transcription factor ORA59 in jasmonate/ethylene-mediated activation of the PDF1.2 promoter in Arabidopsis.	jasmonic acid	63-72	octadecanoid-responsive AP2/ERF 59	Arabidopsis thaliana	54-59
21246258-0	2011	Two GCC boxes and AP2/ERF-domain transcription factor ORA59 in jasmonate/ethylene-mediated activation of the PDF1.2 promoter in Arabidopsis.	jasmonic acid	63-72	plant defensin 1.2	Arabidopsis thaliana	109-115
21246258-5	2011	We show that the PDF1.2 promoter was activated synergistically by JA and the ET-releasing agent ethephon due to the activity of two GCC boxes.	jasmonic acid	66-68	plant defensin 1.2	Arabidopsis thaliana	17-23
21447791-7	2011	We speculate that JAZs interact with MYB21 and MYB24 to attenuate their transcriptional function; upon perception of JA signal, COI1 recruits JAZs to the SCF(COI1) complex for ubiquitination and degradation through the 26S proteasome; MYB21 and MYB24 are then released to activate expression of various genes essential for JA-regulated anther development and filament elongation.	jasmonic acid	18-20	myb domain protein 21	Arabidopsis thaliana	37-42
21447791-7	2011	We speculate that JAZs interact with MYB21 and MYB24 to attenuate their transcriptional function; upon perception of JA signal, COI1 recruits JAZs to the SCF(COI1) complex for ubiquitination and degradation through the 26S proteasome; MYB21 and MYB24 are then released to activate expression of various genes essential for JA-regulated anther development and filament elongation.	jasmonic acid	18-20	myb domain protein 24	Arabidopsis thaliana	47-52
21447791-7	2011	We speculate that JAZs interact with MYB21 and MYB24 to attenuate their transcriptional function; upon perception of JA signal, COI1 recruits JAZs to the SCF(COI1) complex for ubiquitination and degradation through the 26S proteasome; MYB21 and MYB24 are then released to activate expression of various genes essential for JA-regulated anther development and filament elongation.	jasmonic acid	18-20	RNI-like superfamily protein	Arabidopsis thaliana	158-162
21447791-7	2011	We speculate that JAZs interact with MYB21 and MYB24 to attenuate their transcriptional function; upon perception of JA signal, COI1 recruits JAZs to the SCF(COI1) complex for ubiquitination and degradation through the 26S proteasome; MYB21 and MYB24 are then released to activate expression of various genes essential for JA-regulated anther development and filament elongation.	jasmonic acid	18-20	myb domain protein 21	Arabidopsis thaliana	235-240
21447791-7	2011	We speculate that JAZs interact with MYB21 and MYB24 to attenuate their transcriptional function; upon perception of JA signal, COI1 recruits JAZs to the SCF(COI1) complex for ubiquitination and degradation through the 26S proteasome; MYB21 and MYB24 are then released to activate expression of various genes essential for JA-regulated anther development and filament elongation.	jasmonic acid	18-20	myb domain protein 24	Arabidopsis thaliana	245-250
21173027-6	2011	We found that RCA was down-regulated at the levels of transcript and protein abundance by JA in a COI1-dependent manner.	jasmonic acid	90-92	RNI-like superfamily protein	Arabidopsis thaliana	98-102
21030507-9	2011	Exogenous SA inhibited JA-inducible PDF1.2 expression in the wild type but not in wrky50 or wrky51 mutant plants.	jasmonic acid	23-25	protodermal factor 1	Arabidopsis thaliana	36-40
21030507-0	2011	Low oleic acid-derived repression of jasmonic acid-inducible defense responses requires the WRKY50 and WRKY51 proteins.	jasmonic acid	37-50	WRKY DNA-binding protein 50	Arabidopsis thaliana	92-98
21030507-0	2011	Low oleic acid-derived repression of jasmonic acid-inducible defense responses requires the WRKY50 and WRKY51 proteins.	jasmonic acid	37-50	WRKY DNA-binding protein 51	Arabidopsis thaliana	103-109
21335373-8	2011	Our results show that MYC3 and MYC4 are activators of JA-regulated programs that act additively with MYC2 to regulate specifically different subsets of the JA-dependent transcriptional response.	jasmonic acid	156-158	Basic helix-loop-helix (bHLH) DNA-binding family protein	Arabidopsis thaliana	31-35
21335373-8	2011	Our results show that MYC3 and MYC4 are activators of JA-regulated programs that act additively with MYC2 to regulate specifically different subsets of the JA-dependent transcriptional response.	jasmonic acid	156-158	Basic helix-loop-helix (bHLH) DNA-binding family protein	Arabidopsis thaliana	101-105
21030507-10	2011	These results show that the WRKY50 and WRKY51 proteins mediate both SA- and low-18:1-dependent repression of JA signaling.	jasmonic acid	109-111	WRKY DNA-binding protein 50	Arabidopsis thaliana	28-34
21030507-3	2011	We show that repression of JA-mediated signaling under low-18:1 conditions is mediated via the WRKY50 and WRKY51 proteins.	jasmonic acid	27-29	WRKY DNA-binding protein 50	Arabidopsis thaliana	95-101
21030507-10	2011	These results show that the WRKY50 and WRKY51 proteins mediate both SA- and low-18:1-dependent repression of JA signaling.	jasmonic acid	109-111	WRKY DNA-binding protein 51	Arabidopsis thaliana	39-45
21030507-3	2011	We show that repression of JA-mediated signaling under low-18:1 conditions is mediated via the WRKY50 and WRKY51 proteins.	jasmonic acid	27-29	WRKY DNA-binding protein 51	Arabidopsis thaliana	106-112
21069430-6	2011	RAP2.6 and RAP2.6L were responsive to stress hormones like jasmonic acid, salicylic acid, abscisic acid and ethylene in addition to salt and drought.	jasmonic acid	59-72	related to AP2 6	Arabidopsis thaliana	0-6
21512327-2	2010	We have recently demonstrated the genetic and molecular relationships of MYC2 and SPA1 in light and JA (jasmonic acid) signaling pathways.	jasmonic acid	104-117	Basic helix-loop-helix (bHLH) DNA-binding family protein	Arabidopsis thaliana	73-77
21069430-6	2011	RAP2.6 and RAP2.6L were responsive to stress hormones like jasmonic acid, salicylic acid, abscisic acid and ethylene in addition to salt and drought.	jasmonic acid	59-72	related to AP2 6l	Arabidopsis thaliana	11-18
21039274-6	2010	In addition, the antagonistic crosstalk between the salicylic acid and jasmonic acid signaling pathways seems to be affected in ntt1-2.	jasmonic acid	71-84	nucleotide transporter 1	Arabidopsis thaliana	128-134
21512327-2	2010	We have recently demonstrated the genetic and molecular relationships of MYC2 and SPA1 in light and JA (jasmonic acid) signaling pathways.	jasmonic acid	100-102	Basic helix-loop-helix (bHLH) DNA-binding family protein	Arabidopsis thaliana	73-77
21512327-2	2010	We have recently demonstrated the genetic and molecular relationships of MYC2 and SPA1 in light and JA (jasmonic acid) signaling pathways.	jasmonic acid	100-102	SPA (suppressor of phyA-105) protein family	Arabidopsis thaliana	82-86
22076141-6	2011	Arabidopsis mutants jar1 and coi1 altered in JA signaling and a MAP kinase mutant (mpk6), unlike salicylic acid- (SA) related mutant eds16/sid2-1, were unable to defend from fungal attack even when N-isobutyl decanamide was supplied, indicating that alkamides could modulate some necrotrophic-associated defense responses through JA-dependent and MPK6-regulated signaling pathways.	jasmonic acid	45-47	RNI-like superfamily protein	Arabidopsis thaliana	29-33
21512327-2	2010	We have recently demonstrated the genetic and molecular relationships of MYC2 and SPA1 in light and JA (jasmonic acid) signaling pathways.	jasmonic acid	104-117	SPA (suppressor of phyA-105) protein family	Arabidopsis thaliana	82-86
20839007-3	2010	In Arabidopsis thaliana, SA strongly antagonizes the jasmonic acid (JA) signaling pathway, resulting in the downregulation of a large set of JA-responsive genes, including the marker genes PDF1.2 and VSP2.	jasmonic acid	53-66	plant defensin 1.2	Arabidopsis thaliana	189-195
20927106-5	2010	COI1 contains an open pocket that recognizes the bioactive hormone (3R,7S)-jasmonoyl-l-isoleucine (JA-Ile) with high specificity.	jasmonic acid	99-101	RNI-like superfamily protein	Arabidopsis thaliana	0-4
20839007-3	2010	In Arabidopsis thaliana, SA strongly antagonizes the jasmonic acid (JA) signaling pathway, resulting in the downregulation of a large set of JA-responsive genes, including the marker genes PDF1.2 and VSP2.	jasmonic acid	53-66	vegetative storage protein 2	Arabidopsis thaliana	200-204
20706774-11	2010	The SRS7 gene was expressed mainly in the filaments of flowers, where the DEFECTIVE-IN-ANTHER-DEHISCENCE 1 (DAD1) enzyme catalyzing jasmonic acid (JA) biosynthesis is accumulated immediately before flower opening.	jasmonic acid	132-145	alpha/beta-Hydrolases superfamily protein	Arabidopsis thaliana	74-106
20810545-0	2010	Arabidopsis histone methyltransferase SET DOMAIN GROUP8 mediates induction of the jasmonate/ethylene pathway genes in plant defense response to necrotrophic fungi.	jasmonic acid	82-91	histone-lysine N-methyltransferase	Arabidopsis thaliana	38-55
20810545-3	2010	In support of this idea, we demonstrate here that the Arabidopsis (Arabidopsis thaliana) histone methyltransferase SET DOMAIN GROUP8 (SDG8) plays a crucial role in plant defense against fungal pathogens by regulating a subset of genes within the jasmonic acid (JA) and/or ethylene signaling pathway.	jasmonic acid	246-259	histone-lysine N-methyltransferase	Arabidopsis thaliana	115-132
20810545-3	2010	In support of this idea, we demonstrate here that the Arabidopsis (Arabidopsis thaliana) histone methyltransferase SET DOMAIN GROUP8 (SDG8) plays a crucial role in plant defense against fungal pathogens by regulating a subset of genes within the jasmonic acid (JA) and/or ethylene signaling pathway.	jasmonic acid	246-259	histone-lysine N-methyltransferase	Arabidopsis thaliana	134-138
20706774-11	2010	The SRS7 gene was expressed mainly in the filaments of flowers, where the DEFECTIVE-IN-ANTHER-DEHISCENCE 1 (DAD1) enzyme catalyzing jasmonic acid (JA) biosynthesis is accumulated immediately before flower opening.	jasmonic acid	132-145	alpha/beta-Hydrolases superfamily protein	Arabidopsis thaliana	108-112
20839007-3	2010	In Arabidopsis thaliana, SA strongly antagonizes the jasmonic acid (JA) signaling pathway, resulting in the downregulation of a large set of JA-responsive genes, including the marker genes PDF1.2 and VSP2.	jasmonic acid	68-70	plant defensin 1.2	Arabidopsis thaliana	189-195
20706774-11	2010	The SRS7 gene was expressed mainly in the filaments of flowers, where the DEFECTIVE-IN-ANTHER-DEHISCENCE 1 (DAD1) enzyme catalyzing jasmonic acid (JA) biosynthesis is accumulated immediately before flower opening.	jasmonic acid	147-149	alpha/beta-Hydrolases superfamily protein	Arabidopsis thaliana	74-106
20810545-3	2010	In support of this idea, we demonstrate here that the Arabidopsis (Arabidopsis thaliana) histone methyltransferase SET DOMAIN GROUP8 (SDG8) plays a crucial role in plant defense against fungal pathogens by regulating a subset of genes within the jasmonic acid (JA) and/or ethylene signaling pathway.	jasmonic acid	261-263	histone-lysine N-methyltransferase	Arabidopsis thaliana	115-132
20810545-3	2010	In support of this idea, we demonstrate here that the Arabidopsis (Arabidopsis thaliana) histone methyltransferase SET DOMAIN GROUP8 (SDG8) plays a crucial role in plant defense against fungal pathogens by regulating a subset of genes within the jasmonic acid (JA) and/or ethylene signaling pathway.	jasmonic acid	261-263	histone-lysine N-methyltransferase	Arabidopsis thaliana	134-138
20706774-11	2010	The SRS7 gene was expressed mainly in the filaments of flowers, where the DEFECTIVE-IN-ANTHER-DEHISCENCE 1 (DAD1) enzyme catalyzing jasmonic acid (JA) biosynthesis is accumulated immediately before flower opening.	jasmonic acid	147-149	alpha/beta-Hydrolases superfamily protein	Arabidopsis thaliana	108-112
20839007-3	2010	In Arabidopsis thaliana, SA strongly antagonizes the jasmonic acid (JA) signaling pathway, resulting in the downregulation of a large set of JA-responsive genes, including the marker genes PDF1.2 and VSP2.	jasmonic acid	68-70	vegetative storage protein 2	Arabidopsis thaliana	200-204
20839007-3	2010	In Arabidopsis thaliana, SA strongly antagonizes the jasmonic acid (JA) signaling pathway, resulting in the downregulation of a large set of JA-responsive genes, including the marker genes PDF1.2 and VSP2.	jasmonic acid	141-143	plant defensin 1.2	Arabidopsis thaliana	189-195
20839007-3	2010	In Arabidopsis thaliana, SA strongly antagonizes the jasmonic acid (JA) signaling pathway, resulting in the downregulation of a large set of JA-responsive genes, including the marker genes PDF1.2 and VSP2.	jasmonic acid	141-143	vegetative storage protein 2	Arabidopsis thaliana	200-204
20839007-5	2010	Activation of genes encoding key enzymes in the JA biosynthesis pathway, such as LOX2, AOS, AOC2, and OPR3 was also repressed by SA, suggesting that the JA biosynthesis pathway may be a target for SA-mediated antagonism.	jasmonic acid	48-50	lipoxygenase 2	Arabidopsis thaliana	81-85
20839007-5	2010	Activation of genes encoding key enzymes in the JA biosynthesis pathway, such as LOX2, AOS, AOC2, and OPR3 was also repressed by SA, suggesting that the JA biosynthesis pathway may be a target for SA-mediated antagonism.	jasmonic acid	48-50	allene oxide cyclase 2	Arabidopsis thaliana	92-96
20864543-1	2010	MYC2 is a basic helix-loop-helix transcription factor that cross talks with light, abscisic acid (ABA), and jasmonic acid (JA) signaling pathways.	jasmonic acid	108-121	Basic helix-loop-helix (bHLH) DNA-binding family protein	Arabidopsis thaliana	0-4
20864543-1	2010	MYC2 is a basic helix-loop-helix transcription factor that cross talks with light, abscisic acid (ABA), and jasmonic acid (JA) signaling pathways.	jasmonic acid	123-125	Basic helix-loop-helix (bHLH) DNA-binding family protein	Arabidopsis thaliana	0-4
20864543-4	2010	Our studies have also revealed that MYC2-mediated ABA and JA responses are further modulated by SPA1.	jasmonic acid	58-60	Basic helix-loop-helix (bHLH) DNA-binding family protein	Arabidopsis thaliana	36-40
20864543-4	2010	Our studies have also revealed that MYC2-mediated ABA and JA responses are further modulated by SPA1.	jasmonic acid	58-60	SPA (suppressor of phyA-105) protein family	Arabidopsis thaliana	96-100
20864543-5	2010	Taken together, this study demonstrates the molecular and physiological interrelations of MYC2 and SPA1 in light, ABA, and JA signaling pathways.	jasmonic acid	123-125	Basic helix-loop-helix (bHLH) DNA-binding family protein	Arabidopsis thaliana	90-94
20864543-5	2010	Taken together, this study demonstrates the molecular and physiological interrelations of MYC2 and SPA1 in light, ABA, and JA signaling pathways.	jasmonic acid	123-125	SPA (suppressor of phyA-105) protein family	Arabidopsis thaliana	99-103
20839007-5	2010	Activation of genes encoding key enzymes in the JA biosynthesis pathway, such as LOX2, AOS, AOC2, and OPR3 was also repressed by SA, suggesting that the JA biosynthesis pathway may be a target for SA-mediated antagonism.	jasmonic acid	48-50	oxophytodienoate-reductase 3	Arabidopsis thaliana	102-106
20839007-5	2010	Activation of genes encoding key enzymes in the JA biosynthesis pathway, such as LOX2, AOS, AOC2, and OPR3 was also repressed by SA, suggesting that the JA biosynthesis pathway may be a target for SA-mediated antagonism.	jasmonic acid	153-155	lipoxygenase 2	Arabidopsis thaliana	81-85
20839007-5	2010	Activation of genes encoding key enzymes in the JA biosynthesis pathway, such as LOX2, AOS, AOC2, and OPR3 was also repressed by SA, suggesting that the JA biosynthesis pathway may be a target for SA-mediated antagonism.	jasmonic acid	153-155	allene oxide cyclase 2	Arabidopsis thaliana	92-96
20839007-5	2010	Activation of genes encoding key enzymes in the JA biosynthesis pathway, such as LOX2, AOS, AOC2, and OPR3 was also repressed by SA, suggesting that the JA biosynthesis pathway may be a target for SA-mediated antagonism.	jasmonic acid	153-155	oxophytodienoate-reductase 3	Arabidopsis thaliana	102-106
20839007-6	2010	To test this, we made use of the mutant aos/dde2, which is completely blocked in its ability to produce JAs because of a mutation in the ALLENE OXIDE SYNTHASE gene.	jasmonic acid	104-107	allene oxide synthase	Arabidopsis thaliana	40-43
20839007-8	2010	Bypassing JA biosynthesis by exogenous application of methyl jasmonate (MeJA) rescued this JA-responsive phenotype in aos/dde2.	jasmonic acid	10-12	allene oxide synthase	Arabidopsis thaliana	118-121
20839007-8	2010	Bypassing JA biosynthesis by exogenous application of methyl jasmonate (MeJA) rescued this JA-responsive phenotype in aos/dde2.	jasmonic acid	74-76	allene oxide synthase	Arabidopsis thaliana	118-121
20839007-9	2010	Application of SA suppressed MeJA-induced PDF1.2 expression to the same level in the aos/dde2 mutant as in wild-type Col-0 plants, indicating that SA-mediated suppression of JA-responsive gene expression is targeted at a position downstream of the JA biosynthesis pathway.	jasmonic acid	31-33	protodermal factor 1	Arabidopsis thaliana	42-46
20839007-9	2010	Application of SA suppressed MeJA-induced PDF1.2 expression to the same level in the aos/dde2 mutant as in wild-type Col-0 plants, indicating that SA-mediated suppression of JA-responsive gene expression is targeted at a position downstream of the JA biosynthesis pathway.	jasmonic acid	31-33	allene oxide synthase	Arabidopsis thaliana	85-88
20699268-3	2010	It was observed that the coi1 mutant, which is largely unresponsive to growth inhibition by JAs, was also partially unresponsive to growth inhibition by ethylene and by its immediate precursor, 1-aminocyclopropane-1-carboxylic acid (ACC), in the light but not in the dark.	jasmonic acid	92-95	RNI-like superfamily protein	Arabidopsis thaliana	25-29
20561213-3	2010	*AtPDF1.1, which was originally considered to be seed-specific, is demonstrated to be locally induced in leaves upon fungal attack and exhibits an expression profile distinct from that of AtPDF1.2a, a gene frequently used as marker for the ethylene/jasmonate-mediated signaling pathway.	jasmonic acid	249-258	low-molecular-weight cysteine-rich 67	Arabidopsis thaliana	1-9
20930539-4	2010	However, ET-insensitivity combined with otherwise normal levels of JA in mETR1 plants promoted faster caterpillar growth, which correlated with reduced accumulation of the alkaloidal direct defense nicotine in mETR1 compared to WT plants.	jasmonic acid	67-69	CUGBP, Elav-like family member 3	Mus musculus	73-78
20711606-4	2010	CJ is postulated to be biosynthetically derived from jasmonic acid, which can boost its own production through transcriptional up-regulation of the octadecanoid biosynthesis genes LOX2, AOS and OPR3.	jasmonic acid	53-66	lipoxygenase 2	Arabidopsis thaliana	180-184
20711606-4	2010	CJ is postulated to be biosynthetically derived from jasmonic acid, which can boost its own production through transcriptional up-regulation of the octadecanoid biosynthesis genes LOX2, AOS and OPR3.	jasmonic acid	53-66	oxophytodienoate-reductase 3	Arabidopsis thaliana	194-198
20836879-0	2010	OCP3 is an important modulator of NPR1-mediated jasmonic acid-dependent induced defenses in Arabidopsis.	jasmonic acid	48-61	overexpressor of cationic peroxidase 3	Arabidopsis thaliana	0-4
20836879-0	2010	OCP3 is an important modulator of NPR1-mediated jasmonic acid-dependent induced defenses in Arabidopsis.	jasmonic acid	48-61	regulatory protein (NPR1)	Arabidopsis thaliana	34-38
20836879-4	2010	RESULTS: Here, we have assessed the implication of the transcriptional regulator OCP3 in SA- and JA-dependent induced defenses.	jasmonic acid	97-99	overexpressor of cationic peroxidase 3	Arabidopsis thaliana	81-85
20836879-6	2010	However, we found that ocp3 plants are impaired in a Pseudomonas fluorescens WCS417r-triggered induced systemic resistance (ISR) against both Pseudomonas syrinagae DC3000 and Hyaloperonospora arabidopsidis, and we show that this impairment is not due to a defect in JA-perception.	jasmonic acid	266-268	overexpressor of cationic peroxidase 3	Arabidopsis thaliana	23-27
20836879-8	2010	In addition, we provide evidence showing that the over-expression of an engineered cytosolic isoform of the disease resistance regulator NPR1 restores the impaired JA-induced disease resistance in ocp3 plants.	jasmonic acid	164-166	regulatory protein (NPR1)	Arabidopsis thaliana	137-141
20836879-8	2010	In addition, we provide evidence showing that the over-expression of an engineered cytosolic isoform of the disease resistance regulator NPR1 restores the impaired JA-induced disease resistance in ocp3 plants.	jasmonic acid	164-166	overexpressor of cationic peroxidase 3	Arabidopsis thaliana	197-201
20836879-9	2010	CONCLUSIONS: Our findings point to a model in which OCP3 may modulate the nucleocytosolic function of NPR1 in the regulation of JA-dependent induced defense responses.	jasmonic acid	128-130	overexpressor of cationic peroxidase 3	Arabidopsis thaliana	52-56
20836879-9	2010	CONCLUSIONS: Our findings point to a model in which OCP3 may modulate the nucleocytosolic function of NPR1 in the regulation of JA-dependent induced defense responses.	jasmonic acid	128-130	regulatory protein (NPR1)	Arabidopsis thaliana	102-106
20561213-3	2010	*AtPDF1.1, which was originally considered to be seed-specific, is demonstrated to be locally induced in leaves upon fungal attack and exhibits an expression profile distinct from that of AtPDF1.2a, a gene frequently used as marker for the ethylene/jasmonate-mediated signaling pathway.	jasmonic acid	249-258	protodermal factor 1	Arabidopsis thaliana	1-7
20798327-5	2010	Vegetative parts of cue1/eno1(+/-) contained increased free amino acids and jasmonic acid but had normal wax biosynthesis.	jasmonic acid	76-89	Glucose-6-phosphate/phosphate translocator-like protein	Arabidopsis thaliana	20-24
20525008-2	2010	The F-box protein COI1 functions both as a receptor for jasmonoyl-l-isoleucine (JA-Ile) and as the component of an E3-ubiquitin ligase complex (SCF(COI1) ) that targets JAZ transcriptional regulators for degradation.	jasmonic acid	80-82	RNI-like superfamily protein	Arabidopsis thaliana	18-22
20525008-3	2010	A key feature of JAZ proteins is the C-terminal Jas motif that mediates the JA-Ile-dependent interaction with COI1.	jasmonic acid	48-51	RNI-like superfamily protein	Arabidopsis thaliana	110-114
20525008-3	2010	A key feature of JAZ proteins is the C-terminal Jas motif that mediates the JA-Ile-dependent interaction with COI1.	jasmonic acid	17-19	RNI-like superfamily protein	Arabidopsis thaliana	110-114
20798327-5	2010	Vegetative parts of cue1/eno1(+/-) contained increased free amino acids and jasmonic acid but had normal wax biosynthesis.	jasmonic acid	76-89	enolase 1	Arabidopsis thaliana	25-29
20345608-3	2010	PED3 is involved in the import of several biologically important molecules into the peroxisome, including very-long-chain fatty acids associated with the breakdown of seed-reserve lipids, and precursors of auxin and jasmonic acid.	jasmonic acid	216-229	peroxisomal ABC transporter 1	Arabidopsis thaliana	0-4
20488891-6	2010	Direct analysis of H(2)O(2)-glutathione interactions in cat2 gr1 double mutants established that GR1-dependent glutathione status is required for multiple responses to increased H(2)O(2) availability, including limitation of lesion formation, accumulation of salicylic acid, induction of pathogenesis-related genes, and signaling through jasmonic acid pathways.	jasmonic acid	338-351	glutathione-disulfide reductase	Arabidopsis thaliana	97-100
20521949-3	2010	Disease resistance was enhanced in transgenic wheat and Arabidopsis plants that constitutively overexpress the NONEXPRESSOR OF PATHOGENESIS-RELATED GENES 1 (NPR1) gene, which regulates salicylic acid (SA) signaling and modulates the activation of jasmonic acid (JA)-dependent defenses.	jasmonic acid	247-260	regulatory protein (NPR1)	Arabidopsis thaliana	111-155
20521949-3	2010	Disease resistance was enhanced in transgenic wheat and Arabidopsis plants that constitutively overexpress the NONEXPRESSOR OF PATHOGENESIS-RELATED GENES 1 (NPR1) gene, which regulates salicylic acid (SA) signaling and modulates the activation of jasmonic acid (JA)-dependent defenses.	jasmonic acid	247-260	regulatory protein (NPR1)	Arabidopsis thaliana	157-161
20521949-3	2010	Disease resistance was enhanced in transgenic wheat and Arabidopsis plants that constitutively overexpress the NONEXPRESSOR OF PATHOGENESIS-RELATED GENES 1 (NPR1) gene, which regulates salicylic acid (SA) signaling and modulates the activation of jasmonic acid (JA)-dependent defenses.	jasmonic acid	262-264	regulatory protein (NPR1)	Arabidopsis thaliana	111-155
20521949-3	2010	Disease resistance was enhanced in transgenic wheat and Arabidopsis plants that constitutively overexpress the NONEXPRESSOR OF PATHOGENESIS-RELATED GENES 1 (NPR1) gene, which regulates salicylic acid (SA) signaling and modulates the activation of jasmonic acid (JA)-dependent defenses.	jasmonic acid	262-264	regulatory protein (NPR1)	Arabidopsis thaliana	157-161
20521949-8	2010	However, the hyperresistance of the JA pathway mutants opr3, coi1, and jar1 indicates that this pathway contributes to susceptibility.	jasmonic acid	36-38	RNI-like superfamily protein	Arabidopsis thaliana	61-65
20521949-8	2010	However, the hyperresistance of the JA pathway mutants opr3, coi1, and jar1 indicates that this pathway contributes to susceptibility.	jasmonic acid	36-38	Auxin-responsive GH3 family protein	Arabidopsis thaliana	71-75
20354503-0	2010	The Arabidopsis P450 protein CYP82C2 modulates jasmonate-induced root growth inhibition, defense gene expression and indole glucosinolate biosynthesis.	jasmonic acid	47-56	cytochrome P450, family 82, subfamily C, polypeptide 2	Arabidopsis thaliana	29-36
20383062-4	2010	Here we examine the position of PFT1/MED25 within the JA pathway and discuss its role in "mediating" the JA response.	jasmonic acid	54-56	mediator complex subunit 25	Homo sapiens	37-42
20354503-8	2010	Conversely, the enhanced resistance to B. cinerea in CYP82C2-overexpressing plants is accompanied by increased expression of JA-induced defense genes and elevated levels of JA-induced IGs.	jasmonic acid	125-127	cytochrome P450, family 82, subfamily C, polypeptide 2	Arabidopsis thaliana	53-60
20354503-8	2010	Conversely, the enhanced resistance to B. cinerea in CYP82C2-overexpressing plants is accompanied by increased expression of JA-induced defense genes and elevated levels of JA-induced IGs.	jasmonic acid	173-175	cytochrome P450, family 82, subfamily C, polypeptide 2	Arabidopsis thaliana	53-60
20354503-9	2010	We demonstrate that CYP82C2 affects JA-induced accumulation of the IG biosynthetic precursor tryptophan (Trp), but not the JA-induced IAA or pathogen-induced camalexin.	jasmonic acid	36-38	cytochrome P450, family 82, subfamily C, polypeptide 2	Arabidopsis thaliana	20-27
20354503-10	2010	Together, our results support a hypothesis that CYP82C2 may act in the metabolism of Trp-derived secondary metabolites under conditions in which JA levels are elevated.	jasmonic acid	145-147	cytochrome P450, family 82, subfamily C, polypeptide 2	Arabidopsis thaliana	48-55
20367464-6	2010	The contrasting responses to the two pathogens were correlated with opposite effects on pathogen-induced expression of two genes; salicylic acid-regulated PATHOGENESIS-RELATED1 (PR1) and jasmonic acid-regulated PDF1.2.	jasmonic acid	187-200	plant defensin 1.2	Arabidopsis thaliana	211-217
20225092-3	2010	The transcript of TaPIEP1 was significantly and rapidly induced by treatments with B. sorokiniana, and with ethylene (ET), jasmonate (JA), and abscisic acid.	jasmonic acid	123-132	ethylene-response factor C3	Triticum aestivum	18-25
20225092-3	2010	The transcript of TaPIEP1 was significantly and rapidly induced by treatments with B. sorokiniana, and with ethylene (ET), jasmonate (JA), and abscisic acid.	jasmonic acid	134-136	ethylene-response factor C3	Triticum aestivum	18-25
20395151-5	2010	PACOR is an effective tool for elucidating the interaction between COI1 and JA.	jasmonic acid	76-78	RNI-like superfamily protein	Arabidopsis thaliana	67-71
20367466-4	2010	Here, we describe an enhancer of edr1 mutant, eed3, which forms spontaneous lesions in the absence of pathogen infection, constitutively expresses both SA- and methyl jasmonate (JA)-inducible defense genes, and is dwarfed.	jasmonic acid	167-176	Protein kinase superfamily protein	Arabidopsis thaliana	33-37
20367466-4	2010	Here, we describe an enhancer of edr1 mutant, eed3, which forms spontaneous lesions in the absence of pathogen infection, constitutively expresses both SA- and methyl jasmonate (JA)-inducible defense genes, and is dwarfed.	jasmonic acid	167-176	glucan synthase-like 5	Arabidopsis thaliana	46-50
20367466-8	2010	Our data suggest that EDR1 and GSL5 negatively regulate SA and JA production or signaling by independent mechanisms and that negative regulation of defense signaling by GSL5 may be independent of callose production.	jasmonic acid	63-65	Protein kinase superfamily protein	Arabidopsis thaliana	22-26
20367466-8	2010	Our data suggest that EDR1 and GSL5 negatively regulate SA and JA production or signaling by independent mechanisms and that negative regulation of defense signaling by GSL5 may be independent of callose production.	jasmonic acid	63-65	glucan synthase-like 5	Arabidopsis thaliana	31-35
20040062-4	2010	The sib1 loss-of-function mutation compromises induction of some defence-related genes triggered by pathogen infection and the treatments with salicylic acid (SA) and jasmonic acid (JA), two key signalling molecules in the defence response.	jasmonic acid	182-184	sigma factor binding protein 1	Arabidopsis thaliana	4-8
20040062-5	2010	Conversely, constitutive over-expression of SIB1 causes the plants to hyper-activate defence-related genes following pathogen infection or the SA and JA treatments, leading to enhanced resistance to infection by P. syringae.	jasmonic acid	150-152	sigma factor binding protein 1	Arabidopsis thaliana	44-48
20040062-4	2010	The sib1 loss-of-function mutation compromises induction of some defence-related genes triggered by pathogen infection and the treatments with salicylic acid (SA) and jasmonic acid (JA), two key signalling molecules in the defence response.	jasmonic acid	167-180	sigma factor binding protein 1	Arabidopsis thaliana	4-8
20435902-4	2010	These mutants display exaggerated shade responses to low, but not high, R/FR ratio light, suggesting a role for JA in phytochrome A (phyA) signaling.	jasmonic acid	112-114	phytochrome A	Arabidopsis thaliana	118-131
20349083-10	2010	Surprisingly, despite of moderate JA- and wound-inducibility of ZmLOX4, the gene was not responsive to insect herbivory.	jasmonic acid	34-36	linoleate 9S-lipoxygenase4	Zea mays	64-70
20190093-6	2010	Lipoxygenase 2-RNA interference (RNAi) plants were generated, which constitutively produce jasmonic acid and 12-oxo-phytodienoic acid but do not exhibit accumulation during natural senescence or upon stress treatment.	jasmonic acid	91-104	lipoxygenase 1	Arabidopsis thaliana	0-12
20348210-3	2010	Here, we show that levels of 12-oxo-phytodienoic acid (OPDA) and jasmonic acid in three different DGL RNA interference lines and the dad1 mutant were similar to wild-type levels during the early wound response as well as after Pseudomonas infection.	jasmonic acid	65-78	alpha/beta-Hydrolases superfamily protein	Arabidopsis thaliana	98-101
20348210-8	2010	A quadruple mutant defective in four DAD1-like lipases displayed similar jasmonate levels as the mutant line of PLA-Igamma1 after wounding.	jasmonic acid	73-82	alpha/beta-Hydrolases superfamily protein	Arabidopsis thaliana	37-41
20349083-8	2010	While ZmLOX4 was only induced by jasmonic acid (JA), the transcripts of ZmLOX5 were increased in response to JA and salicylic acid treatments.	jasmonic acid	33-46	linoleate 9S-lipoxygenase4	Zea mays	6-12
20349083-8	2010	While ZmLOX4 was only induced by jasmonic acid (JA), the transcripts of ZmLOX5 were increased in response to JA and salicylic acid treatments.	jasmonic acid	48-50	linoleate 9S-lipoxygenase4	Zea mays	6-12
20349083-8	2010	While ZmLOX4 was only induced by jasmonic acid (JA), the transcripts of ZmLOX5 were increased in response to JA and salicylic acid treatments.	jasmonic acid	109-111	linoleate 9S-lipoxygenase5	Zea mays	72-78
20112908-5	2010	Because genes aos and fps encode the key enzymes in the defense signal pathways jasmonic acid and terpene signal pathways, respectively, it was deduced that PPO from aphid saliva, as the main elicitor, triggers an appropriate defense response in wheat through jasmonic acid and terpene signal pathways.	jasmonic acid	80-93	polyphenol oxidase I, chloroplastic	Triticum aestivum	157-160
20015061-3	2010	Here, we report that RIM1 functions as a transcriptional regulator of JA signaling and is degraded in response to JA treatment via a 26S proteasome-dependent pathway.	jasmonic acid	70-72	regulating synaptic membrane exocytosis 1	Homo sapiens	21-25
20015061-5	2010	The expression profiles of the mutants were significantly correlated with those of JA-treated wild-type plants without accumulation of endogenous JA, indicating that RIM1 functions as a component of JA signaling.	jasmonic acid	83-85	regulating synaptic membrane exocytosis 1	Homo sapiens	166-170
20015061-6	2010	The expression of genes encoding JA biosynthetic enzymes (lipoxygenase (LOX), allene oxide synthase 2 (AOS2) and OPDA reductase 7 (OPR7)) was up-regulated in the rim1 mutants under normal conditions, and a rapid and massive accumulation of endogenous JA was detected in the mutants after wounding.	jasmonic acid	33-35	regulating synaptic membrane exocytosis 1	Homo sapiens	162-166
20015061-6	2010	The expression of genes encoding JA biosynthetic enzymes (lipoxygenase (LOX), allene oxide synthase 2 (AOS2) and OPDA reductase 7 (OPR7)) was up-regulated in the rim1 mutants under normal conditions, and a rapid and massive accumulation of endogenous JA was detected in the mutants after wounding.	jasmonic acid	251-253	regulating synaptic membrane exocytosis 1	Homo sapiens	162-166
20037472-7	2010	Overall, in light of the adverse effects of CBF2 on ABA metabolism and responsiveness, on the one hand, and SA and JA metabolism and responsiveness, on the other hand, we conclude that overexpression of CBF2 suppresses hormone-induced leaf senescence by directly counteracting the hormone effects on leaf senescence and not by general suppression of their synthesis or signal transduction pathways.	jasmonic acid	115-117	C-repeat/DRE binding factor 2	Arabidopsis thaliana	203-207
20112908-5	2010	Because genes aos and fps encode the key enzymes in the defense signal pathways jasmonic acid and terpene signal pathways, respectively, it was deduced that PPO from aphid saliva, as the main elicitor, triggers an appropriate defense response in wheat through jasmonic acid and terpene signal pathways.	jasmonic acid	260-273	polyphenol oxidase I, chloroplastic	Triticum aestivum	157-160
19945769-5	2010	Similarly, loss of the epidermis-specific isoform VHA-E3, which we show here to be transcriptionally regulated by the phytohormone jasmonic acid, does not cause obvious phenotypic changes.	jasmonic acid	131-144	vacuolar H+-ATPase subunit E 	Arabidopsis thaliana	50-56
20018900-1	2010	A jasmonate-inducible lectin called Nicotiana tabacum agglutinin or NICTABA was found in tobacco (Nicotiana tabacum cv Samsun) leaves.	jasmonic acid	2-11	F-box protein PP2-B11-like	Nicotiana tabacum	68-75
19716624-5	2010	NPR1 also positively regulates SA tolerance and plays a role in SA-mediated negative regulation of jasmonic acid (JA) signaling.	jasmonic acid	99-112	regulatory protein (NPR1)	Arabidopsis thaliana	0-4
19906042-9	2010	We conclude a new physiological role for JA, namely acclimation of chloroplasts, and that light/cold stress-related JA biosynthesis is conditioned by the accumulation of plastoglobule-associated FIB1-2 proteins.	jasmonic acid	116-118	fibrillarin 1	Arabidopsis thaliana	195-199
20025249-3	2010	Mutants of Arabidopsis and tomato have helped to define the pathway for synthesis of jasmonoyl-isoleucine (JA-Ile), the active form of JA, and to identify the F-box protein COI1 as central regulatory unit.	jasmonic acid	107-109	coronatine-insensitive 1	Solanum lycopersicum	173-177
20025249-3	2010	Mutants of Arabidopsis and tomato have helped to define the pathway for synthesis of jasmonoyl-isoleucine (JA-Ile), the active form of JA, and to identify the F-box protein COI1 as central regulatory unit.	jasmonic acid	135-137	coronatine-insensitive 1	Solanum lycopersicum	173-177
20025249-5	2010	The emerging picture of JA perception and signaling cascade implies the SCF(COI1) complex operating as E3 ubiquitin ligase that upon binding of JA-Ile targets JAZ repressors for degradation by the 26S-proteasome pathway, thereby allowing the transcription factor MYC2 to activate gene expression.	jasmonic acid	24-26	RNI-like superfamily protein	Arabidopsis thaliana	76-80
20025249-5	2010	The emerging picture of JA perception and signaling cascade implies the SCF(COI1) complex operating as E3 ubiquitin ligase that upon binding of JA-Ile targets JAZ repressors for degradation by the 26S-proteasome pathway, thereby allowing the transcription factor MYC2 to activate gene expression.	jasmonic acid	24-26	Basic helix-loop-helix (bHLH) DNA-binding family protein	Arabidopsis thaliana	263-267
19716624-5	2010	NPR1 also positively regulates SA tolerance and plays a role in SA-mediated negative regulation of jasmonic acid (JA) signaling.	jasmonic acid	114-116	regulatory protein (NPR1)	Arabidopsis thaliana	0-4
20016937-6	2010	MeJA-induced activation of jasmonate-responsive genes such as JR2, VSP, LOXII, and AOS was attenuated in transgenic Arabidopsis plants overexpressing the gene (35S:AtMYB44), but significantly enhanced in atmyb44 knockout mutants.	jasmonic acid	27-36	Tyrosine transaminase family protein	Arabidopsis thaliana	62-65
20016937-6	2010	MeJA-induced activation of jasmonate-responsive genes such as JR2, VSP, LOXII, and AOS was attenuated in transgenic Arabidopsis plants overexpressing the gene (35S:AtMYB44), but significantly enhanced in atmyb44 knockout mutants.	jasmonic acid	27-36	myb domain protein r1	Arabidopsis thaliana	164-171
20016937-6	2010	MeJA-induced activation of jasmonate-responsive genes such as JR2, VSP, LOXII, and AOS was attenuated in transgenic Arabidopsis plants overexpressing the gene (35S:AtMYB44), but significantly enhanced in atmyb44 knockout mutants.	jasmonic acid	27-36	myb domain protein r1	Arabidopsis thaliana	204-211
20016937-8	2010	35S:AtMYB44 seedlings exhibited slightly elevated chlorophyll levels and less jasmonate- induced anthocyanin accumulation, demonstrating suppression of jasmonate-mediated responses and enhancement of ABA-mediated responses.	jasmonic acid	78-87	myb domain protein r1	Arabidopsis thaliana	4-11
20016937-8	2010	35S:AtMYB44 seedlings exhibited slightly elevated chlorophyll levels and less jasmonate- induced anthocyanin accumulation, demonstrating suppression of jasmonate-mediated responses and enhancement of ABA-mediated responses.	jasmonic acid	152-161	myb domain protein r1	Arabidopsis thaliana	4-11
19832945-2	2010	Here we show that the same transcription factors are essential for the activation of jasmonic acid (JA)- and ethylene (ET)-dependent defense mechanisms that counteract necrotrophic pathogens: the tga256 triple mutant is impaired in JA/ET-induced PDF1.2 and b-CHI expression, which correlates with a higher susceptibility against the necrotroph Botrytis cinerea.	jasmonic acid	85-98	protodermal factor 1	Arabidopsis thaliana	246-250
20007966-0	2010	Arabidopsis auxin response factor6 and 8 regulate jasmonic acid biosynthesis and floral organ development via repression of class 1 KNOX genes.	jasmonic acid	50-63	auxin response factor 6	Arabidopsis thaliana	12-34
20007966-2	2010	This phenotype is shared with the jasmonic acid (JA)-deficient mutant dad1, and, indeed, the JA level of arf6 arf8 flower buds was decreased.	jasmonic acid	34-47	alpha/beta-Hydrolases superfamily protein	Arabidopsis thaliana	70-74
20007966-2	2010	This phenotype is shared with the jasmonic acid (JA)-deficient mutant dad1, and, indeed, the JA level of arf6 arf8 flower buds was decreased.	jasmonic acid	34-47	auxin response factor 6	Arabidopsis thaliana	105-109
20007966-2	2010	This phenotype is shared with the jasmonic acid (JA)-deficient mutant dad1, and, indeed, the JA level of arf6 arf8 flower buds was decreased.	jasmonic acid	34-47	auxin response factor 8	Arabidopsis thaliana	110-114
20007966-2	2010	This phenotype is shared with the jasmonic acid (JA)-deficient mutant dad1, and, indeed, the JA level of arf6 arf8 flower buds was decreased.	jasmonic acid	49-51	alpha/beta-Hydrolases superfamily protein	Arabidopsis thaliana	70-74
20007966-2	2010	This phenotype is shared with the jasmonic acid (JA)-deficient mutant dad1, and, indeed, the JA level of arf6 arf8 flower buds was decreased.	jasmonic acid	49-51	auxin response factor 6	Arabidopsis thaliana	105-109
20007966-2	2010	This phenotype is shared with the jasmonic acid (JA)-deficient mutant dad1, and, indeed, the JA level of arf6 arf8 flower buds was decreased.	jasmonic acid	49-51	auxin response factor 8	Arabidopsis thaliana	110-114
20007966-2	2010	This phenotype is shared with the jasmonic acid (JA)-deficient mutant dad1, and, indeed, the JA level of arf6 arf8 flower buds was decreased.	jasmonic acid	93-95	alpha/beta-Hydrolases superfamily protein	Arabidopsis thaliana	70-74
20007966-2	2010	This phenotype is shared with the jasmonic acid (JA)-deficient mutant dad1, and, indeed, the JA level of arf6 arf8 flower buds was decreased.	jasmonic acid	93-95	auxin response factor 6	Arabidopsis thaliana	105-109
20007966-2	2010	This phenotype is shared with the jasmonic acid (JA)-deficient mutant dad1, and, indeed, the JA level of arf6 arf8 flower buds was decreased.	jasmonic acid	93-95	auxin response factor 8	Arabidopsis thaliana	110-114
20007966-3	2010	Among JA biosynthetic genes, the expression level of DAD1 (DEFECTIVE IN ANTHER DEHISCENCE1) was markedly decreased in the double mutant, suggesting that ARF6 and ARF8 are required for activation of DAD1 expression.	jasmonic acid	6-8	alpha/beta-Hydrolases superfamily protein	Arabidopsis thaliana	53-57
20007966-3	2010	Among JA biosynthetic genes, the expression level of DAD1 (DEFECTIVE IN ANTHER DEHISCENCE1) was markedly decreased in the double mutant, suggesting that ARF6 and ARF8 are required for activation of DAD1 expression.	jasmonic acid	6-8	alpha/beta-Hydrolases superfamily protein	Arabidopsis thaliana	59-90
20007966-3	2010	Among JA biosynthetic genes, the expression level of DAD1 (DEFECTIVE IN ANTHER DEHISCENCE1) was markedly decreased in the double mutant, suggesting that ARF6 and ARF8 are required for activation of DAD1 expression.	jasmonic acid	6-8	auxin response factor 6	Arabidopsis thaliana	153-157
20007966-3	2010	Among JA biosynthetic genes, the expression level of DAD1 (DEFECTIVE IN ANTHER DEHISCENCE1) was markedly decreased in the double mutant, suggesting that ARF6 and ARF8 are required for activation of DAD1 expression.	jasmonic acid	6-8	auxin response factor 8	Arabidopsis thaliana	162-166
20007966-3	2010	Among JA biosynthetic genes, the expression level of DAD1 (DEFECTIVE IN ANTHER DEHISCENCE1) was markedly decreased in the double mutant, suggesting that ARF6 and ARF8 are required for activation of DAD1 expression.	jasmonic acid	6-8	alpha/beta-Hydrolases superfamily protein	Arabidopsis thaliana	198-202
19880399-6	2009	Under water stress conditions, ABA- and water stress-dependent gene expression, including that of transcription factors, is globally and drastically impaired, and jasmonic acid (JA)-responsive and flowering genes are up-regulated in srk2d/e/i triple mutants, but not in other single and double mutants.	jasmonic acid	163-176	SNF1-related protein kinase 2.2	Arabidopsis thaliana	233-238
19888821-0	2009	Integration of ethylene and jasmonic acid signaling pathways in the expression of maize defense protein Mir1-CP.	jasmonic acid	28-41	maize insect resistance 1	Zea mays	104-108
20196819-9	2010	B27-positive patients were 134 (92.4%) in JAS group and 319 (88.6%) in AAS group.	jasmonic acid	42-45	melanocortin 2 receptor accessory protein	Homo sapiens	0-3
19846562-6	2009	JA accumulation in a lox2-1 mutant plant was initiated rapidly after wounding then slowed progressively compared with the wild type (WT).	jasmonic acid	0-2	lipoxygenase 2	Arabidopsis thaliana	21-25
19846562-10	2009	The major roles of LOX2 are to generate arabidopsides and the large levels of JA that accumulate proximal to the wound.	jasmonic acid	78-80	lipoxygenase 2	Arabidopsis thaliana	19-23
19880399-6	2009	Under water stress conditions, ABA- and water stress-dependent gene expression, including that of transcription factors, is globally and drastically impaired, and jasmonic acid (JA)-responsive and flowering genes are up-regulated in srk2d/e/i triple mutants, but not in other single and double mutants.	jasmonic acid	178-180	SNF1-related protein kinase 2.2	Arabidopsis thaliana	233-238
19703113-5	2009	We demonstrated that the rupture of foliar glandular trichomes by caterpillar or moth contact induced the expression of defense transcripts (e.g. proteinase inhibitor 2, or PIN2) regulated by jasmonic acid.	jasmonic acid	192-205	auxin efflux carrier component 2	Solanum lycopersicum	173-177
19765234-9	2009	Furthermore, exogenous treatments with jasmonate rescued petal phenotypes associated with loss of function of OPR3.	jasmonic acid	39-48	oxophytodienoate-reductase 3	Arabidopsis thaliana	110-114
19703113-8	2009	Using mutants, we showed that both jasmonic acid and trichomes were required for the contact-induced expression of PIN2.	jasmonic acid	35-48	auxin efflux carrier component 2	Solanum lycopersicum	115-119
19796781-8	2009	The bioactive jasmonate (+)-7-iso-JA-l-Ile promotes the interaction between the ubiquitin ligase complex SCF(COI1) and JAZ proteins, resulting in their degradation by the 26S proteasome, thereby liberating AtMYC2 from repression according to the prevailing model.	jasmonic acid	14-23	RNI-like superfamily protein	Arabidopsis thaliana	109-113
19663905-2	2009	The COI1 F-box and additional SCF modulators have long been known to have a crucial role in the JA-signalling pathway.	jasmonic acid	96-98	KIT ligand	Homo sapiens	30-33
19741050-2	2009	To dissect JA signal transduction, we isolated the partially suppressing coi1 (psc1) mutant, which partially suppressed coi1 insensitivity to JA inhibition of root growth.	jasmonic acid	11-13	RNI-like superfamily protein	Arabidopsis thaliana	73-77
19741050-2	2009	To dissect JA signal transduction, we isolated the partially suppressing coi1 (psc1) mutant, which partially suppressed coi1 insensitivity to JA inhibition of root growth.	jasmonic acid	11-13	Cytochrome P450 superfamily protein	Arabidopsis thaliana	79-83
19741050-2	2009	To dissect JA signal transduction, we isolated the partially suppressing coi1 (psc1) mutant, which partially suppressed coi1 insensitivity to JA inhibition of root growth.	jasmonic acid	142-144	RNI-like superfamily protein	Arabidopsis thaliana	73-77
19741050-2	2009	To dissect JA signal transduction, we isolated the partially suppressing coi1 (psc1) mutant, which partially suppressed coi1 insensitivity to JA inhibition of root growth.	jasmonic acid	142-144	Cytochrome P450 superfamily protein	Arabidopsis thaliana	79-83
19741050-3	2009	The psc1 mutant partially restored JA sensitivity in coi1-2 background and displayed JA hypersensitivity in wild-type COI1 background.	jasmonic acid	35-37	Cytochrome P450 superfamily protein	Arabidopsis thaliana	4-8
19741050-3	2009	The psc1 mutant partially restored JA sensitivity in coi1-2 background and displayed JA hypersensitivity in wild-type COI1 background.	jasmonic acid	85-87	Cytochrome P450 superfamily protein	Arabidopsis thaliana	4-8
19741050-5	2009	Physiological analysis showed that an application of exogenous BR eliminated the partial restoration of JA sensitivity by psc1 in coi1-2 background and the JA hypersensitivity of psc1 in wild-type COI1 background.	jasmonic acid	104-106	Cytochrome P450 superfamily protein	Arabidopsis thaliana	122-126
19741050-5	2009	Physiological analysis showed that an application of exogenous BR eliminated the partial restoration of JA sensitivity by psc1 in coi1-2 background and the JA hypersensitivity of psc1 in wild-type COI1 background.	jasmonic acid	156-158	Cytochrome P450 superfamily protein	Arabidopsis thaliana	179-183
19741050-7	2009	In addition, the expression of DWF4 was inhibited by JA, and this inhibition was dependent on COI1.	jasmonic acid	53-55	Cytochrome P450 superfamily protein	Arabidopsis thaliana	31-35
19741050-8	2009	These results indicate that (1) BR is involved in JA signaling and negatively regulates JA inhibition of root growth, and (2) the DWF4 is down-regulated by JA and is located downstream of COI1 in the JA-signaling pathway.	jasmonic acid	50-52	Cytochrome P450 superfamily protein	Arabidopsis thaliana	130-134
19741050-8	2009	These results indicate that (1) BR is involved in JA signaling and negatively regulates JA inhibition of root growth, and (2) the DWF4 is down-regulated by JA and is located downstream of COI1 in the JA-signaling pathway.	jasmonic acid	88-90	Cytochrome P450 superfamily protein	Arabidopsis thaliana	130-134
19741050-8	2009	These results indicate that (1) BR is involved in JA signaling and negatively regulates JA inhibition of root growth, and (2) the DWF4 is down-regulated by JA and is located downstream of COI1 in the JA-signaling pathway.	jasmonic acid	88-90	Cytochrome P450 superfamily protein	Arabidopsis thaliana	130-134
19741050-8	2009	These results indicate that (1) BR is involved in JA signaling and negatively regulates JA inhibition of root growth, and (2) the DWF4 is down-regulated by JA and is located downstream of COI1 in the JA-signaling pathway.	jasmonic acid	88-90	Cytochrome P450 superfamily protein	Arabidopsis thaliana	130-134
19796781-8	2009	The bioactive jasmonate (+)-7-iso-JA-l-Ile promotes the interaction between the ubiquitin ligase complex SCF(COI1) and JAZ proteins, resulting in their degradation by the 26S proteasome, thereby liberating AtMYC2 from repression according to the prevailing model.	jasmonic acid	14-23	Basic helix-loop-helix (bHLH) DNA-binding family protein	Arabidopsis thaliana	206-212
19625635-4	2009	Disease responses in rst1 correlate with higher levels of jasmonic acid (JA) and increased basal and B. cinerea-induced expression of the plant defensin PDF1.2 gene but reduced E. cichoracearum-inducible salicylic acid levels and expression of pathogenesis-related genes PR1 and PR2.	jasmonic acid	58-71	ARM repeat superfamily protein	Arabidopsis thaliana	21-25
19625635-4	2009	Disease responses in rst1 correlate with higher levels of jasmonic acid (JA) and increased basal and B. cinerea-induced expression of the plant defensin PDF1.2 gene but reduced E. cichoracearum-inducible salicylic acid levels and expression of pathogenesis-related genes PR1 and PR2.	jasmonic acid	73-75	ARM repeat superfamily protein	Arabidopsis thaliana	21-25
19625635-9	2009	The rst1 mutation thus defines a unique combination of disease responses to biotrophic and necrotrophic fungi in that it antagonizes salicylic acid-dependent defense and enhances JA-mediated defense through a mechanism that also controls cuticle synthesis.	jasmonic acid	179-181	ARM repeat superfamily protein	Arabidopsis thaliana	4-8
19220780-3	2009	Arabidopsis (Arabidopsis thaliana) AtPLDalpha1 has been proposed to be activated in intact cells, and the phosphatidic acid (PA) it produces to serve as a precursor for jasmonic acid (JA) synthesis and to be required for wounding-induced gene expression.	jasmonic acid	169-182	phospholipase D alpha 1	Arabidopsis thaliana	35-46
19473329-6	2009	Wound-induced systemic production of JA-Ile required the JA biosynthetic enzyme 12-oxo-phytodienoic acid (OPDA) reductase 3 (OPR3) in undamaged responding leaves, but not in wounded leaves, and was largely dependent on the JA-conjugating enzyme JAR1.	jasmonic acid	37-39	oxophytodienoate-reductase 3	Arabidopsis thaliana	125-129
19473329-6	2009	Wound-induced systemic production of JA-Ile required the JA biosynthetic enzyme 12-oxo-phytodienoic acid (OPDA) reductase 3 (OPR3) in undamaged responding leaves, but not in wounded leaves, and was largely dependent on the JA-conjugating enzyme JAR1.	jasmonic acid	37-39	Auxin-responsive GH3 family protein	Arabidopsis thaliana	245-249
19473329-6	2009	Wound-induced systemic production of JA-Ile required the JA biosynthetic enzyme 12-oxo-phytodienoic acid (OPDA) reductase 3 (OPR3) in undamaged responding leaves, but not in wounded leaves, and was largely dependent on the JA-conjugating enzyme JAR1.	jasmonic acid	57-59	oxophytodienoate-reductase 3	Arabidopsis thaliana	125-129
19473329-6	2009	Wound-induced systemic production of JA-Ile required the JA biosynthetic enzyme 12-oxo-phytodienoic acid (OPDA) reductase 3 (OPR3) in undamaged responding leaves, but not in wounded leaves, and was largely dependent on the JA-conjugating enzyme JAR1.	jasmonic acid	57-59	Auxin-responsive GH3 family protein	Arabidopsis thaliana	245-249
19473329-8	2009	These results are consistent with a model in which a rapidly transmitted wound signal triggers the systemic synthesis of JA, which, upon conversion to JA-Ile, activates the expression of early response genes by the SCF(COI1)/JAZ pathway.	jasmonic acid	121-123	RNI-like superfamily protein	Arabidopsis thaliana	219-223
19575013-5	2009	Here, we show that expression of JAZ1/TIFY10A is not solely inducible by JA, but that it is also an early auxin-responsive gene.	jasmonic acid	33-35	jasmonate-zim-domain protein 1	Arabidopsis thaliana	38-45
19575013-6	2009	Furthermore, we could show that the auxin-inducible expression of JAZ1/TIFY10A is independent of the JA signalling pathway but is controlled by the auxin/indole-3-acetic acid-auxin response transcription factor signalling pathway.	jasmonic acid	66-68	jasmonate-zim-domain protein 1	Arabidopsis thaliana	71-78
19473329-2	2009	The perception of bioactive JAs by the F-box protein COI1 triggers the SCF(COI1)/ubiquitin-dependent degradation of JASMONATE ZIM-DOMAIN (JAZ) proteins that repress the expression of JA-response genes.	jasmonic acid	28-31	RNI-like superfamily protein	Arabidopsis thaliana	53-57
19473329-2	2009	The perception of bioactive JAs by the F-box protein COI1 triggers the SCF(COI1)/ubiquitin-dependent degradation of JASMONATE ZIM-DOMAIN (JAZ) proteins that repress the expression of JA-response genes.	jasmonic acid	28-31	RNI-like superfamily protein	Arabidopsis thaliana	75-79
19947207-3	2009	After treated with JA for 3-12 h, the gene expression of Bx9, PAL, PR-2a, MPI and FPS in treated roots was directly induced, resulting in an increase of DIMBOA content and a decrease of total phenol content, with the strongest induction effect detected at 100 micromol x L(-1) of JA, followed by at 50 micromol x L(-1), and at 10 micromol x L(-1).	jasmonic acid	19-21	DIMBOA UDP-glucosyltransferase BX9	Zea mays	57-60
19947207-3	2009	After treated with JA for 3-12 h, the gene expression of Bx9, PAL, PR-2a, MPI and FPS in treated roots was directly induced, resulting in an increase of DIMBOA content and a decrease of total phenol content, with the strongest induction effect detected at 100 micromol x L(-1) of JA, followed by at 50 micromol x L(-1), and at 10 micromol x L(-1).	jasmonic acid	280-282	DIMBOA UDP-glucosyltransferase BX9	Zea mays	57-60
19947207-6	2009	After underground treatment with 50 micromol x L(-1) of JA for 3 h, the gene expression of Bx9 and FPS in non-treated leaves was induced, which caused a consequent increase of leaf DIMBOA content.	jasmonic acid	56-58	DIMBOA UDP-glucosyltransferase BX9	Zea mays	91-94
19947207-7	2009	Within 6-24 h of JA treatment, the gene expression of Bx9, PAL, PR-1, MPI and TPS in leaves was enhanced, while the leaf DIMBOA and total phenol contents were declined.	jasmonic acid	17-19	DIMBOA UDP-glucosyltransferase BX9	Zea mays	54-57
19947207-7	2009	Within 6-24 h of JA treatment, the gene expression of Bx9, PAL, PR-1, MPI and TPS in leaves was enhanced, while the leaf DIMBOA and total phenol contents were declined.	jasmonic acid	17-19	pathogenesis related protein 4	Zea mays	64-68
19523101-0	2009	Molecular diversity and gene expression of cotton ERF transcription factors reveal that group IXa members are responsive to jasmonate, ethylene and Xanthomonas.	jasmonic acid	124-133	ethylene-responsive transcription factor 4	Gossypium hirsutum	50-53
19523101-4	2009	Based on in silico studies, we predict that group IX ERF genes in cotton are involved in jasmonate (JA), ethylene (ET) and pathogen responses.	jasmonic acid	100-102	ethylene-responsive transcription factor 4	Gossypium hirsutum	53-56
19523101-8	2009	Furthermore, the expression of several ERF genes of group IXa was induced synergistically by JA in combination with ET, suggesting that the encoded ERF proteins may play key roles in the integration of both signals to activate JA- and ET-dependent responses.	jasmonic acid	93-95	ethylene-responsive transcription factor 4	Gossypium hirsutum	39-42
19523101-8	2009	Furthermore, the expression of several ERF genes of group IXa was induced synergistically by JA in combination with ET, suggesting that the encoded ERF proteins may play key roles in the integration of both signals to activate JA- and ET-dependent responses.	jasmonic acid	93-95	ethylene-responsive transcription factor 4	Gossypium hirsutum	148-151
19220780-3	2009	Arabidopsis (Arabidopsis thaliana) AtPLDalpha1 has been proposed to be activated in intact cells, and the phosphatidic acid (PA) it produces to serve as a precursor for jasmonic acid (JA) synthesis and to be required for wounding-induced gene expression.	jasmonic acid	184-186	phospholipase D alpha 1	Arabidopsis thaliana	35-46
19539247-0	2009	Transcriptional regulation of wheat VER2 promoter in rice in response to abscisic acid, jasmonate, and light.	jasmonic acid	88-97	ver2	Triticum aestivum	36-40
19458116-7	2009	The TIR1 auxin receptor is required for activity because roots of tir1-1 grew only approximately 60% of wild-type length on IAA plus JA-Trp, even though tir1-1 is auxin resistant.	jasmonic acid	133-135	F-box/RNI-like superfamily protein	Arabidopsis thaliana	4-8
19458116-7	2009	The TIR1 auxin receptor is required for activity because roots of tir1-1 grew only approximately 60% of wild-type length on IAA plus JA-Trp, even though tir1-1 is auxin resistant.	jasmonic acid	133-135	F-box/RNI-like superfamily protein	Arabidopsis thaliana	66-72
19309455-3	2009	Upon hormone perception, JAZ repressors are degraded by the proteasome releasing MYC2 and allowing the activation of JA responses.	jasmonic acid	25-27	Basic helix-loop-helix (bHLH) DNA-binding family protein	Arabidopsis thaliana	81-85
19309455-9	2009	We also provide evidence that the Jas motif mediates the hormone-dependent interaction between Arabidopsis JAZ3 and COI1, and further confirm that the Jas motif is required and sufficient for Arabidopsis JAZ3-MYC2 interaction.	jasmonic acid	34-37	jasmonate-zim-domain protein 3	Arabidopsis thaliana	107-111
19309455-9	2009	We also provide evidence that the Jas motif mediates the hormone-dependent interaction between Arabidopsis JAZ3 and COI1, and further confirm that the Jas motif is required and sufficient for Arabidopsis JAZ3-MYC2 interaction.	jasmonic acid	34-37	RNI-like superfamily protein	Arabidopsis thaliana	116-120
19309455-9	2009	We also provide evidence that the Jas motif mediates the hormone-dependent interaction between Arabidopsis JAZ3 and COI1, and further confirm that the Jas motif is required and sufficient for Arabidopsis JAZ3-MYC2 interaction.	jasmonic acid	34-37	jasmonate-zim-domain protein 3	Arabidopsis thaliana	204-208
19309455-9	2009	We also provide evidence that the Jas motif mediates the hormone-dependent interaction between Arabidopsis JAZ3 and COI1, and further confirm that the Jas motif is required and sufficient for Arabidopsis JAZ3-MYC2 interaction.	jasmonic acid	34-37	Basic helix-loop-helix (bHLH) DNA-binding family protein	Arabidopsis thaliana	209-213
19309455-9	2009	We also provide evidence that the Jas motif mediates the hormone-dependent interaction between Arabidopsis JAZ3 and COI1, and further confirm that the Jas motif is required and sufficient for Arabidopsis JAZ3-MYC2 interaction.	jasmonic acid	151-154	jasmonate-zim-domain protein 3	Arabidopsis thaliana	107-111
19309455-9	2009	We also provide evidence that the Jas motif mediates the hormone-dependent interaction between Arabidopsis JAZ3 and COI1, and further confirm that the Jas motif is required and sufficient for Arabidopsis JAZ3-MYC2 interaction.	jasmonic acid	151-154	RNI-like superfamily protein	Arabidopsis thaliana	116-120
19309455-9	2009	We also provide evidence that the Jas motif mediates the hormone-dependent interaction between Arabidopsis JAZ3 and COI1, and further confirm that the Jas motif is required and sufficient for Arabidopsis JAZ3-MYC2 interaction.	jasmonic acid	151-154	jasmonate-zim-domain protein 3	Arabidopsis thaliana	204-208
19309455-9	2009	We also provide evidence that the Jas motif mediates the hormone-dependent interaction between Arabidopsis JAZ3 and COI1, and further confirm that the Jas motif is required and sufficient for Arabidopsis JAZ3-MYC2 interaction.	jasmonic acid	151-154	Basic helix-loop-helix (bHLH) DNA-binding family protein	Arabidopsis thaliana	209-213
19176718-3	2009	In Arabidopsis (Arabidopsis thaliana), NONEXPRESSOR OF PATHOGENESIS-RELATED GENES1 (NPR1) was demonstrated to be required for SA-mediated suppression of JA-dependent defenses.	jasmonic acid	153-155	regulatory protein (NPR1)	Arabidopsis thaliana	39-82
19435934-3	2009	Here, we analyze the interaction of jasmonate with auxin to regulate lateral root (LR) formation through characterization of an Arabidopsis thaliana mutant, jasmonate-induced defective lateral root1 (jdl1/asa1-1).	jasmonic acid	36-45	anthranilate synthase alpha subunit 1	Arabidopsis thaliana	200-204
19435934-3	2009	Here, we analyze the interaction of jasmonate with auxin to regulate lateral root (LR) formation through characterization of an Arabidopsis thaliana mutant, jasmonate-induced defective lateral root1 (jdl1/asa1-1).	jasmonic acid	36-45	anthranilate synthase alpha subunit 1	Arabidopsis thaliana	205-209
19435934-3	2009	Here, we analyze the interaction of jasmonate with auxin to regulate lateral root (LR) formation through characterization of an Arabidopsis thaliana mutant, jasmonate-induced defective lateral root1 (jdl1/asa1-1).	jasmonic acid	157-166	anthranilate synthase alpha subunit 1	Arabidopsis thaliana	200-204
19435934-3	2009	Here, we analyze the interaction of jasmonate with auxin to regulate lateral root (LR) formation through characterization of an Arabidopsis thaliana mutant, jasmonate-induced defective lateral root1 (jdl1/asa1-1).	jasmonic acid	157-166	anthranilate synthase alpha subunit 1	Arabidopsis thaliana	205-209
19435934-4	2009	We demonstrate that, whereas exogenous jasmonate promotes LR formation in wild-type plants, it represses LR formation in jdl1/asa1-1.	jasmonic acid	39-48	anthranilate synthase alpha subunit 1	Arabidopsis thaliana	121-125
19435934-4	2009	We demonstrate that, whereas exogenous jasmonate promotes LR formation in wild-type plants, it represses LR formation in jdl1/asa1-1.	jasmonic acid	39-48	anthranilate synthase alpha subunit 1	Arabidopsis thaliana	126-130
19435934-5	2009	JDL1 encodes the auxin biosynthetic gene ANTHRANILATE SYNTHASE alpha1 (ASA1), which is required for jasmonate-induced auxin biosynthesis.	jasmonic acid	100-109	anthranilate synthase alpha subunit 1	Arabidopsis thaliana	0-4
19435934-5	2009	JDL1 encodes the auxin biosynthetic gene ANTHRANILATE SYNTHASE alpha1 (ASA1), which is required for jasmonate-induced auxin biosynthesis.	jasmonic acid	100-109	anthranilate synthase alpha subunit 1	Arabidopsis thaliana	41-69
19435934-5	2009	JDL1 encodes the auxin biosynthetic gene ANTHRANILATE SYNTHASE alpha1 (ASA1), which is required for jasmonate-induced auxin biosynthesis.	jasmonic acid	100-109	anthranilate synthase alpha subunit 1	Arabidopsis thaliana	71-75
19435934-6	2009	Jasmonate elevates local auxin accumulation in the basal meristem of wild-type roots but reduces local auxin accumulation in the basal meristem of mutant roots, suggesting that, in addition to activating ASA1-dependent auxin biosynthesis, jasmonate also affects auxin transport.	jasmonic acid	0-9	anthranilate synthase alpha subunit 1	Arabidopsis thaliana	204-208
19435934-8	2009	We further provide evidence showing that the action mechanism of jasmonate to regulate LR formation through ASA1 differs from that of ethylene.	jasmonic acid	65-74	anthranilate synthase alpha subunit 1	Arabidopsis thaliana	108-112
19220788-1	2009	Although defense responses mediated by the plant oxylipin jasmonic acid (JA) are often necessary for resistance against pathogens with necrotrophic lifestyles, in this report we demonstrate that jasmonate signaling mediated through COI1 in Arabidopsis thaliana is responsible for susceptibility to wilt disease caused by the root-infecting fungal pathogen Fusarium oxysporum.	jasmonic acid	58-71	RNI-like superfamily protein	Arabidopsis thaliana	232-236
19220788-1	2009	Although defense responses mediated by the plant oxylipin jasmonic acid (JA) are often necessary for resistance against pathogens with necrotrophic lifestyles, in this report we demonstrate that jasmonate signaling mediated through COI1 in Arabidopsis thaliana is responsible for susceptibility to wilt disease caused by the root-infecting fungal pathogen Fusarium oxysporum.	jasmonic acid	73-75	RNI-like superfamily protein	Arabidopsis thaliana	232-236
19220788-2	2009	Despite compromised JA-dependent defense responses, the JA perception mutant coronatine insensitive 1 (coi1), but not JA biosynthesis mutants, exhibited a high level of resistance to wilt disease caused by F. oxysporum.	jasmonic acid	56-58	RNI-like superfamily protein	Arabidopsis thaliana	103-107
19220788-2	2009	Despite compromised JA-dependent defense responses, the JA perception mutant coronatine insensitive 1 (coi1), but not JA biosynthesis mutants, exhibited a high level of resistance to wilt disease caused by F. oxysporum.	jasmonic acid	56-58	RNI-like superfamily protein	Arabidopsis thaliana	103-107
19376935-0	2009	Leucine aminopeptidase regulates defense and wound signaling in tomato downstream of jasmonic acid.	jasmonic acid	85-98	leucine aminopeptidase 1, chloroplastic	Solanum lycopersicum	0-22
19376935-11	2009	Collectively, these data suggested that LAP-A has a role in modulating essential defenses against herbivores by promoting late wound responses and acting downstream of JA biosynthesis and perception.	jasmonic acid	168-170	leucine aminopeptidase 1, chloroplastic	Solanum lycopersicum	40-43
19176718-3	2009	In Arabidopsis (Arabidopsis thaliana), NONEXPRESSOR OF PATHOGENESIS-RELATED GENES1 (NPR1) was demonstrated to be required for SA-mediated suppression of JA-dependent defenses.	jasmonic acid	153-155	regulatory protein (NPR1)	Arabidopsis thaliana	84-88
19176718-8	2009	Furthermore, JA-dependent resistance against biotic attackers was antagonized by SA in an NPR1-dependent fashion only when the plant-attacker combination did not result in the production of high levels of endogenous ET.	jasmonic acid	13-15	regulatory protein (NPR1)	Arabidopsis thaliana	90-94
19176718-10	2009	Our results suggest a model in which ET modulates the NPR1 dependency of SA-JA antagonism, possibly to compensate for enhanced allocation of NPR1 to function in SA-dependent activation of PR genes.	jasmonic acid	76-78	regulatory protein (NPR1)	Arabidopsis thaliana	54-58
19234066-0	2009	Jasmonic acid control of GLABRA3 links inducible defense and trichome patterning in Arabidopsis.	jasmonic acid	0-13	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	Arabidopsis thaliana	25-32
19234066-8	2009	The expression of GL3 was enhanced by JA treatment prior to trichome initiation.	jasmonic acid	38-40	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	Arabidopsis thaliana	18-21
19234066-9	2009	Genetic analysis of multiple trichome mutants shows that GL3, in concert with the R2R3-Myb transcription factor GLABRA1 (GL1), promotes trichome fate in response to JA in a dosage-dependent manner.	jasmonic acid	165-167	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	Arabidopsis thaliana	57-60
19234066-9	2009	Genetic analysis of multiple trichome mutants shows that GL3, in concert with the R2R3-Myb transcription factor GLABRA1 (GL1), promotes trichome fate in response to JA in a dosage-dependent manner.	jasmonic acid	165-167	myb domain protein 0	Arabidopsis thaliana	112-119
19234066-9	2009	Genetic analysis of multiple trichome mutants shows that GL3, in concert with the R2R3-Myb transcription factor GLABRA1 (GL1), promotes trichome fate in response to JA in a dosage-dependent manner.	jasmonic acid	165-167	myb domain protein 0	Arabidopsis thaliana	121-124
19146828-12	2009	GLIP2 transcript levels were elevated by treatment with salicylic acid, jasmonic acid and ethylene.	jasmonic acid	72-85	GDSL-motif lipase 2	Arabidopsis thaliana	0-5
19325888-9	2009	Further genetic and molecular studies demonstrate that GA suppresses DELLAs to mobilize the expression of the key JA biosynthesis gene DAD1, and this is consistent with the observation that the JA content in the young flower buds of the GA-deficient quadruple mutant ga1-3 gai-t6 rga-t2 rgl1-1 is much lower than that in the WT.	jasmonic acid	114-116	alpha/beta-Hydrolases superfamily protein	Arabidopsis thaliana	135-139
19325888-9	2009	Further genetic and molecular studies demonstrate that GA suppresses DELLAs to mobilize the expression of the key JA biosynthesis gene DAD1, and this is consistent with the observation that the JA content in the young flower buds of the GA-deficient quadruple mutant ga1-3 gai-t6 rga-t2 rgl1-1 is much lower than that in the WT.	jasmonic acid	194-196	alpha/beta-Hydrolases superfamily protein	Arabidopsis thaliana	135-139
19325888-10	2009	We conclude that GA promotes JA biosynthesis to control the expression of MYB21, MYB24, and MYB57.	jasmonic acid	29-31	myb domain protein 21	Arabidopsis thaliana	74-79
19325888-10	2009	We conclude that GA promotes JA biosynthesis to control the expression of MYB21, MYB24, and MYB57.	jasmonic acid	29-31	myb domain protein 24	Arabidopsis thaliana	81-86
19325888-10	2009	We conclude that GA promotes JA biosynthesis to control the expression of MYB21, MYB24, and MYB57.	jasmonic acid	29-31	myb domain protein 57	Arabidopsis thaliana	92-97
19245318-7	2009	Our results support the idea that MPK4 positively regulates jasmonic acid-mediated defense response, which might play an important role in resistance to S. sclerotiorum in oilseed rape.	jasmonic acid	60-73	MAP kinase 4	Arabidopsis thaliana	34-38
18850307-1	2009	Allene oxide cyclase (AOC, E 5.3.99.6) is an essential enzyme in jasmonate (JA) biosynthetic pathway.	jasmonic acid	65-74	allene oxide cyclase 4, chloroplastic-like	Nicotiana tabacum	0-20
18850307-1	2009	Allene oxide cyclase (AOC, E 5.3.99.6) is an essential enzyme in jasmonate (JA) biosynthetic pathway.	jasmonic acid	65-74	allene oxide cyclase 4, chloroplastic-like	Nicotiana tabacum	22-25
18850307-1	2009	Allene oxide cyclase (AOC, E 5.3.99.6) is an essential enzyme in jasmonate (JA) biosynthetic pathway.	jasmonic acid	76-78	allene oxide cyclase 4, chloroplastic-like	Nicotiana tabacum	0-20
18850307-1	2009	Allene oxide cyclase (AOC, E 5.3.99.6) is an essential enzyme in jasmonate (JA) biosynthetic pathway.	jasmonic acid	76-78	allene oxide cyclase 4, chloroplastic-like	Nicotiana tabacum	22-25
19098091-5	2009	In contrast, overexpression of NtMATE1 in cultured tobacco cells induced strong acidification of the cytoplasm after jasmonate elicitation or after the addition of nicotine under nonelicited conditions.	jasmonic acid	117-126	protein DETOXIFICATION 40-like	Nicotiana tabacum	31-38
18674644-5	2008	mRNA expression of the AtDabb1 gene was induced by pathogen-related signaling molecules including salicylic acid and jasmonic acid.	jasmonic acid	117-130	dimeric A/B barrel domainS-protein 1	Arabidopsis thaliana	23-30
19131630-0	2009	tasselseed1 is a lipoxygenase affecting jasmonic acid signaling in sex determination of maize.	jasmonic acid	40-53	linoleate 13S-lipoxygenase8	Zea mays	0-11
19131630-0	2009	tasselseed1 is a lipoxygenase affecting jasmonic acid signaling in sex determination of maize.	jasmonic acid	40-53	linoleate 9S-lipoxygenase4	Zea mays	17-29
19131630-4	2009	The TS1 protein encodes a plastid-targeted lipoxygenase with predicted 13-lipoxygenase specificity, which suggests that TS1 may be involved in the biosynthesis of the plant hormone jasmonic acid.	jasmonic acid	181-194	linoleate 13S-lipoxygenase8	Zea mays	4-7
19131630-4	2009	The TS1 protein encodes a plastid-targeted lipoxygenase with predicted 13-lipoxygenase specificity, which suggests that TS1 may be involved in the biosynthesis of the plant hormone jasmonic acid.	jasmonic acid	181-194	linoleate 9S-lipoxygenase4	Zea mays	43-55
19131630-4	2009	The TS1 protein encodes a plastid-targeted lipoxygenase with predicted 13-lipoxygenase specificity, which suggests that TS1 may be involved in the biosynthesis of the plant hormone jasmonic acid.	jasmonic acid	181-194	linoleate 9S-lipoxygenase4	Zea mays	74-86
19131630-4	2009	The TS1 protein encodes a plastid-targeted lipoxygenase with predicted 13-lipoxygenase specificity, which suggests that TS1 may be involved in the biosynthesis of the plant hormone jasmonic acid.	jasmonic acid	181-194	linoleate 13S-lipoxygenase8	Zea mays	120-123
19131630-5	2009	In the absence of a functional ts1 gene, lipoxygenase activity was missing and endogenous jasmonic acid concentrations were reduced in developing inflorescences.	jasmonic acid	90-103	linoleate 13S-lipoxygenase8	Zea mays	31-34
19131630-6	2009	Application of jasmonic acid to developing inflorescences rescued stamen development in mutant ts1 and ts2 inflorescences, revealing a role for jasmonic acid in male flower development in maize.	jasmonic acid	15-28	linoleate 13S-lipoxygenase8	Zea mays	95-98
19131630-6	2009	Application of jasmonic acid to developing inflorescences rescued stamen development in mutant ts1 and ts2 inflorescences, revealing a role for jasmonic acid in male flower development in maize.	jasmonic acid	15-28	sex determination protein tasselseed-2	Zea mays	103-106
19131630-6	2009	Application of jasmonic acid to developing inflorescences rescued stamen development in mutant ts1 and ts2 inflorescences, revealing a role for jasmonic acid in male flower development in maize.	jasmonic acid	144-157	linoleate 13S-lipoxygenase8	Zea mays	95-98
18764923-3	2009	In coordination with other JA-biosynthetic genes, expression of FAD7 is induced locally by wounding.	jasmonic acid	27-29	fatty acid desaturase 7	Arabidopsis thaliana	64-68
18764923-6	2009	Reciprocal crossing experiments revealed that the induction of FAD7 expression depends largely on JA biosynthesis and the SCF(COI1)-mediated signalling mechanism, whereas JA alone is insufficient for its maximal induction.	jasmonic acid	98-100	fatty acid desaturase 7	Arabidopsis thaliana	63-67
19596700-5	2009	It was found that the F-box protein COI1 was required for JA-specific induced expression of the "late" anthocyanin biosynthetic genes DFR, LDOX, and UF3GT.	jasmonic acid	58-60	RNI-like superfamily protein	Arabidopsis thaliana	36-40
19596700-5	2009	It was found that the F-box protein COI1 was required for JA-specific induced expression of the "late" anthocyanin biosynthetic genes DFR, LDOX, and UF3GT.	jasmonic acid	58-60	UDP-glucose:flavonoid 3-o-glucosyltransferase	Arabidopsis thaliana	149-154
19596700-7	2009	It is speculated that COI1 regulates the expression of the transcription factors, including PAP1, PAP2, and GL3, which mediates the "late" anthocyanin biosynthetic genes DFR, LDOX, and UF3GT, thereby modulating JA-induced anthocyanin biosynthesis in Arabidopsis.	jasmonic acid	211-213	RNI-like superfamily protein	Arabidopsis thaliana	22-26
19596700-7	2009	It is speculated that COI1 regulates the expression of the transcription factors, including PAP1, PAP2, and GL3, which mediates the "late" anthocyanin biosynthetic genes DFR, LDOX, and UF3GT, thereby modulating JA-induced anthocyanin biosynthesis in Arabidopsis.	jasmonic acid	211-213	phosphatidic acid phosphatase 1	Arabidopsis thaliana	92-96
19596700-7	2009	It is speculated that COI1 regulates the expression of the transcription factors, including PAP1, PAP2, and GL3, which mediates the "late" anthocyanin biosynthetic genes DFR, LDOX, and UF3GT, thereby modulating JA-induced anthocyanin biosynthesis in Arabidopsis.	jasmonic acid	211-213	Purple acid phosphatases superfamily protein	Arabidopsis thaliana	98-102
19596700-7	2009	It is speculated that COI1 regulates the expression of the transcription factors, including PAP1, PAP2, and GL3, which mediates the "late" anthocyanin biosynthetic genes DFR, LDOX, and UF3GT, thereby modulating JA-induced anthocyanin biosynthesis in Arabidopsis.	jasmonic acid	211-213	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	Arabidopsis thaliana	108-111
19596700-7	2009	It is speculated that COI1 regulates the expression of the transcription factors, including PAP1, PAP2, and GL3, which mediates the "late" anthocyanin biosynthetic genes DFR, LDOX, and UF3GT, thereby modulating JA-induced anthocyanin biosynthesis in Arabidopsis.	jasmonic acid	211-213	UDP-glucose:flavonoid 3-o-glucosyltransferase	Arabidopsis thaliana	185-190
19151223-2	2009	Perception of bioactive JAs by the F-box protein CORONATINE INSENSITIVE1 (COI1) causes degradation of JAZs via the ubiquitin-proteasome pathway, which in turn activates the expression of genes involved in plant growth, development, and defense.	jasmonic acid	24-27	RNI-like superfamily protein	Arabidopsis thaliana	74-78
19151223-5	2009	We have also identified an alternatively spliced form (JAZ10.4) of JAZ10 that lacks the Jas domain and, as a consequence, is highly resistant to JA-induced degradation.	jasmonic acid	55-57	jasmonate-zim-domain protein 10	Arabidopsis thaliana	67-72
19151223-6	2009	Strong JA-insensitive phenotypes conferred by overexpression of JAZ10.4 were suppressed by mutations in the TIFY motif that block JAZ10.4-JAZ interactions.	jasmonic acid	7-9	jasmonate-zim-domain protein 10	Arabidopsis thaliana	64-69
19151223-6	2009	Strong JA-insensitive phenotypes conferred by overexpression of JAZ10.4 were suppressed by mutations in the TIFY motif that block JAZ10.4-JAZ interactions.	jasmonic acid	7-9	jasmonate-zim-domain protein 10	Arabidopsis thaliana	130-135
19168715-9	2009	We also show that jasmonic acid and ethylene act together with abscisic acid to regulate floral organ abscission, in part by promoting QRT2 expression.	jasmonic acid	18-31	Pectin lyase-like superfamily protein	Arabidopsis thaliana	135-139
18793148-9	2008	Genome analyses in Arabidopsis and rice revealed the presence of F-box proteins with a C-terminal lectin-related domain homologous with Nictaba, a jasmonate-inducible lectin from tobacco that was shown to interact with the core structure of high-mannose and complex N-glycans.	jasmonic acid	147-156	F-box protein PP2-B11-like	Nicotiana tabacum	98-104
18790995-2	2008	We have previously shown that, in Arabidopsis (Arabidopsis thaliana), OGs induce the expression of PHYTOALEXIN DEFICIENT3 (PAD3) and increase resistance to the necrotrophic fungal pathogen Botrytis cinerea independently of signaling pathways mediated by jasmonate, salicylic acid, and ethylene.	jasmonic acid	254-263	Cytochrome P450 superfamily protein	Arabidopsis thaliana	123-127
18793148-9	2008	Genome analyses in Arabidopsis and rice revealed the presence of F-box proteins with a C-terminal lectin-related domain homologous with Nictaba, a jasmonate-inducible lectin from tobacco that was shown to interact with the core structure of high-mannose and complex N-glycans.	jasmonic acid	147-156	F-box protein PP2-B11-like	Nicotiana tabacum	167-173
19704561-6	2008	After wounding, the cooperative function of DGL and DAD1 causes drastic increase of JA.	jasmonic acid	84-86	alpha/beta-Hydrolases superfamily protein	Arabidopsis thaliana	44-47
18653378-4	2008	JAZ proteins repress of JA signaling and are targeted by the E3-ubiquitin ligase SCF(COI1) for proteasome degradation in response to JA.	jasmonic acid	0-2	KIT ligand	Homo sapiens	81-84
19704561-6	2008	After wounding, the cooperative function of DGL and DAD1 causes drastic increase of JA.	jasmonic acid	84-86	alpha/beta-Hydrolases superfamily protein	Arabidopsis thaliana	52-56
19704561-4	2008	The DGL maintains a basal level of JA in unwounded vegetative tissues, while the DAD1 is involved in JA production in floral tissues.	jasmonic acid	101-103	alpha/beta-Hydrolases superfamily protein	Arabidopsis thaliana	81-85
19704561-4	2008	The DGL maintains a basal level of JA in unwounded vegetative tissues, while the DAD1 is involved in JA production in floral tissues.	jasmonic acid	35-37	alpha/beta-Hydrolases superfamily protein	Arabidopsis thaliana	4-7
19704561-7	2008	The analysis of induction kinetics showed that the two enzymes have temporally separated roles in wound response; DGL in early phase and DAD1 in late phase of JA production.	jasmonic acid	159-161	alpha/beta-Hydrolases superfamily protein	Arabidopsis thaliana	114-117
19704561-7	2008	The analysis of induction kinetics showed that the two enzymes have temporally separated roles in wound response; DGL in early phase and DAD1 in late phase of JA production.	jasmonic acid	159-161	alpha/beta-Hydrolases superfamily protein	Arabidopsis thaliana	137-141
18716621-2	2008	Although allene oxide synthase (AOS) and hydroperoxide lyase are atypical cytochrome P450 family members involved in the synthesis of jasmonates and GLVs, respectively, it is unknown how these enzymes rearrange their hydroperoxide substrates into different products.	jasmonic acid	134-144	allene oxide synthase	Arabidopsis thaliana	9-30
18716621-2	2008	Although allene oxide synthase (AOS) and hydroperoxide lyase are atypical cytochrome P450 family members involved in the synthesis of jasmonates and GLVs, respectively, it is unknown how these enzymes rearrange their hydroperoxide substrates into different products.	jasmonic acid	134-144	allene oxide synthase	Arabidopsis thaliana	32-35
18716621-2	2008	Although allene oxide synthase (AOS) and hydroperoxide lyase are atypical cytochrome P450 family members involved in the synthesis of jasmonates and GLVs, respectively, it is unknown how these enzymes rearrange their hydroperoxide substrates into different products.	jasmonic acid	134-144	lyase	Arabidopsis thaliana	55-60
18794352-0	2008	betaC1, the pathogenicity factor of TYLCCNV, interacts with AS1 to alter leaf development and suppress selective jasmonic acid responses.	jasmonic acid	113-126	prostaglandin D2 receptor	Homo sapiens	60-63
18599650-4	2008	These findings are confirmed and extended by biochemical and molecular analyses implicating the kinases in jasmonate- and salicylate-dependent defense responses, mediated in part via the MPK4 substrate MKS1.	jasmonic acid	107-116	MAP kinase 4	Arabidopsis thaliana	187-191
18547396-0	2008	A critical role of two positively charged amino acids in the Jas motif of Arabidopsis JAZ proteins in mediating coronatine- and jasmonoyl isoleucine-dependent interactions with the COI1 F-box protein.	jasmonic acid	61-64	RNI-like superfamily protein	Arabidopsis thaliana	181-185
18547396-3	2008	An important step in JA signaling is the SCF(COI1) E3 ubiquitin ligase-dependent degradation of JAZ repressor proteins.	jasmonic acid	21-23	RNI-like superfamily protein	Arabidopsis thaliana	41-49
18599650-4	2008	These findings are confirmed and extended by biochemical and molecular analyses implicating the kinases in jasmonate- and salicylate-dependent defense responses, mediated in part via the MPK4 substrate MKS1.	jasmonic acid	107-116	MAP kinase substrate 1	Arabidopsis thaliana	202-206
18547396-6	2008	The C-terminal Jas motif, but not the N-terminal (NT) domain or central ZIM domain of JAZ proteins, is critical for JA-Ile/coronatine-dependent interaction with COI1.	jasmonic acid	15-18	RNI-like superfamily protein	Arabidopsis thaliana	161-165
18547396-7	2008	Two positively charged amino acid residues in the Jas domain were identified as essential for coronatine-dependent COI1-JAZ interactions.	jasmonic acid	50-53	RNI-like superfamily protein	Arabidopsis thaliana	115-119
18547396-10	2008	These results not only suggest that coronatine and JA-Ile target the physical interaction between COI1 and the Jas domain of JAZ repressors, but also illustrate the critical role of positively charged amino acids in the Jas domain in mediating the JA-Ile/coronatine-dependent JAZ interaction with COI1.	jasmonic acid	51-53	RNI-like superfamily protein	Arabidopsis thaliana	98-102
18599651-6	2008	CaMNR1-silenced pepper plants were significantly more susceptible to Xanthomonas campestris pv vesicatoria and Colletotrichum coccodes infection and expressed lower levels of salicylic acid-responsive CaBPR1 and CaPR10 and jasmonic acid-responsive CaDEF1.	jasmonic acid	223-236	(+)-neomenthol dehydrogenase	Capsicum annuum	0-6
18547396-10	2008	These results not only suggest that coronatine and JA-Ile target the physical interaction between COI1 and the Jas domain of JAZ repressors, but also illustrate the critical role of positively charged amino acids in the Jas domain in mediating the JA-Ile/coronatine-dependent JAZ interaction with COI1.	jasmonic acid	51-53	RNI-like superfamily protein	Arabidopsis thaliana	297-301
18547396-10	2008	These results not only suggest that coronatine and JA-Ile target the physical interaction between COI1 and the Jas domain of JAZ repressors, but also illustrate the critical role of positively charged amino acids in the Jas domain in mediating the JA-Ile/coronatine-dependent JAZ interaction with COI1.	jasmonic acid	111-114	RNI-like superfamily protein	Arabidopsis thaliana	98-102
18427573-0	2008	Role of the Arabidopsis thaliana NAC transcription factors ANAC019 and ANAC055 in regulating jasmonic acid-signaled defense responses.	jasmonic acid	93-106	NAC domain containing protein 19	Arabidopsis thaliana	59-66
18547396-10	2008	These results not only suggest that coronatine and JA-Ile target the physical interaction between COI1 and the Jas domain of JAZ repressors, but also illustrate the critical role of positively charged amino acids in the Jas domain in mediating the JA-Ile/coronatine-dependent JAZ interaction with COI1.	jasmonic acid	125-127	RNI-like superfamily protein	Arabidopsis thaliana	98-102
18408762-4	2008	We report that jasmonates bind to hexokinase and detach it from the mitochondria and its mitochondrial anchor-the voltage-dependent anion channel (VDAC), as judged by hexokinase immunochemical and activity determinations, surface plasmon resonance analysis and planar lipid bilayer VDAC-activity analysis.	jasmonic acid	15-25	hexokinase 1	Homo sapiens	34-44
18408762-4	2008	We report that jasmonates bind to hexokinase and detach it from the mitochondria and its mitochondrial anchor-the voltage-dependent anion channel (VDAC), as judged by hexokinase immunochemical and activity determinations, surface plasmon resonance analysis and planar lipid bilayer VDAC-activity analysis.	jasmonic acid	15-25	hexokinase 1	Homo sapiens	167-177
18567832-7	2008	We identified a gene, LjERF1, that is most similar to Arabidopsis ERF1, which is up-regulated by ethylene and jasmonic acid and activates downstream defense genes.	jasmonic acid	110-123	ethylene responsive element binding factor 1	Arabidopsis thaliana	24-28
18721316-10	2008	Expression of the AD protein gene can be induced by hydrogen peroxide treatment and reduced by jasmonic acid treatment, as previously shown for WRKY53.	jasmonic acid	95-108	WRKY family transcription factor	Arabidopsis thaliana	144-150
18397206-2	2008	AtNPR1 also modulates SA-induced suppression of jasmonic acid-responsive gene expression, and npr1 mutants manifest enhanced herbivore resistance.	jasmonic acid	48-61	regulatory protein (NPR1)	Arabidopsis thaliana	0-6
19513248-3	2008	In Arabidopsis, pharmacological experiments revealed that SA exerts a strong antagonistic effect on JA-responsive genes, such as PDF1.2, indicating that the SA pathway can be prioritized over the JA pathway.	jasmonic acid	100-102	plant defensin 1.2	Arabidopsis thaliana	129-135
18427573-5	2008	That the JA-induced expression of the two NAC genes depends on the function of COI1 and AtMYC2, together with the finding that overexpression of ANAC019 partially rescued the JA-related phenotype of the atmyc2-2 mutant, has led us to a hypothesis that the two NAC proteins act downstream of AtMYC2 to regulate JA-signaled defense responses.	jasmonic acid	175-177	NAC domain containing protein 19	Arabidopsis thaliana	145-152
18427573-5	2008	That the JA-induced expression of the two NAC genes depends on the function of COI1 and AtMYC2, together with the finding that overexpression of ANAC019 partially rescued the JA-related phenotype of the atmyc2-2 mutant, has led us to a hypothesis that the two NAC proteins act downstream of AtMYC2 to regulate JA-signaled defense responses.	jasmonic acid	175-177	Basic helix-loop-helix (bHLH) DNA-binding family protein	Arabidopsis thaliana	203-209
18427573-0	2008	Role of the Arabidopsis thaliana NAC transcription factors ANAC019 and ANAC055 in regulating jasmonic acid-signaled defense responses.	jasmonic acid	93-106	NAC domain containing protein 3	Arabidopsis thaliana	71-78
18427573-4	2008	The anac019 anac055 double mutant plants showed attenuated JA-induced VEGETATIVE STORAGE PROTEIN1 (VSP1) and LIPOXYGENASE2 (LOX2) expression, whereas transgenic plants overexpressing the two NAC genes showed enhanced JA-induced VSP1 and LOX2 expression.	jasmonic acid	59-61	NAC domain containing protein 19	Arabidopsis thaliana	4-11
18427573-4	2008	The anac019 anac055 double mutant plants showed attenuated JA-induced VEGETATIVE STORAGE PROTEIN1 (VSP1) and LIPOXYGENASE2 (LOX2) expression, whereas transgenic plants overexpressing the two NAC genes showed enhanced JA-induced VSP1 and LOX2 expression.	jasmonic acid	59-61	NAC domain containing protein 3	Arabidopsis thaliana	12-19
18427573-4	2008	The anac019 anac055 double mutant plants showed attenuated JA-induced VEGETATIVE STORAGE PROTEIN1 (VSP1) and LIPOXYGENASE2 (LOX2) expression, whereas transgenic plants overexpressing the two NAC genes showed enhanced JA-induced VSP1 and LOX2 expression.	jasmonic acid	59-61	vegetative storage protein 1	Arabidopsis thaliana	70-97
18427573-4	2008	The anac019 anac055 double mutant plants showed attenuated JA-induced VEGETATIVE STORAGE PROTEIN1 (VSP1) and LIPOXYGENASE2 (LOX2) expression, whereas transgenic plants overexpressing the two NAC genes showed enhanced JA-induced VSP1 and LOX2 expression.	jasmonic acid	59-61	vegetative storage protein 1	Arabidopsis thaliana	99-103
18427573-4	2008	The anac019 anac055 double mutant plants showed attenuated JA-induced VEGETATIVE STORAGE PROTEIN1 (VSP1) and LIPOXYGENASE2 (LOX2) expression, whereas transgenic plants overexpressing the two NAC genes showed enhanced JA-induced VSP1 and LOX2 expression.	jasmonic acid	59-61	lipoxygenase 2	Arabidopsis thaliana	109-122
18427573-4	2008	The anac019 anac055 double mutant plants showed attenuated JA-induced VEGETATIVE STORAGE PROTEIN1 (VSP1) and LIPOXYGENASE2 (LOX2) expression, whereas transgenic plants overexpressing the two NAC genes showed enhanced JA-induced VSP1 and LOX2 expression.	jasmonic acid	59-61	lipoxygenase 2	Arabidopsis thaliana	124-128
18427573-4	2008	The anac019 anac055 double mutant plants showed attenuated JA-induced VEGETATIVE STORAGE PROTEIN1 (VSP1) and LIPOXYGENASE2 (LOX2) expression, whereas transgenic plants overexpressing the two NAC genes showed enhanced JA-induced VSP1 and LOX2 expression.	jasmonic acid	59-61	vegetative storage protein 1	Arabidopsis thaliana	228-232
18427573-4	2008	The anac019 anac055 double mutant plants showed attenuated JA-induced VEGETATIVE STORAGE PROTEIN1 (VSP1) and LIPOXYGENASE2 (LOX2) expression, whereas transgenic plants overexpressing the two NAC genes showed enhanced JA-induced VSP1 and LOX2 expression.	jasmonic acid	59-61	lipoxygenase 2	Arabidopsis thaliana	237-241
18427573-4	2008	The anac019 anac055 double mutant plants showed attenuated JA-induced VEGETATIVE STORAGE PROTEIN1 (VSP1) and LIPOXYGENASE2 (LOX2) expression, whereas transgenic plants overexpressing the two NAC genes showed enhanced JA-induced VSP1 and LOX2 expression.	jasmonic acid	217-219	NAC domain containing protein 19	Arabidopsis thaliana	4-11
18427573-4	2008	The anac019 anac055 double mutant plants showed attenuated JA-induced VEGETATIVE STORAGE PROTEIN1 (VSP1) and LIPOXYGENASE2 (LOX2) expression, whereas transgenic plants overexpressing the two NAC genes showed enhanced JA-induced VSP1 and LOX2 expression.	jasmonic acid	217-219	NAC domain containing protein 3	Arabidopsis thaliana	12-19
18427573-5	2008	That the JA-induced expression of the two NAC genes depends on the function of COI1 and AtMYC2, together with the finding that overexpression of ANAC019 partially rescued the JA-related phenotype of the atmyc2-2 mutant, has led us to a hypothesis that the two NAC proteins act downstream of AtMYC2 to regulate JA-signaled defense responses.	jasmonic acid	9-11	RNI-like superfamily protein	Arabidopsis thaliana	79-83
18427573-5	2008	That the JA-induced expression of the two NAC genes depends on the function of COI1 and AtMYC2, together with the finding that overexpression of ANAC019 partially rescued the JA-related phenotype of the atmyc2-2 mutant, has led us to a hypothesis that the two NAC proteins act downstream of AtMYC2 to regulate JA-signaled defense responses.	jasmonic acid	9-11	Basic helix-loop-helix (bHLH) DNA-binding family protein	Arabidopsis thaliana	88-94
18427573-5	2008	That the JA-induced expression of the two NAC genes depends on the function of COI1 and AtMYC2, together with the finding that overexpression of ANAC019 partially rescued the JA-related phenotype of the atmyc2-2 mutant, has led us to a hypothesis that the two NAC proteins act downstream of AtMYC2 to regulate JA-signaled defense responses.	jasmonic acid	9-11	NAC domain containing protein 19	Arabidopsis thaliana	145-152
18427573-5	2008	That the JA-induced expression of the two NAC genes depends on the function of COI1 and AtMYC2, together with the finding that overexpression of ANAC019 partially rescued the JA-related phenotype of the atmyc2-2 mutant, has led us to a hypothesis that the two NAC proteins act downstream of AtMYC2 to regulate JA-signaled defense responses.	jasmonic acid	9-11	Basic helix-loop-helix (bHLH) DNA-binding family protein	Arabidopsis thaliana	203-209
18427573-5	2008	That the JA-induced expression of the two NAC genes depends on the function of COI1 and AtMYC2, together with the finding that overexpression of ANAC019 partially rescued the JA-related phenotype of the atmyc2-2 mutant, has led us to a hypothesis that the two NAC proteins act downstream of AtMYC2 to regulate JA-signaled defense responses.	jasmonic acid	9-11	Basic helix-loop-helix (bHLH) DNA-binding family protein	Arabidopsis thaliana	291-297
18427573-5	2008	That the JA-induced expression of the two NAC genes depends on the function of COI1 and AtMYC2, together with the finding that overexpression of ANAC019 partially rescued the JA-related phenotype of the atmyc2-2 mutant, has led us to a hypothesis that the two NAC proteins act downstream of AtMYC2 to regulate JA-signaled defense responses.	jasmonic acid	175-177	NAC domain containing protein 19	Arabidopsis thaliana	145-152
18427573-5	2008	That the JA-induced expression of the two NAC genes depends on the function of COI1 and AtMYC2, together with the finding that overexpression of ANAC019 partially rescued the JA-related phenotype of the atmyc2-2 mutant, has led us to a hypothesis that the two NAC proteins act downstream of AtMYC2 to regulate JA-signaled defense responses.	jasmonic acid	175-177	Basic helix-loop-helix (bHLH) DNA-binding family protein	Arabidopsis thaliana	203-209
18492687-0	2008	Jasmonate-induced nicotine formation in tobacco is mediated by tobacco COI1 and JAZ genes.	jasmonic acid	0-9	coronatine-insensitive protein 1-like	Nicotiana tabacum	71-75
18492687-2	2008	In Arabidopsis, jasmonate-induced ZIM-domain-containing (JAZ) proteins have recently been found to be critical transcriptional repressors linking CORONATINE INSENSTIVE1 (COI1)-mediated jasmonate perception and jasmonate-regulated transcriptional regulation.	jasmonic acid	16-25	RNI-like superfamily protein	Arabidopsis thaliana	170-174
18492687-7	2008	Formation of tobacco alkaloids in jasmonate-elicited tobacco BY-2 cells was also effectively suppressed by the COI1 RNAi (RNA interference) construct and by the dominant-negative truncated JAZ constructs.	jasmonic acid	34-43	coronatine-insensitive protein 1-like	Nicotiana tabacum	111-115
18539774-9	2008	The glutathione biosynthesis inhibitor l-buthionine-sulfoximine strongly reduced PDF1.2 suppression by SA, suggesting that SA-mediated redox modulation plays an important role in the SA-mediated attenuation of the JA signaling pathway.	jasmonic acid	214-216	protodermal factor 1	Arabidopsis thaliana	81-85
18431595-6	2008	StAOS2 encodes a cytochrome P450 enzyme that is essential for biosynthesis of the defense signaling molecule jasmonic acid.	jasmonic acid	109-122	allene oxide synthase, chloroplastic	Solanum tuberosum	0-6
18431595-7	2008	Allele non-specific dsRNAi-mediated silencing of StAOS2 in potato drastically reduced jasmonic acid production and compromised quantitative late blight resistance.	jasmonic acid	86-99	allene oxide synthase, chloroplastic	Solanum tuberosum	49-55
18467450-0	2008	The AP2/ERF domain transcription factor ORA59 integrates jasmonic acid and ethylene signals in plant defense.	jasmonic acid	57-70	Integrase-type DNA-binding superfamily protein	Arabidopsis thaliana	4-7
18467450-0	2008	The AP2/ERF domain transcription factor ORA59 integrates jasmonic acid and ethylene signals in plant defense.	jasmonic acid	57-70	octadecanoid-responsive AP2/ERF 59	Arabidopsis thaliana	40-45
18467450-4	2008	JA- and ethylene-responsive expression of several defense genes, including PLANT DEFENSIN1.2 (PDF1.2), depended on ORA59.	jasmonic acid	0-2	plant defensin 1.2	Arabidopsis thaliana	94-100
18467450-4	2008	JA- and ethylene-responsive expression of several defense genes, including PLANT DEFENSIN1.2 (PDF1.2), depended on ORA59.	jasmonic acid	0-2	octadecanoid-responsive AP2/ERF 59	Arabidopsis thaliana	115-120
18219494-9	2008	These results demonstrate that WRKY41 may be a key regulator in the cross talk of salicylic acid and jasmonic acid pathways.	jasmonic acid	101-114	WRKY family transcription factor	Arabidopsis thaliana	31-37
18713432-5	2008	Furthermore, we showed that JA inhibits expression of WRKY70 and PR1 by both COI1-dependent and COI1-independent pathways.	jasmonic acid	28-30	WRKY DNA-binding protein 70	Arabidopsis thaliana	54-60
18713432-5	2008	Furthermore, we showed that JA inhibits expression of WRKY70 and PR1 by both COI1-dependent and COI1-independent pathways.	jasmonic acid	28-30	pathogenesis-related protein 1	Arabidopsis thaliana	65-68
18713432-5	2008	Furthermore, we showed that JA inhibits expression of WRKY70 and PR1 by both COI1-dependent and COI1-independent pathways.	jasmonic acid	28-30	RNI-like superfamily protein	Arabidopsis thaliana	77-81
18713432-5	2008	Furthermore, we showed that JA inhibits expression of WRKY70 and PR1 by both COI1-dependent and COI1-independent pathways.	jasmonic acid	28-30	RNI-like superfamily protein	Arabidopsis thaliana	96-100
18247047-3	2008	JAR1 encodes an enzyme that conjugates jasmonic acid (JA) to isoleucine, which was recently shown to function directly in CORONATINE INSENSITIVE 1 (COI1)-mediated signal transduction.	jasmonic acid	39-52	RNI-like superfamily protein	Arabidopsis thaliana	148-152
18247047-3	2008	JAR1 encodes an enzyme that conjugates jasmonic acid (JA) to isoleucine, which was recently shown to function directly in CORONATINE INSENSITIVE 1 (COI1)-mediated signal transduction.	jasmonic acid	0-2	RNI-like superfamily protein	Arabidopsis thaliana	122-146
18247047-3	2008	JAR1 encodes an enzyme that conjugates jasmonic acid (JA) to isoleucine, which was recently shown to function directly in CORONATINE INSENSITIVE 1 (COI1)-mediated signal transduction.	jasmonic acid	0-2	RNI-like superfamily protein	Arabidopsis thaliana	148-152
18247047-8	2008	JAR1 transcript also increased dramatically in wounded tissue, reaching a maximum after about 1 h. In the jar1-1 mutant JA-Ile was only about 10% of the WT level at 40 min after leaf wounding, and reached a maximum of 47 pmole/g FW at 2 h. However, the reduced accumulation of JA-Ile had little or no effect on several jasmonate-dependent wound-induced genes.	jasmonic acid	319-328	Auxin-responsive GH3 family protein	Arabidopsis thaliana	0-4
18434606-3	2008	AtPHO1;H10 expression was increased by application of the jasmonic acid (JA) precursor 12-oxo-phytodienoic acid (OPDA), but not by JA or coronatine.	jasmonic acid	58-71	phosphate 1	Arabidopsis thaliana	0-6
18434606-3	2008	AtPHO1;H10 expression was increased by application of the jasmonic acid (JA) precursor 12-oxo-phytodienoic acid (OPDA), but not by JA or coronatine.	jasmonic acid	73-75	phosphate 1	Arabidopsis thaliana	0-6
18458331-2	2008	An amino acid-conjugated form of JA, jasmonoyl-isoleucine (JA-Ile), stimulates binding of the F-box protein coronatine-insensitive 1 (COI1) to, and subsequent ubiquitin-dependent degradation of, jasmonate ZIM domain (JAZ) proteins that repress transcription of JA-responsive genes.	jasmonic acid	33-35	coronatine-insensitive 1	Solanum lycopersicum	108-132
18458331-2	2008	An amino acid-conjugated form of JA, jasmonoyl-isoleucine (JA-Ile), stimulates binding of the F-box protein coronatine-insensitive 1 (COI1) to, and subsequent ubiquitin-dependent degradation of, jasmonate ZIM domain (JAZ) proteins that repress transcription of JA-responsive genes.	jasmonic acid	33-35	coronatine-insensitive 1	Solanum lycopersicum	134-138
18458331-3	2008	The virulence factor coronatine (COR), which is produced by plant pathogenic strains of Pseudomonas syringae, suppresses host defense responses by activating JA signaling in a COI1-dependent manner.	jasmonic acid	158-160	coronatine-insensitive 1	Solanum lycopersicum	176-180
18458331-5	2008	Here, we show that interaction of tomato COI1 with divergent members of the JAZ family is highly specific for JA-Ile and structurally related JA conjugates and that COR is approximately 1,000-fold more active than JA-Ile in promoting this interaction in vitro.	jasmonic acid	76-78	coronatine-insensitive 1	Solanum lycopersicum	41-45
18458331-5	2008	Here, we show that interaction of tomato COI1 with divergent members of the JAZ family is highly specific for JA-Ile and structurally related JA conjugates and that COR is approximately 1,000-fold more active than JA-Ile in promoting this interaction in vitro.	jasmonic acid	110-112	coronatine-insensitive 1	Solanum lycopersicum	41-45
18458331-8	2008	Finally, we show that the C-terminal region of JAZ3 containing the highly conserved Jas motif is necessary and sufficient for hormone-induced COI1-JAZ interaction.	jasmonic acid	84-87	coronatine-insensitive 1	Solanum lycopersicum	142-146
18713432-1	2008	The transcription factor WRKY70 was previously reported to be a common component in salicylic acid (SA) and jasmonate (JA) mediated signal pathways in Arabidopsis.	jasmonic acid	108-117	WRKY DNA-binding protein 70	Arabidopsis thaliana	25-31
18713432-1	2008	The transcription factor WRKY70 was previously reported to be a common component in salicylic acid (SA) and jasmonate (JA) mediated signal pathways in Arabidopsis.	jasmonic acid	119-121	WRKY DNA-binding protein 70	Arabidopsis thaliana	25-31
18247047-3	2008	JAR1 encodes an enzyme that conjugates jasmonic acid (JA) to isoleucine, which was recently shown to function directly in CORONATINE INSENSITIVE 1 (COI1)-mediated signal transduction.	jasmonic acid	39-52	Auxin-responsive GH3 family protein	Arabidopsis thaliana	0-4
18247047-3	2008	JAR1 encodes an enzyme that conjugates jasmonic acid (JA) to isoleucine, which was recently shown to function directly in CORONATINE INSENSITIVE 1 (COI1)-mediated signal transduction.	jasmonic acid	39-52	RNI-like superfamily protein	Arabidopsis thaliana	122-146
18088304-0	2008	Plastid omega3-fatty acid desaturase-dependent accumulation of a systemic acquired resistance inducing activity in petiole exudates of Arabidopsis thaliana is independent of jasmonic acid.	jasmonic acid	174-187	fatty acid desaturase 8	Arabidopsis thaliana	8-36
18088307-7	2008	The pmr4-1 mutant produced less JA upon A. brassicicola infection than the wild-type.	jasmonic acid	32-34	glucan synthase-like 5	Arabidopsis thaliana	4-8
17643553-3	2008	In this study, the contents of the LOX-derived metabolites hydroperoxylinolenic acid (HPOT), jasmonic acid (JA), tuberonic acid (TA) and tuberonic acid glucoside (TAG) were analyzed in leaves of potatoes growing at different temperatures.	jasmonic acid	108-110	probable linoleate 9S-lipoxygenase 5	Solanum tuberosum	35-38
18218969-5	2008	In mutants deficient in jasmonate, salicylate, or ethylene signaling, APR mRNA levels were increased upon salt exposure similar to wild-type plants.	jasmonic acid	24-33	APS reductase 1	Arabidopsis thaliana	70-73
18223147-6	2008	Wound-induced expression of JAZ and other CORONATINE-INSENSITIVE1 (COI1)-dependent genes was not impaired in the jar1-1 mutant that is partially deficient in the conversion of JA to JA-Ile.	jasmonic acid	28-30	RNI-like superfamily protein	Arabidopsis thaliana	42-65
18223147-6	2008	Wound-induced expression of JAZ and other CORONATINE-INSENSITIVE1 (COI1)-dependent genes was not impaired in the jar1-1 mutant that is partially deficient in the conversion of JA to JA-Ile.	jasmonic acid	28-30	RNI-like superfamily protein	Arabidopsis thaliana	67-71
18223147-7	2008	Experiments performed with the protein synthesis inhibitor cycloheximide provided evidence that JAZs, MYC2, and genes encoding several JA biosynthetic enzymes are primary response genes whose expression is derepressed upon COI1-dependent turnover of a labile repressor protein(s).	jasmonic acid	96-98	RNI-like superfamily protein	Arabidopsis thaliana	223-227
18441338-3	2008	A strong activated expression of the gene coding for the JA-biosynthetic beta-oxidation enzyme 3-ketoacyl-CoA thiolase 2 (KAT2) in natural and dark-induced senescing leaves of Arabidopsis thaliana is reported here.	jasmonic acid	57-59	peroxisomal 3-ketoacyl-CoA thiolase 3	Arabidopsis thaliana	95-120
17964617-7	2008	Although less abundant, differences were also observed in levels of ABA, JA, and SA between WT and the mn1 alleles.	jasmonic acid	73-75	miniature seed 1	Zea mays	103-106
18383854-8	2008	The TPA-stimulated JAS-REN cells showed an increase in the expression of integrin alphaIIbbeta3 complex (CD41a) and integrin beta3 (CD61), while glycophorin A (CD235a) expression was decreased.	jasmonic acid	19-22	plasminogen activator, tissue type	Homo sapiens	4-7
18383854-8	2008	The TPA-stimulated JAS-REN cells showed an increase in the expression of integrin alphaIIbbeta3 complex (CD41a) and integrin beta3 (CD61), while glycophorin A (CD235a) expression was decreased.	jasmonic acid	19-22	renin	Homo sapiens	23-26
18383854-8	2008	The TPA-stimulated JAS-REN cells showed an increase in the expression of integrin alphaIIbbeta3 complex (CD41a) and integrin beta3 (CD61), while glycophorin A (CD235a) expression was decreased.	jasmonic acid	19-22	integrin subunit beta 3	Homo sapiens	105-130
18383854-8	2008	The TPA-stimulated JAS-REN cells showed an increase in the expression of integrin alphaIIbbeta3 complex (CD41a) and integrin beta3 (CD61), while glycophorin A (CD235a) expression was decreased.	jasmonic acid	19-22	integrin subunit beta 3	Homo sapiens	132-136
18383854-8	2008	The TPA-stimulated JAS-REN cells showed an increase in the expression of integrin alphaIIbbeta3 complex (CD41a) and integrin beta3 (CD61), while glycophorin A (CD235a) expression was decreased.	jasmonic acid	19-22	glycophorin A (MNS blood group)	Homo sapiens	145-158
18383854-8	2008	The TPA-stimulated JAS-REN cells showed an increase in the expression of integrin alphaIIbbeta3 complex (CD41a) and integrin beta3 (CD61), while glycophorin A (CD235a) expression was decreased.	jasmonic acid	19-22	glycophorin A (MNS blood group)	Homo sapiens	160-166
18261950-2	2008	Jasmonate promotes interaction between JAZ proteins and the SCF(COI1) ubiquitin ligase, leading to JAZ degradation via the 26S proteasome in Arabidopsis thaliana.	jasmonic acid	0-9	RNI-like superfamily protein	Arabidopsis thaliana	64-68
19704873-2	2008	In Arabidopsis, pharmacological experiments revealed that SA exerts a strong antagonistic effect on JA-responsive genes, such as PDF1.2, indicating that the SA pathway can be prioritized over the JA pathway.	jasmonic acid	100-102	plant defensin 1.2	Arabidopsis thaliana	129-135
18441338-3	2008	A strong activated expression of the gene coding for the JA-biosynthetic beta-oxidation enzyme 3-ketoacyl-CoA thiolase 2 (KAT2) in natural and dark-induced senescing leaves of Arabidopsis thaliana is reported here.	jasmonic acid	57-59	peroxisomal 3-ketoacyl-CoA thiolase 3	Arabidopsis thaliana	122-126
17896114-9	2008	The localization of LAP-A was distinct from the location of early wound-response proteins that are important in the biosynthesis of jasmonic acid or systemin and more similar to the late wound-response proteins with primary roles in defense.	jasmonic acid	132-145	leucine aminopeptidase 2, chloroplastic	Solanum lycopersicum	20-23
18836139-7	2008	Furthermore, the expression of ACBP4 and AtEBP in Northern blot analyses was induced by the ethylene precursor 1-aminocyclopropane-1-carboxylic acid, methyl jasmonate treatments, and Botrytis cinerea infection, suggesting that the interaction of ACBP4 and AtEBP may be related to AtEBP-mediated defence possibly via ethylene and/or jasmonate signalling.	jasmonic acid	157-166	acyl-CoA binding protein 4	Arabidopsis thaliana	31-36
18836139-7	2008	Furthermore, the expression of ACBP4 and AtEBP in Northern blot analyses was induced by the ethylene precursor 1-aminocyclopropane-1-carboxylic acid, methyl jasmonate treatments, and Botrytis cinerea infection, suggesting that the interaction of ACBP4 and AtEBP may be related to AtEBP-mediated defence possibly via ethylene and/or jasmonate signalling.	jasmonic acid	157-166	ethylene-responsive element binding protein	Arabidopsis thaliana	41-46
17995915-6	2008	Expression analyses for 29 genes showed that expression of wound-inducible genes such as those coding for PROTEINASE INHIBITOR2, POLYPHENOL OXIDASE, THREONINE DEAMINASE or ARGINASE was induced by JAME and less induced or even down-regulated by 12-OH-JA and 12-HSO(4)-JA.	jasmonic acid	196-198	threonine dehydratase 2 biosynthetic, chloroplastic	Solanum lycopersicum	149-168
17786451-3	2008	After the analysis on the JCTFs over-expressor plants, we identified four JCTFs, i.e., WRKY18, At1g74930 and At3g53600 in addition to AtMYC2, as the positive regulators in the JA-mediated signaling pathway in response to Arabidopsis wounding.	jasmonic acid	176-178	WRKY DNA-binding protein 18	Arabidopsis thaliana	87-93
17786451-3	2008	After the analysis on the JCTFs over-expressor plants, we identified four JCTFs, i.e., WRKY18, At1g74930 and At3g53600 in addition to AtMYC2, as the positive regulators in the JA-mediated signaling pathway in response to Arabidopsis wounding.	jasmonic acid	176-178	Basic helix-loop-helix (bHLH) DNA-binding family protein	Arabidopsis thaliana	134-140
17899174-5	2008	Induction of PvLOX6 mRNA by wounding ethylene and jasmonic acid on the one side, and non-host pathogen, salicylic acid on the other indicates that common bean uses the same LOX to synthesize oxylipins in response to different stresses.	jasmonic acid	50-63	linoleate 9S-lipoxygenase 2	Solanum tuberosum	15-18
18657213-7	2008	This motif is a binding site for the transcription factor MYC2, which plays a central role in JA- and abscisic acid-regulated signaling.	jasmonic acid	94-96	Basic helix-loop-helix (bHLH) DNA-binding family protein	Arabidopsis thaliana	58-62
17922288-10	2008	Northern blot analysis demonstrated that ZmLOX6 was induced by jasmonic acid, but repressed by abscisic acid, salicylic acid and ethylene and was not responsive to wounding or insects.	jasmonic acid	63-76	linoleate 9S-lipoxygenase6	Zea mays	41-47
18657213-9	2008	Moreover, mutants impaired in the JASMONATE-INSENSITIVE1/MYC2 gene (jin1-1 and jin1-2) were unable to mount WCS417r-ISR against Pst DC3000 and the downy mildew pathogen Hyaloperonospora parasitica.	jasmonic acid	34-43	Basic helix-loop-helix (bHLH) DNA-binding family protein	Arabidopsis thaliana	57-61
17981874-5	2007	In agreement with these analyses, epistasis studies performed by crossing fou2 with aos indicated that elevated levels of JA in fou2 are the major determinant of the mutant phenotype.	jasmonic acid	122-124	two-pore channel 1	Arabidopsis thaliana	74-78
19002244-9	2008	We show that a gene, 12-oxo-phytodienoate reductase, which catalyses a step in JA biosynthesis, and which we confirm is not required for defence, is however required for wound-induced stunting.	jasmonic acid	79-81	oxophytodienoate-reductase 3	Arabidopsis thaliana	21-51
17981874-5	2007	In agreement with these analyses, epistasis studies performed by crossing fou2 with aos indicated that elevated levels of JA in fou2 are the major determinant of the mutant phenotype.	jasmonic acid	122-124	two-pore channel 1	Arabidopsis thaliana	128-132
17616737-3	2007	We found that MYC2 negatively regulates Trp and Trp-derived secondary metabolism such as indole glucosinolate biosynthesis during JA signaling.	jasmonic acid	130-132	Basic helix-loop-helix (bHLH) DNA-binding family protein	Arabidopsis thaliana	14-18
17977145-5	2007	Phylogenetic analysis shows that BoLOX is closely related to B. napus BnLOX2fl and Arabidopsis thaliana AtLOX2, which mediates JA biosynthesis.	jasmonic acid	127-129	lipoxygenase 2	Arabidopsis thaliana	104-110
17977154-11	2007	WRKY53 and HSPRO2 appear to function downstream of salicylic acid and to be negatively regulated by signaling through jasmonic acid and ethylene.	jasmonic acid	118-131	WRKY family transcription factor	Arabidopsis thaliana	0-6
17623784-2	2007	Perception of systemin by the membrane-bound receptor SR160 results in activation of MAPKs, synthesis of jasmonic acid (JA), and expression of defense genes.	jasmonic acid	105-118	brassinosteroid LRR receptor kinase	Solanum lycopersicum	54-59
17623784-2	2007	Perception of systemin by the membrane-bound receptor SR160 results in activation of MAPKs, synthesis of jasmonic acid (JA), and expression of defense genes.	jasmonic acid	120-122	brassinosteroid LRR receptor kinase	Solanum lycopersicum	54-59
17623784-5	2007	Cosilencing of the MAPKs MPK1 and MPK2 reduced MPK1/2 kinase activity, JA biosynthesis, and expression of JA-dependent defense genes.	jasmonic acid	71-73	Mitogen-activated protein kinase	Solanum lycopersicum	25-29
17623784-5	2007	Cosilencing of the MAPKs MPK1 and MPK2 reduced MPK1/2 kinase activity, JA biosynthesis, and expression of JA-dependent defense genes.	jasmonic acid	71-73	mitogen-activated protein kinase 2	Solanum lycopersicum	34-38
17623784-7	2007	These data show that MPK1 and MPK2 are essential components of the systemin signaling pathway and most likely function upstream of JA biosynthesis.	jasmonic acid	131-133	Mitogen-activated protein kinase	Solanum lycopersicum	21-25
17623784-7	2007	These data show that MPK1 and MPK2 are essential components of the systemin signaling pathway and most likely function upstream of JA biosynthesis.	jasmonic acid	131-133	mitogen-activated protein kinase 2	Solanum lycopersicum	30-34
17561925-3	2007	ir-coi1 plants are male sterile and impaired in JA-elicited direct [nicotine, caffeoylputrescine and trypsin proteinase inhibitor (TPI) activity] and indirect (cis-alpha-bergamotene emission) defense responses; responses not elicited by JA treatment (ethylene production and flower TPI activity) were unaffected.	jasmonic acid	48-50	coronatine-insensitive 1	Solanum lycopersicum	3-7
17561925-3	2007	ir-coi1 plants are male sterile and impaired in JA-elicited direct [nicotine, caffeoylputrescine and trypsin proteinase inhibitor (TPI) activity] and indirect (cis-alpha-bergamotene emission) defense responses; responses not elicited by JA treatment (ethylene production and flower TPI activity) were unaffected.	jasmonic acid	237-239	coronatine-insensitive 1	Solanum lycopersicum	3-7
17567636-1	2007	An Arabidopsis mutant line named hy1-101 was isolated because it shows stunted root growth on medium containing low concentrations of jasmonic acid (JA).	jasmonic acid	134-147	Plant heme oxygenase (decyclizing) family protein	Arabidopsis thaliana	33-36
17567636-1	2007	An Arabidopsis mutant line named hy1-101 was isolated because it shows stunted root growth on medium containing low concentrations of jasmonic acid (JA).	jasmonic acid	149-151	Plant heme oxygenase (decyclizing) family protein	Arabidopsis thaliana	33-36
17223227-5	2007	Jasmonic acid treatment for 24h, however, increased lipoxygenase and allene oxide cyclase protein levels in both developmental stages analyzed.	jasmonic acid	0-13	probable linoleate 9S-lipoxygenase 5	Solanum tuberosum	52-64
17720140-4	2007	AtHS1 mRNA was induced by exposure to external stresses, such as salicylic acid and jasmonic acid.	jasmonic acid	84-97	heat stable protein 1	Arabidopsis thaliana	0-5
17905899-9	2007	SIZ1-dependent, drought-responsive genes include those encoding enzymes of the anthocyanin synthesis pathway and jasmonate response.	jasmonic acid	113-122	DNA-binding protein with MIZ/SP-RING zinc finger, PHD-finger and SAP domain-containing protein	Arabidopsis thaliana	0-4
17637677-4	2007	Jasmonate treatment causes JAZ1 degradation and this degradation is dependent on activities of the SCF(COI1) ubiquitin ligase and the 26S proteasome.	jasmonic acid	0-9	KIT ligand	Homo sapiens	99-102
17630279-0	2007	The PP2C-type phosphatase AP2C1, which negatively regulates MPK4 and MPK6, modulates innate immunity, jasmonic acid, and ethylene levels in Arabidopsis.	jasmonic acid	102-115	Protein phosphatase 2C family protein	Arabidopsis thaliana	26-31
17630279-0	2007	The PP2C-type phosphatase AP2C1, which negatively regulates MPK4 and MPK6, modulates innate immunity, jasmonic acid, and ethylene levels in Arabidopsis.	jasmonic acid	102-115	MAP kinase 4	Arabidopsis thaliana	60-64
17630279-0	2007	The PP2C-type phosphatase AP2C1, which negatively regulates MPK4 and MPK6, modulates innate immunity, jasmonic acid, and ethylene levels in Arabidopsis.	jasmonic acid	102-115	MAP kinase 6	Arabidopsis thaliana	69-73
17567636-3	2007	Here, we show that the hy1-101 mutant has increased production of JA and its jasmonate-related phenotype is suppressed by the coi1-1 mutation that interrupts JA signaling.	jasmonic acid	66-68	Plant heme oxygenase (decyclizing) family protein	Arabidopsis thaliana	23-26
17567636-3	2007	Here, we show that the hy1-101 mutant has increased production of JA and its jasmonate-related phenotype is suppressed by the coi1-1 mutation that interrupts JA signaling.	jasmonic acid	66-68	RNI-like superfamily protein	Arabidopsis thaliana	126-130
17616737-4	2007	Furthermore, MYC2 positively regulates JA-mediated resistance to insect pests, such as Helicoverpa armigera, and tolerance to oxidative stress, possibly via enhanced ascorbate redox cycling and flavonoid biosynthesis.	jasmonic acid	39-41	Basic helix-loop-helix (bHLH) DNA-binding family protein	Arabidopsis thaliana	13-17
17567636-6	2007	Indeed, we show that, like hy1-101, independent alleles of the phytochrome chromophore-deficient mutants, including hy1-100 and hy2 (CS68), also show elevated JA levels and constant expression of JA-inducible defense genes.	jasmonic acid	159-161	Plant heme oxygenase (decyclizing) family protein	Arabidopsis thaliana	27-30
17567636-6	2007	Indeed, we show that, like hy1-101, independent alleles of the phytochrome chromophore-deficient mutants, including hy1-100 and hy2 (CS68), also show elevated JA levels and constant expression of JA-inducible defense genes.	jasmonic acid	159-161	Plant heme oxygenase (decyclizing) family protein	Arabidopsis thaliana	116-119
17616737-6	2007	MYC2 also negatively regulates its own expression, and this may be one of the mechanisms used in fine-tuning JA signaling.	jasmonic acid	109-111	Basic helix-loop-helix (bHLH) DNA-binding family protein	Arabidopsis thaliana	0-4
17567636-6	2007	Indeed, we show that, like hy1-101, independent alleles of the phytochrome chromophore-deficient mutants, including hy1-100 and hy2 (CS68), also show elevated JA levels and constant expression of JA-inducible defense genes.	jasmonic acid	159-161	phytochromobilin:ferredoxin oxidoreductase, chloroplast / phytochromobilin synthase (HY2)	Arabidopsis thaliana	128-131
17567636-6	2007	Indeed, we show that, like hy1-101, independent alleles of the phytochrome chromophore-deficient mutants, including hy1-100 and hy2 (CS68), also show elevated JA levels and constant expression of JA-inducible defense genes.	jasmonic acid	196-198	Plant heme oxygenase (decyclizing) family protein	Arabidopsis thaliana	116-119
17567636-6	2007	Indeed, we show that, like hy1-101, independent alleles of the phytochrome chromophore-deficient mutants, including hy1-100 and hy2 (CS68), also show elevated JA levels and constant expression of JA-inducible defense genes.	jasmonic acid	196-198	phytochromobilin:ferredoxin oxidoreductase, chloroplast / phytochromobilin synthase (HY2)	Arabidopsis thaliana	128-131
17313369-5	2007	TOP Y605A was inhibited less efficiently by JA-2 {N-[1-(R,S)-carboxy-3-phenylpropyl]Ala-Aib-Tyr-p-aminobenzoate}, which suggested that the aromatic ring of Tyr605 was an important anchor for its interaction with wild-type TOP.	jasmonic acid	44-46	thimet oligopeptidase 1	Homo sapiens	0-3
17566109-1	2007	AtPep1, a 23-aa peptide encoded by Arabidopsis PROPEP1, a member of a small, six-member gene family, activates expression of the defense gene PDF1.2 (encoding defensin) and its own precursor gene, PROPEP1, through the jasmonate/ethylene signaling pathway, mediated by a cell-surface receptor, PEPR1.	jasmonic acid	218-227	precursor of peptide 1	Arabidopsis thaliana	0-6
17566109-1	2007	AtPep1, a 23-aa peptide encoded by Arabidopsis PROPEP1, a member of a small, six-member gene family, activates expression of the defense gene PDF1.2 (encoding defensin) and its own precursor gene, PROPEP1, through the jasmonate/ethylene signaling pathway, mediated by a cell-surface receptor, PEPR1.	jasmonic acid	218-227	precursor of peptide 1	Arabidopsis thaliana	47-54
17566109-1	2007	AtPep1, a 23-aa peptide encoded by Arabidopsis PROPEP1, a member of a small, six-member gene family, activates expression of the defense gene PDF1.2 (encoding defensin) and its own precursor gene, PROPEP1, through the jasmonate/ethylene signaling pathway, mediated by a cell-surface receptor, PEPR1.	jasmonic acid	218-227	plant defensin 1.2	Arabidopsis thaliana	142-148
17566109-1	2007	AtPep1, a 23-aa peptide encoded by Arabidopsis PROPEP1, a member of a small, six-member gene family, activates expression of the defense gene PDF1.2 (encoding defensin) and its own precursor gene, PROPEP1, through the jasmonate/ethylene signaling pathway, mediated by a cell-surface receptor, PEPR1.	jasmonic acid	218-227	precursor of peptide 1	Arabidopsis thaliana	197-204
17566109-4	2007	The expression of PDF1.2 and PR-1 elicited by the peptides was blocked in mutant plants deficient in the jasmonate/ethylene and salicylate pathways, and in wild-type plants by treatment with diphenylene iodonium chloride, an inhibitor of hydrogen peroxide production.	jasmonic acid	105-114	plant defensin 1.2	Arabidopsis thaliana	18-24
17313369-5	2007	TOP Y605A was inhibited less efficiently by JA-2 {N-[1-(R,S)-carboxy-3-phenylpropyl]Ala-Aib-Tyr-p-aminobenzoate}, which suggested that the aromatic ring of Tyr605 was an important anchor for its interaction with wild-type TOP.	jasmonic acid	44-46	thimet oligopeptidase 1	Homo sapiens	222-225
17510065-7	2007	Genetic dissection of both wrky62 mutants and WRKY62-overexpressing plants indicated that WRKY62 down-regulates JA-responsive LOX2 and VSP2 expression.	jasmonic acid	112-114	WRKY DNA-binding protein 62	Arabidopsis thaliana	27-33
17544464-0	2007	Jasmonate biosynthesis in Arabidopsis thaliana requires peroxisomal beta-oxidation enzymes--additional proof by properties of pex6 and aim1.	jasmonic acid	0-9	peroxin 6	Arabidopsis thaliana	126-130
17510065-1	2007	Cytosolic NPR1 has been shown to be essential for the salicylic acid (SA)-mediated suppression of jasmonic acid (JA)-responsive gene expression.	jasmonic acid	98-111	regulatory protein (NPR1)	Arabidopsis thaliana	10-14
17510065-1	2007	Cytosolic NPR1 has been shown to be essential for the salicylic acid (SA)-mediated suppression of jasmonic acid (JA)-responsive gene expression.	jasmonic acid	113-115	regulatory protein (NPR1)	Arabidopsis thaliana	10-14
17510065-7	2007	Genetic dissection of both wrky62 mutants and WRKY62-overexpressing plants indicated that WRKY62 down-regulates JA-responsive LOX2 and VSP2 expression.	jasmonic acid	112-114	WRKY DNA-binding protein 62	Arabidopsis thaliana	46-52
17510065-2	2007	However, factors downstream of NPR1 in the cross-talk between SA and JA signaling are unclear.	jasmonic acid	69-71	regulatory protein (NPR1)	Arabidopsis thaliana	31-35
17544464-0	2007	Jasmonate biosynthesis in Arabidopsis thaliana requires peroxisomal beta-oxidation enzymes--additional proof by properties of pex6 and aim1.	jasmonic acid	0-9	Enoyl-CoA hydratase/isomerase family	Arabidopsis thaliana	135-139
17544464-4	2007	We analyzed JA biosynthesis in the Arabidopsis mutants pex6, affected in peroxisome biogenesis, and aim1, disrupted in fatty acid beta-oxidation.	jasmonic acid	12-14	peroxin 6	Arabidopsis thaliana	55-59
17510065-7	2007	Genetic dissection of both wrky62 mutants and WRKY62-overexpressing plants indicated that WRKY62 down-regulates JA-responsive LOX2 and VSP2 expression.	jasmonic acid	112-114	WRKY DNA-binding protein 62	Arabidopsis thaliana	90-96
17544464-8	2007	Decreased expression of JA-responsive genes, such as VSP1, VSP2, AtJRG21 and LOX2, following wounding in the mutants compared to the wild type reflects the reduced JA levels of the mutants.	jasmonic acid	24-26	vegetative storage protein 1	Arabidopsis thaliana	53-57
17510065-7	2007	Genetic dissection of both wrky62 mutants and WRKY62-overexpressing plants indicated that WRKY62 down-regulates JA-responsive LOX2 and VSP2 expression.	jasmonic acid	112-114	lipoxygenase 2	Arabidopsis thaliana	126-130
17544464-8	2007	Decreased expression of JA-responsive genes, such as VSP1, VSP2, AtJRG21 and LOX2, following wounding in the mutants compared to the wild type reflects the reduced JA levels of the mutants.	jasmonic acid	24-26	vegetative storage protein 2	Arabidopsis thaliana	59-63
17510065-7	2007	Genetic dissection of both wrky62 mutants and WRKY62-overexpressing plants indicated that WRKY62 down-regulates JA-responsive LOX2 and VSP2 expression.	jasmonic acid	112-114	vegetative storage protein 2	Arabidopsis thaliana	135-139
17510065-8	2007	Our results demonstrate that WRKY62 acts downstream of cytosolic NPR1 and negatively regulates JA-responsive gene expression, suggesting that WRKY62 may be involved in the SA-mediated suppression of JA signaling.	jasmonic acid	95-97	WRKY DNA-binding protein 62	Arabidopsis thaliana	29-35
17544464-8	2007	Decreased expression of JA-responsive genes, such as VSP1, VSP2, AtJRG21 and LOX2, following wounding in the mutants compared to the wild type reflects the reduced JA levels of the mutants.	jasmonic acid	24-26	jasmonate-regulated gene 21	Arabidopsis thaliana	65-72
17510065-8	2007	Our results demonstrate that WRKY62 acts downstream of cytosolic NPR1 and negatively regulates JA-responsive gene expression, suggesting that WRKY62 may be involved in the SA-mediated suppression of JA signaling.	jasmonic acid	95-97	regulatory protein (NPR1)	Arabidopsis thaliana	65-69
17544464-8	2007	Decreased expression of JA-responsive genes, such as VSP1, VSP2, AtJRG21 and LOX2, following wounding in the mutants compared to the wild type reflects the reduced JA levels of the mutants.	jasmonic acid	24-26	lipoxygenase 2	Arabidopsis thaliana	77-81
17544464-8	2007	Decreased expression of JA-responsive genes, such as VSP1, VSP2, AtJRG21 and LOX2, following wounding in the mutants compared to the wild type reflects the reduced JA levels of the mutants.	jasmonic acid	164-166	vegetative storage protein 1	Arabidopsis thaliana	53-57
17510065-8	2007	Our results demonstrate that WRKY62 acts downstream of cytosolic NPR1 and negatively regulates JA-responsive gene expression, suggesting that WRKY62 may be involved in the SA-mediated suppression of JA signaling.	jasmonic acid	95-97	WRKY DNA-binding protein 62	Arabidopsis thaliana	142-148
17544464-8	2007	Decreased expression of JA-responsive genes, such as VSP1, VSP2, AtJRG21 and LOX2, following wounding in the mutants compared to the wild type reflects the reduced JA levels of the mutants.	jasmonic acid	164-166	vegetative storage protein 2	Arabidopsis thaliana	59-63
17544464-8	2007	Decreased expression of JA-responsive genes, such as VSP1, VSP2, AtJRG21 and LOX2, following wounding in the mutants compared to the wild type reflects the reduced JA levels of the mutants.	jasmonic acid	164-166	jasmonate-regulated gene 21	Arabidopsis thaliana	65-72
17544464-8	2007	Decreased expression of JA-responsive genes, such as VSP1, VSP2, AtJRG21 and LOX2, following wounding in the mutants compared to the wild type reflects the reduced JA levels of the mutants.	jasmonic acid	164-166	lipoxygenase 2	Arabidopsis thaliana	77-81
17544464-10	2007	Furthermore an essential function of one of the two multifunctional proteins of fatty acid beta-oxidation (AIM1) for wound-induced JA formation is demonstrated for the first time.	jasmonic acid	131-133	Enoyl-CoA hydratase/isomerase family	Arabidopsis thaliana	107-111
17364223-8	2007	We also found that jasmonic acid (JA) induced AtBSMT1, which may contribute to an antagonistic effect on SA signaling pathways by depleting the SA pool in plants.	jasmonic acid	19-32	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein	Arabidopsis thaliana	46-53
17433310-6	2007	Jasmonic acid (JA) activated AtMPK1/AtMPK2 in the absence of wounding.	jasmonic acid	0-13	mitogen-activated protein kinase 1	Arabidopsis thaliana	29-35
17433310-6	2007	Jasmonic acid (JA) activated AtMPK1/AtMPK2 in the absence of wounding.	jasmonic acid	0-13	mitogen-activated protein kinase homolog 2	Arabidopsis thaliana	36-42
17433310-6	2007	Jasmonic acid (JA) activated AtMPK1/AtMPK2 in the absence of wounding.	jasmonic acid	15-17	mitogen-activated protein kinase 1	Arabidopsis thaliana	29-35
17433310-6	2007	Jasmonic acid (JA) activated AtMPK1/AtMPK2 in the absence of wounding.	jasmonic acid	15-17	mitogen-activated protein kinase homolog 2	Arabidopsis thaliana	36-42
17433310-7	2007	Wound and JA-induction of AtMPK1/2 kinase activity was not prevented in the JA-insensitive coi1 mutant.	jasmonic acid	10-12	mitogen-activated protein kinase 12	Arabidopsis thaliana	26-34
17143616-6	2007	Real-time PCR experiments suggested that the wound-induction of the AtPTR3 gene was abolished in the SA and JA signalling mutants.	jasmonic acid	108-110	peptide transporter 3	Arabidopsis thaliana	68-74
17506336-5	2007	Although MKK2-EE plants shared enhanced expression of genes encoding enzymes of ethylene (ET) and jasmonic acid (JA) synthesis, ET, JA, and salicylic acid (SA) levels did not differ dramatically from those of wild-type or mkk2-null plants under ambient growth conditions.	jasmonic acid	98-111	MAP kinase kinase 2	Arabidopsis thaliana	9-13
17506336-5	2007	Although MKK2-EE plants shared enhanced expression of genes encoding enzymes of ethylene (ET) and jasmonic acid (JA) synthesis, ET, JA, and salicylic acid (SA) levels did not differ dramatically from those of wild-type or mkk2-null plants under ambient growth conditions.	jasmonic acid	113-115	MAP kinase kinase 2	Arabidopsis thaliana	9-13
17506336-7	2007	tomato DC3000 infection, however, MKK2-EE plants showed reduced increases of JA and SA levels.	jasmonic acid	77-79	MAP kinase kinase 2	Arabidopsis thaliana	34-38
17364223-8	2007	We also found that jasmonic acid (JA) induced AtBSMT1, which may contribute to an antagonistic effect on SA signaling pathways by depleting the SA pool in plants.	jasmonic acid	34-36	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein	Arabidopsis thaliana	46-53
17253983-1	2007	In tobacco (Nicotiana tabacum), wounding causes rapid activation of two mitogen-activated protein kinases (MAPKs), wound-induced protein kinase (WIPK) and salicylic acid (SA)-induced protein kinase (SIPK), and the subsequent accumulation of jasmonic acid (JA).	jasmonic acid	241-254	mitogen-activated protein kinase 3-like	Nicotiana tabacum	115-143
17378430-3	2007	Early in the potato aphid (Macrosiphum euphorbiae)--tomato interactions, aphid feeding induces the expression of the jasmonic acid (JA)-regulated proteinase inhibitor genes, Pin1 and Pin2.	jasmonic acid	117-130	auxin efflux carrier component 9	Solanum lycopersicum	174-178
17378430-3	2007	Early in the potato aphid (Macrosiphum euphorbiae)--tomato interactions, aphid feeding induces the expression of the jasmonic acid (JA)-regulated proteinase inhibitor genes, Pin1 and Pin2.	jasmonic acid	117-130	auxin efflux carrier component 2	Solanum lycopersicum	183-187
17378430-3	2007	Early in the potato aphid (Macrosiphum euphorbiae)--tomato interactions, aphid feeding induces the expression of the jasmonic acid (JA)-regulated proteinase inhibitor genes, Pin1 and Pin2.	jasmonic acid	132-134	auxin efflux carrier component 2	Solanum lycopersicum	183-187
17965588-1	2007	The expression of the Arabidopsis gene WRKY70 is known to be antagonistically regulated by the salicylic acid (SA) and jasmonic acid (JA) signaling pathways.	jasmonic acid	119-132	WRKY DNA-binding protein 70	Arabidopsis thaliana	39-45
17965588-1	2007	The expression of the Arabidopsis gene WRKY70 is known to be antagonistically regulated by the salicylic acid (SA) and jasmonic acid (JA) signaling pathways.	jasmonic acid	134-136	WRKY DNA-binding protein 70	Arabidopsis thaliana	39-45
17369371-4	2007	We also show that JA negatively controls ATMYC2/JIN1 expression, based on quantitative RT-PCR and genetic analyses using gain-of-function and loss-of-function mutants of the MKK3-MPK6 cascade.	jasmonic acid	18-20	Basic helix-loop-helix (bHLH) DNA-binding family protein	Arabidopsis thaliana	41-47
17253983-1	2007	In tobacco (Nicotiana tabacum), wounding causes rapid activation of two mitogen-activated protein kinases (MAPKs), wound-induced protein kinase (WIPK) and salicylic acid (SA)-induced protein kinase (SIPK), and the subsequent accumulation of jasmonic acid (JA).	jasmonic acid	241-254	mitogen-activated protein kinase 3-like	Nicotiana tabacum	145-149
17369371-4	2007	We also show that JA negatively controls ATMYC2/JIN1 expression, based on quantitative RT-PCR and genetic analyses using gain-of-function and loss-of-function mutants of the MKK3-MPK6 cascade.	jasmonic acid	18-20	Basic helix-loop-helix (bHLH) DNA-binding family protein	Arabidopsis thaliana	48-52
17253983-1	2007	In tobacco (Nicotiana tabacum), wounding causes rapid activation of two mitogen-activated protein kinases (MAPKs), wound-induced protein kinase (WIPK) and salicylic acid (SA)-induced protein kinase (SIPK), and the subsequent accumulation of jasmonic acid (JA).	jasmonic acid	256-258	mitogen-activated protein kinase 3-like	Nicotiana tabacum	115-143
17369371-4	2007	We also show that JA negatively controls ATMYC2/JIN1 expression, based on quantitative RT-PCR and genetic analyses using gain-of-function and loss-of-function mutants of the MKK3-MPK6 cascade.	jasmonic acid	18-20	mitogen-activated protein kinase kinase 3	Arabidopsis thaliana	174-178
17253983-1	2007	In tobacco (Nicotiana tabacum), wounding causes rapid activation of two mitogen-activated protein kinases (MAPKs), wound-induced protein kinase (WIPK) and salicylic acid (SA)-induced protein kinase (SIPK), and the subsequent accumulation of jasmonic acid (JA).	jasmonic acid	256-258	mitogen-activated protein kinase 3-like	Nicotiana tabacum	145-149
17369371-5	2007	These results indicate that this kinase unit plays a key role in JA-dependent negative regulation of ATMYC2/JIN1 expression.	jasmonic acid	65-67	Basic helix-loop-helix (bHLH) DNA-binding family protein	Arabidopsis thaliana	101-107
17253983-6	2007	Wound-induced JA production was reduced compared with non-silenced plants in all of the WIPK-, SIPK- and WIPK/SIPK-silenced plants.	jasmonic acid	14-16	mitogen-activated protein kinase 3-like	Nicotiana tabacum	88-92
17369371-5	2007	These results indicate that this kinase unit plays a key role in JA-dependent negative regulation of ATMYC2/JIN1 expression.	jasmonic acid	65-67	Basic helix-loop-helix (bHLH) DNA-binding family protein	Arabidopsis thaliana	108-112
17253983-7	2007	Transgenic plants over-expressing NtMKP1, a gene encoding tobacco MAPK phosphatase, which inactivates WIPK and SIPK, also exhibited reduced JA production in response to wounding.	jasmonic acid	140-142	protein-tyrosine-phosphatase MKP1-like	Nicotiana tabacum	34-40
17253984-4	2007	We employed a genetic screen capable of detecting the misregulated activity of 13-lipoxygenase, which operates at the entry point of the jasmonate biosynthesis pathway.	jasmonic acid	137-146	lipoxygenase 1	Arabidopsis thaliana	82-94
17549642-7	2007	Jasmonates induced cytochrome c release and swelling in mitochondria isolated from cancer cells but not from normal ones.	jasmonic acid	0-10	cytochrome c, somatic	Homo sapiens	19-31
17172287-4	2007	Wound-induced JA accumulation was reduced in a mutant that is defective in ACX1 and was abolished in a mutant that is impaired in both ACX1 and its closely related paralog, ACX5.	jasmonic acid	14-16	acyl-CoA oxidase 1	Arabidopsis thaliana	75-79
17172287-4	2007	Wound-induced JA accumulation was reduced in a mutant that is defective in ACX1 and was abolished in a mutant that is impaired in both ACX1 and its closely related paralog, ACX5.	jasmonic acid	14-16	acyl-CoA oxidase 1	Arabidopsis thaliana	135-139
17172287-5	2007	The severe JA deficiency in acx1/5 double mutants was accompanied by decreased resistance to the leaf-eating insect Trichoplusia ni.	jasmonic acid	11-13	acyl-CoA oxidase 1	Arabidopsis thaliana	28-32
17172287-8	2007	Unexpectedly, acx1/5 plants accumulated JA in response to infection by the necrotrophic fungal pathogen Alternaria brassicicola.	jasmonic acid	40-42	acyl-CoA oxidase 1	Arabidopsis thaliana	14-18
17172287-9	2007	In contrast to mutants that are impaired in jasmonate perception or early steps of the JA biosynthetic pathway, acx1/5 plants maintained resistance to A. brassicicola infection.	jasmonic acid	87-89	acyl-CoA oxidase 1	Arabidopsis thaliana	112-116
17172287-10	2007	These results indicate that ACX1/5-mediated JA synthesis is essential for resistance to chewing insects and male reproductive function and further suggest that other ACX isozymes contribute to JA production in response to A. brassicicola challenge.	jasmonic acid	44-46	acyl-CoA oxidase 1	Arabidopsis thaliana	28-32
17172287-10	2007	These results indicate that ACX1/5-mediated JA synthesis is essential for resistance to chewing insects and male reproductive function and further suggest that other ACX isozymes contribute to JA production in response to A. brassicicola challenge.	jasmonic acid	193-195	acyl-CoA oxidase 1	Arabidopsis thaliana	28-32
17249424-3	2007	LeATL6 expression also was induced by elicitor treatment of jail-1 mutant tomato cells in which the jasmonic acid (JA)-mediated signaling pathway was impaired; however, JA-dependent expression of the basic PR-6 and TPI-1 genes that encode proteinase inhibitor II and I, respectively, was not induced in elicitor-treated jail-1 mutants.	jasmonic acid	169-171	proteinase inhibitor type-2 CEVI57	Solanum lycopersicum	239-268
17214894-7	2007	Analysis of stress-induced WRKY25 in the defense signaling mutants npr1, sid2, ein2 and coi1 further indicated that this gene is positively regulated by the salicylic acid (SA) signaling pathway and negatively regulated by the jasmonic acid signaling pathway.	jasmonic acid	227-240	WRKY DNA-binding protein 25	Arabidopsis thaliana	27-33
17210991-6	2007	Wound-induced accumulation of the jasmonic acid biosynthetic enzymes may thus commit the lipoxygenase pathway to jasmonic acid production in damaged plants.	jasmonic acid	34-47	probable linoleate 9S-lipoxygenase 5	Solanum tuberosum	89-101
17210991-6	2007	Wound-induced accumulation of the jasmonic acid biosynthetic enzymes may thus commit the lipoxygenase pathway to jasmonic acid production in damaged plants.	jasmonic acid	113-126	probable linoleate 9S-lipoxygenase 5	Solanum tuberosum	89-101
17114278-5	2007	Moreover, the expression of other ERF genes involved in defense and ET/jasmonic acid responses, such as ERF1 and AtERF2, depends on AtERF14 expression.	jasmonic acid	71-84	ethylene responsive element binding factor 1	Arabidopsis thaliana	104-108
17114278-5	2007	Moreover, the expression of other ERF genes involved in defense and ET/jasmonic acid responses, such as ERF1 and AtERF2, depends on AtERF14 expression.	jasmonic acid	71-84	ethylene responsive element binding factor 2	Arabidopsis thaliana	113-119
17114278-5	2007	Moreover, the expression of other ERF genes involved in defense and ET/jasmonic acid responses, such as ERF1 and AtERF2, depends on AtERF14 expression.	jasmonic acid	71-84	Ethylene-responsive element binding factor 14	Arabidopsis thaliana	132-139
16963437-7	2006	In response to wounding, opcl1 null mutants exhibited reduced levels of JA and hyperaccumulation of OPC-8:0.	jasmonic acid	72-74	OPC-8:0 CoA ligase1	Arabidopsis thaliana	25-30
16963437-10	2006	These findings establish a physiological role for OPCL1 in the activation of JA biosynthetic precursors in leaf peroxisomes, and further indicate that OPC-8:0 is a physiological substrate for the activation step.	jasmonic acid	77-79	OPC-8:0 CoA ligase1	Arabidopsis thaliana	50-55
17117558-1	2006	The rice P0491E01 gene shares high similarity in amino acid sequence with Arabidopsis gene AtDAD1 (DEFECTIVE IN ANTHER DEHISCENCE1) which plays a key role in the biosynthesis of jasmonic acid.	jasmonic acid	178-191	alpha/beta-Hydrolases superfamily protein	Arabidopsis thaliana	91-97
19517001-2	2006	The R2R3-MYB transcription factor gene AtMYB102 has been shown to respond to salt stress, ABA, JA, and wounding, suggesting that AtMYB102 plays a role in the response of plants to dehydration after wounding.	jasmonic acid	95-97	MYB-like 102	Arabidopsis thaliana	39-47
19517001-2	2006	The R2R3-MYB transcription factor gene AtMYB102 has been shown to respond to salt stress, ABA, JA, and wounding, suggesting that AtMYB102 plays a role in the response of plants to dehydration after wounding.	jasmonic acid	95-97	MYB-like 102	Arabidopsis thaliana	129-137
16983071-1	2006	12-Oxophytodienoate reductase (OPR) 3, a homologue of old yellow enzyme (OYE), catalyzes the reduction of 9S,13S-12-oxophytodienoate to the corresponding cyclopentanone, which is subsequently converted to the plant hormone jasmonic acid (JA).	jasmonic acid	223-236	12-oxophytodienoate reductase 1	Solanum lycopersicum	0-29
16644052-6	2006	The induction of HSP101 mRNA was also correlated with an increase in its protein levels and was independent of defense-related signaling pathways involving salicylic acid, jasmonic acid, or ethylene.	jasmonic acid	172-185	heat shock protein 101	Arabidopsis thaliana	17-23
16983071-1	2006	12-Oxophytodienoate reductase (OPR) 3, a homologue of old yellow enzyme (OYE), catalyzes the reduction of 9S,13S-12-oxophytodienoate to the corresponding cyclopentanone, which is subsequently converted to the plant hormone jasmonic acid (JA).	jasmonic acid	223-236	12-oxophytodienoate reductase 1	Solanum lycopersicum	31-34
16983071-1	2006	12-Oxophytodienoate reductase (OPR) 3, a homologue of old yellow enzyme (OYE), catalyzes the reduction of 9S,13S-12-oxophytodienoate to the corresponding cyclopentanone, which is subsequently converted to the plant hormone jasmonic acid (JA).	jasmonic acid	238-240	12-oxophytodienoate reductase 1	Solanum lycopersicum	0-29
16983071-1	2006	12-Oxophytodienoate reductase (OPR) 3, a homologue of old yellow enzyme (OYE), catalyzes the reduction of 9S,13S-12-oxophytodienoate to the corresponding cyclopentanone, which is subsequently converted to the plant hormone jasmonic acid (JA).	jasmonic acid	238-240	12-oxophytodienoate reductase 1	Solanum lycopersicum	31-34
16798948-4	2006	Second, the induction of JA-responsive genes by bestatin requires the COI1-dependent JA-signaling pathway, but does not depend strictly on JA biosynthesis.	jasmonic acid	25-27	RNI-like superfamily protein	Arabidopsis thaliana	70-74
16930646-2	2006	A gene sequence in barley that earlier was characterized as a jasmonate-induced O-methyltransferase (MT) (EC 2.1.1.6, GenBank accession U54767) was here found to be absent in some barley cultivars and breeding lines that all lacked gramine.	jasmonic acid	62-71	LOC548265	Hordeum vulgare	80-99
16930646-2	2006	A gene sequence in barley that earlier was characterized as a jasmonate-induced O-methyltransferase (MT) (EC 2.1.1.6, GenBank accession U54767) was here found to be absent in some barley cultivars and breeding lines that all lacked gramine.	jasmonic acid	62-71	LOC548265	Hordeum vulgare	101-103
16778014-6	2006	In contrast, responses at the site of pathogen attack, including increases in the levels of the defense signals SA and jasmonic acid, camalexin accumulation, and expression of various defense genes, were induced in a similar manner in both fmo1 mutant and wild-type plants.	jasmonic acid	119-132	flavin-dependent monooxygenase 1	Arabidopsis thaliana	240-244
16813576-3	2006	Both SA-repressing and ET/JA-(co)activating functions depend on MPK4 kinase activity and involve the defense regulators EDS1 and PAD4, as mutations in these genes suppress de-repression of the SA pathway and suppress the block of the ET/JA pathway in mpk4.	jasmonic acid	26-28	MAP kinase 4	Arabidopsis thaliana	64-68
16813576-3	2006	Both SA-repressing and ET/JA-(co)activating functions depend on MPK4 kinase activity and involve the defense regulators EDS1 and PAD4, as mutations in these genes suppress de-repression of the SA pathway and suppress the block of the ET/JA pathway in mpk4.	jasmonic acid	26-28	alpha/beta-Hydrolases superfamily protein	Arabidopsis thaliana	120-124
16813576-3	2006	Both SA-repressing and ET/JA-(co)activating functions depend on MPK4 kinase activity and involve the defense regulators EDS1 and PAD4, as mutations in these genes suppress de-repression of the SA pathway and suppress the block of the ET/JA pathway in mpk4.	jasmonic acid	26-28	alpha/beta-Hydrolases superfamily protein	Arabidopsis thaliana	129-133
16813576-3	2006	Both SA-repressing and ET/JA-(co)activating functions depend on MPK4 kinase activity and involve the defense regulators EDS1 and PAD4, as mutations in these genes suppress de-repression of the SA pathway and suppress the block of the ET/JA pathway in mpk4.	jasmonic acid	26-28	MAP kinase 4	Arabidopsis thaliana	251-255
16813576-3	2006	Both SA-repressing and ET/JA-(co)activating functions depend on MPK4 kinase activity and involve the defense regulators EDS1 and PAD4, as mutations in these genes suppress de-repression of the SA pathway and suppress the block of the ET/JA pathway in mpk4.	jasmonic acid	237-239	MAP kinase 4	Arabidopsis thaliana	64-68
16813576-3	2006	Both SA-repressing and ET/JA-(co)activating functions depend on MPK4 kinase activity and involve the defense regulators EDS1 and PAD4, as mutations in these genes suppress de-repression of the SA pathway and suppress the block of the ET/JA pathway in mpk4.	jasmonic acid	237-239	alpha/beta-Hydrolases superfamily protein	Arabidopsis thaliana	120-124
16813576-3	2006	Both SA-repressing and ET/JA-(co)activating functions depend on MPK4 kinase activity and involve the defense regulators EDS1 and PAD4, as mutations in these genes suppress de-repression of the SA pathway and suppress the block of the ET/JA pathway in mpk4.	jasmonic acid	237-239	alpha/beta-Hydrolases superfamily protein	Arabidopsis thaliana	129-133
16813576-4	2006	EDS1/PAD4 thus affect SA-ET/JA signal antagonism as activators of SA but as repressors of ET/JA defenses, and MPK4 negatively regulates both of these functions.	jasmonic acid	28-30	alpha/beta-Hydrolases superfamily protein	Arabidopsis thaliana	0-4
16813576-4	2006	EDS1/PAD4 thus affect SA-ET/JA signal antagonism as activators of SA but as repressors of ET/JA defenses, and MPK4 negatively regulates both of these functions.	jasmonic acid	28-30	alpha/beta-Hydrolases superfamily protein	Arabidopsis thaliana	5-9
16813576-4	2006	EDS1/PAD4 thus affect SA-ET/JA signal antagonism as activators of SA but as repressors of ET/JA defenses, and MPK4 negatively regulates both of these functions.	jasmonic acid	93-95	alpha/beta-Hydrolases superfamily protein	Arabidopsis thaliana	0-4
16813576-4	2006	EDS1/PAD4 thus affect SA-ET/JA signal antagonism as activators of SA but as repressors of ET/JA defenses, and MPK4 negatively regulates both of these functions.	jasmonic acid	93-95	alpha/beta-Hydrolases superfamily protein	Arabidopsis thaliana	5-9
16798948-4	2006	Second, the induction of JA-responsive genes by bestatin requires the COI1-dependent JA-signaling pathway, but does not depend strictly on JA biosynthesis.	jasmonic acid	85-87	RNI-like superfamily protein	Arabidopsis thaliana	70-74
16813576-0	2006	Arabidopsis MAP kinase 4 regulates salicylic acid- and jasmonic acid/ethylene-dependent responses via EDS1 and PAD4.	jasmonic acid	55-68	alpha/beta-Hydrolases superfamily protein	Arabidopsis thaliana	102-106
16813576-0	2006	Arabidopsis MAP kinase 4 regulates salicylic acid- and jasmonic acid/ethylene-dependent responses via EDS1 and PAD4.	jasmonic acid	55-68	alpha/beta-Hydrolases superfamily protein	Arabidopsis thaliana	111-115
16813576-1	2006	Arabidopsis MPK4 has been implicated in plant defense regulation because mpk4 knockout plants exhibit constitutive activation of salicylic acid (SA)-dependent defenses, but fail to induce jasmonic acid (JA) defense marker genes in response to JA.	jasmonic acid	188-201	MAP kinase 4	Arabidopsis thaliana	12-16
16813576-1	2006	Arabidopsis MPK4 has been implicated in plant defense regulation because mpk4 knockout plants exhibit constitutive activation of salicylic acid (SA)-dependent defenses, but fail to induce jasmonic acid (JA) defense marker genes in response to JA.	jasmonic acid	203-205	MAP kinase 4	Arabidopsis thaliana	12-16
16790031-5	2006	Furthermore, the levels of wound-induced enzymatic activation of both salicylic acid-induced protein kinase (SIPK) and wound-induced protein kinase (WIPK) and wound-induced accumulation of JA were reduced in the WRK suppressed lines in comparison with a control line.	jasmonic acid	189-191	mitogen-activated protein kinase 3-like	Nicotiana tabacum	149-153
16708291-0	2006	Influx of extracellular Ca2+ involved in jasmonic-acid-induced elevation of [Ca2+]cyt and JR1 expression in Arabidopsis thaliana.	jasmonic acid	41-54	Mannose-binding lectin superfamily protein	Arabidopsis thaliana	90-93
16708291-6	2006	Furthermore, Nif repressed JA-induced gene expression of JR1 but verapamil did not.	jasmonic acid	27-29	Mannose-binding lectin superfamily protein	Arabidopsis thaliana	57-60
16708291-8	2006	W-7 [N-(6-aminohexyl)-5-chloro-1-naphthalenesulfonamide], an antagonist of calmodulin (CaM), blocked the JA induction of JR1 expression while W-5 [N-(6-aminohexyl)-1-naphthalenesulfonamide], its inactive antagonist, had no apparent effect.	jasmonic acid	105-107	Mannose-binding lectin superfamily protein	Arabidopsis thaliana	121-124
16824181-2	2006	The edr3-mediated disease resistance and cell death phenotypes were dependent on salicylic acid signaling, but independent of ethylene and jasmonic acid signaling.	jasmonic acid	139-152	DYNAMIN-like 1E	Arabidopsis thaliana	4-8
16362327-7	2006	ZmLrk-1 expression is not induced after treatment with salicylic acid, jasmonic acid or wounding, but it clearly increases after infection of germinating seeds with Fusarium oxysporum.	jasmonic acid	71-84	Ser/Thr receptor-like kinase 1	Zea mays	0-7
16805730-5	2006	Here we show that jasmonic acid also inhibits the plant"s responses to rhizobial bacteria, with direct effects on Nod factor-induced calcium spiking.	jasmonic acid	18-31	atrophin 1	Homo sapiens	114-117
16805730-7	2006	This effect of jasmonic acid is amplified in the ethylene-insensitive mutant skl, indicating an antagonistic interaction between these two hormones for regulation of Nod factor signaling.	jasmonic acid	15-28	atrophin 1	Homo sapiens	166-169
16805730-8	2006	The rapidity of the effects of ethylene and jasmonic acid on Nod factor signaling suggests direct crosstalk between these three signal transduction pathways.	jasmonic acid	44-57	atrophin 1	Homo sapiens	61-64
16623907-3	2006	Our studies have identified WRKY70 as a node of convergence for integrating salicylic acid (SA)- and jasmonic acid (JA)-mediated signaling events during plant response to bacterial pathogens.	jasmonic acid	101-114	WRKY DNA-binding protein 70	Arabidopsis thaliana	28-34
16623907-3	2006	Our studies have identified WRKY70 as a node of convergence for integrating salicylic acid (SA)- and jasmonic acid (JA)-mediated signaling events during plant response to bacterial pathogens.	jasmonic acid	116-118	WRKY DNA-binding protein 70	Arabidopsis thaliana	28-34
16623907-5	2006	Gain or loss of WRKY70 function causes opposite effects on JA-mediated resistance to A. brassicicola and the SA-mediated resistance to E. cichoracearum.	jasmonic acid	59-61	WRKY DNA-binding protein 70	Arabidopsis thaliana	16-22
16623907-10	2006	The results indicate that WRKY70 has a pivotal role in determining the balance between SA-dependent and JA-dependent defense pathways.	jasmonic acid	104-106	WRKY DNA-binding protein 70	Arabidopsis thaliana	26-32
16814558-8	2006	StMPK1 mRNA levels also increased in potato tuber after 24 h of treatment with jasmonic acid (JA) and abscicic acid (ABA), but not in response to ethylene or salicylic acid.	jasmonic acid	79-92	mitogen-activated protein kinase homolog NTF4-like	Solanum tuberosum	0-6
16814558-8	2006	StMPK1 mRNA levels also increased in potato tuber after 24 h of treatment with jasmonic acid (JA) and abscicic acid (ABA), but not in response to ethylene or salicylic acid.	jasmonic acid	94-96	mitogen-activated protein kinase homolog NTF4-like	Solanum tuberosum	0-6
16457823-1	2006	Four AP2/EREBP genes encoding putative ethylene-responsive element binding factor (ERF)/AP2 domains were cloned from Brassica napus, and these genes could be induced by low temperature, ethylene, drought, high salinity, abscisic acid and jasmonate treatments.	jasmonic acid	238-247	floral homeotic protein APETALA 2	Brassica napus	5-8
16415067-7	2006	These results suggest that the ozone-induced expression of FAD7 gene requires SA, but not ethylene, JA, NPR1 and SID2.	jasmonic acid	100-102	fatty acid desaturase 7	Arabidopsis thaliana	59-63
16457823-1	2006	Four AP2/EREBP genes encoding putative ethylene-responsive element binding factor (ERF)/AP2 domains were cloned from Brassica napus, and these genes could be induced by low temperature, ethylene, drought, high salinity, abscisic acid and jasmonate treatments.	jasmonic acid	238-247	floral homeotic protein APETALA 2	Brassica napus	88-91
17005920-8	2006	ZmLOX10 was preferentially expressed in leaves and was induced in response to wounding, cold stress, defence-related hormones jasmonic acid (JA), salicylic acid (SA), and abscisic acid (ABA), and inoculation with an avirulent strain of Cochliobolus carbonum.	jasmonic acid	126-139	linoleate 13S-lipoxygenase10	Zea mays	0-7
16531464-6	2006	The stimulatory effects of MeJA and JA were also diminished in ethylene-insensitive mutants etr1-1 and etr1-3.	jasmonic acid	29-31	Signal transduction histidine kinase, hybrid-type, ethylene sensor	Arabidopsis thaliana	92-98
16531464-6	2006	The stimulatory effects of MeJA and JA were also diminished in ethylene-insensitive mutants etr1-1 and etr1-3.	jasmonic acid	29-31	Signal transduction histidine kinase, hybrid-type, ethylene sensor	Arabidopsis thaliana	103-109
17005920-8	2006	ZmLOX10 was preferentially expressed in leaves and was induced in response to wounding, cold stress, defence-related hormones jasmonic acid (JA), salicylic acid (SA), and abscisic acid (ABA), and inoculation with an avirulent strain of Cochliobolus carbonum.	jasmonic acid	141-143	linoleate 13S-lipoxygenase10	Zea mays	0-7
16207701-11	2006	Several proteins with diverse functions outside primary carbon metabolism, such as the isomerase ROC4, lipoxygenase 2 involved in jasmonic acid biosynthesis, and a carbonic anhydrase (CA1), were surprisingly abundant in the range of 0.75-1.5% of the total stromal mass.	jasmonic acid	130-143	rotamase CYP 4	Arabidopsis thaliana	97-101
16893977-0	2006	The presence of jasmonate-inducible lectin genes in some but not all Nicotiana species explains a marked intragenus difference in plant responses to hormone treatment.	jasmonic acid	16-25	F-box protein PP2-B11-like	Nicotiana tabacum	36-42
16893977-2	2006	To check whether, and if so to what extent, the specific induction of this lectin applies to related species, a collection of 19 Nicotiana species--covering 12 Nicotiana sections and eight Nicotiana tabacum cultivars--was screened for their capability to synthesize the jasmonate-inducible lectin.	jasmonic acid	270-279	F-box protein PP2-B11-like	Nicotiana tabacum	75-81
16893977-4	2006	Remarkably, all allotetraploid cultivars of the N. tabacum L. species tested express the lectin after jasmonate treatment.	jasmonic acid	102-111	F-box protein PP2-B11-like	Nicotiana tabacum	89-95
16207701-11	2006	Several proteins with diverse functions outside primary carbon metabolism, such as the isomerase ROC4, lipoxygenase 2 involved in jasmonic acid biosynthesis, and a carbonic anhydrase (CA1), were surprisingly abundant in the range of 0.75-1.5% of the total stromal mass.	jasmonic acid	130-143	lipoxygenase 2	Arabidopsis thaliana	103-117
16435264-10	2006	NPR1 has emerged as a critical modulator of cross-talk between the SA and JA signal and is thought to aid in fine tuning defence responses specific to the encountered attacker.	jasmonic acid	74-76	natriuretic peptide receptor 1	Homo sapiens	0-4
16207701-11	2006	Several proteins with diverse functions outside primary carbon metabolism, such as the isomerase ROC4, lipoxygenase 2 involved in jasmonic acid biosynthesis, and a carbonic anhydrase (CA1), were surprisingly abundant in the range of 0.75-1.5% of the total stromal mass.	jasmonic acid	130-143	carbonic anhydrase 1	Arabidopsis thaliana	184-187
16325410-5	2005	Expression analysis of SEN1 in a number of defence signalling mutants indicated that activation of this gene by pathogen occurs predominantly via the salicylic and jasmonic acid signalling pathways, involving the functions of EDS5, NPR1 and JAR1.	jasmonic acid	164-177	splicing endonuclease 1	Arabidopsis thaliana	23-27
16262714-6	2005	We confirmed that JA induces the accumulation of ascorbate, glutathione and cysteine and increases the activity of dehydroascorbate reductase, an enzyme in the ascorbate recycling pathway.	jasmonic acid	18-20	dehydroascorbate reductase	Arabidopsis thaliana	115-141
16306139-2	2005	Our previous work with the Arabidopsis (Arabidopsis thaliana) ssi2/fab2 mutant and its suppressors demonstrated that a balance between glycerol-3-phosphate (G3P) and 18:1 levels is critical for the regulation of salicylic acid (SA)- and jasmonic acid-mediated defense signaling in the plant.	jasmonic acid	237-250	Plant stearoyl-acyl-carrier-protein desaturase family protein	Arabidopsis thaliana	62-66
16306139-2	2005	Our previous work with the Arabidopsis (Arabidopsis thaliana) ssi2/fab2 mutant and its suppressors demonstrated that a balance between glycerol-3-phosphate (G3P) and 18:1 levels is critical for the regulation of salicylic acid (SA)- and jasmonic acid-mediated defense signaling in the plant.	jasmonic acid	237-250	Plant stearoyl-acyl-carrier-protein desaturase family protein	Arabidopsis thaliana	67-71
16306139-5	2005	However, ssi2-triggered defects in the jasmonic acid pathway, morphology, and cell death phenotypes are independent of the EDS1, EDS5, PAD4, NDR1, SID2, FAD3, FAD4, FAD5, DGD1, FAD7, and FAD7 FAD8 genes.	jasmonic acid	39-52	Plant stearoyl-acyl-carrier-protein desaturase family protein	Arabidopsis thaliana	9-13
16325410-5	2005	Expression analysis of SEN1 in a number of defence signalling mutants indicated that activation of this gene by pathogen occurs predominantly via the salicylic and jasmonic acid signalling pathways, involving the functions of EDS5, NPR1 and JAR1.	jasmonic acid	164-177	MATE efflux family protein	Arabidopsis thaliana	226-230
16325410-5	2005	Expression analysis of SEN1 in a number of defence signalling mutants indicated that activation of this gene by pathogen occurs predominantly via the salicylic and jasmonic acid signalling pathways, involving the functions of EDS5, NPR1 and JAR1.	jasmonic acid	164-177	regulatory protein (NPR1)	Arabidopsis thaliana	232-236
16325410-5	2005	Expression analysis of SEN1 in a number of defence signalling mutants indicated that activation of this gene by pathogen occurs predominantly via the salicylic and jasmonic acid signalling pathways, involving the functions of EDS5, NPR1 and JAR1.	jasmonic acid	164-177	Auxin-responsive GH3 family protein	Arabidopsis thaliana	241-245
16027369-8	2005	Furthermore, N-terminal CDPK2 signaling triggered enhanced levels of the phytohormones jasmonic acid, 12-oxo-phytodienoic acid, and ethylene but not salicylic acid.	jasmonic acid	87-100	calcium-dependent protein kinase 1-like	Nicotiana tabacum	24-29
16121004-2	2005	These early signaling events may trigger a number of responses through salicylate, jasmonate, and ethylene signaling pathways, activating the defense responsive genes, such as PR1, BFL2.	jasmonic acid	83-92	transmembrane protein 37	Homo sapiens	176-179
16107481-0	2005	Auxin response factors ARF6 and ARF8 promote jasmonic acid production and flower maturation.	jasmonic acid	45-58	auxin response factor 6	Arabidopsis thaliana	23-27
16107481-0	2005	Auxin response factors ARF6 and ARF8 promote jasmonic acid production and flower maturation.	jasmonic acid	45-58	auxin response factor 8	Arabidopsis thaliana	32-36
16247560-8	2005	In contrast to these two genes, transcript levels of ZmOPR6 and ZmOPR7 and/or ZmOPR8 are highly induced by wounding or treatments with the wound-associated signaling molecules JA, ethylene and abscisic acid.	jasmonic acid	176-178	12-oxophytodienoate reductase6	Zea mays	53-59
16247560-8	2005	In contrast to these two genes, transcript levels of ZmOPR6 and ZmOPR7 and/or ZmOPR8 are highly induced by wounding or treatments with the wound-associated signaling molecules JA, ethylene and abscisic acid.	jasmonic acid	176-178	12-oxophytodienoate reductase7	Zea mays	64-70
16247560-8	2005	In contrast to these two genes, transcript levels of ZmOPR6 and ZmOPR7 and/or ZmOPR8 are highly induced by wounding or treatments with the wound-associated signaling molecules JA, ethylene and abscisic acid.	jasmonic acid	176-178	12-oxophytodienoate reductase8	Zea mays	78-84
16176083-5	2005	As a cross-talk point of a variety of defense signaling pathways, probably through direct or indirect interacting with some WRKY TFs and a NPR1-like protein NPR4, NPR1 is essential in balancing salicylic acid- and jasmonic acid- dependent signal transduction pathways, which is achieved through an unknown mechanism in the cytosol.	jasmonic acid	214-227	regulatory protein (NPR1)	Arabidopsis thaliana	139-143
16021335-1	2005	The Arabidopsis gene COI1 is required for jasmonic acid (JA)-induced growth inhibition, resistance to insect herbivory, and resistance to pathogens.	jasmonic acid	42-55	RNI-like superfamily protein	Arabidopsis thaliana	21-25
16021335-1	2005	The Arabidopsis gene COI1 is required for jasmonic acid (JA)-induced growth inhibition, resistance to insect herbivory, and resistance to pathogens.	jasmonic acid	57-59	RNI-like superfamily protein	Arabidopsis thaliana	21-25
16021341-6	2005	The expression of AtERF4 can be induced by ethylene, jasmonic acid, and abscisic acid (ABA).	jasmonic acid	53-66	ethylene responsive element binding factor 4	Arabidopsis thaliana	18-24
16176083-5	2005	As a cross-talk point of a variety of defense signaling pathways, probably through direct or indirect interacting with some WRKY TFs and a NPR1-like protein NPR4, NPR1 is essential in balancing salicylic acid- and jasmonic acid- dependent signal transduction pathways, which is achieved through an unknown mechanism in the cytosol.	jasmonic acid	214-227	NPR1-like protein 4	Arabidopsis thaliana	157-161
16176083-5	2005	As a cross-talk point of a variety of defense signaling pathways, probably through direct or indirect interacting with some WRKY TFs and a NPR1-like protein NPR4, NPR1 is essential in balancing salicylic acid- and jasmonic acid- dependent signal transduction pathways, which is achieved through an unknown mechanism in the cytosol.	jasmonic acid	214-227	regulatory protein (NPR1)	Arabidopsis thaliana	163-167
15829513-8	2005	Applied jasmonic acid activated the expression of WPK1, while ethylene, salicylic acid and abscisic acid had no such effect.	jasmonic acid	8-21	wound and phytochrome signaling involved receptor like kinase	Zea mays	50-54
15923348-10	2005	These studies revealed that the resistance signaling to necrotrophic infection in ocp3 is fully dependent on appropriate perception of jasmonic acid through COI1 and does not require SA or ethylene perception through NPR1 or EIN2, respectively.	jasmonic acid	135-148	overexpressor of cationic peroxidase 3	Arabidopsis thaliana	82-86
15923348-10	2005	These studies revealed that the resistance signaling to necrotrophic infection in ocp3 is fully dependent on appropriate perception of jasmonic acid through COI1 and does not require SA or ethylene perception through NPR1 or EIN2, respectively.	jasmonic acid	135-148	RNI-like superfamily protein	Arabidopsis thaliana	157-161
15923349-3	2005	Arabidopsis thaliana ZBF1 encodes AtMYC2/JIN1, a basic helix-loop-helix transcription factor, which has recently been shown to be involved in abscisic acid (ABA), jasmonic acid (JA), and jasmonate-ethylene signaling pathways.	jasmonic acid	163-176	Basic helix-loop-helix (bHLH) DNA-binding family protein	Arabidopsis thaliana	21-25
15923349-3	2005	Arabidopsis thaliana ZBF1 encodes AtMYC2/JIN1, a basic helix-loop-helix transcription factor, which has recently been shown to be involved in abscisic acid (ABA), jasmonic acid (JA), and jasmonate-ethylene signaling pathways.	jasmonic acid	163-176	Basic helix-loop-helix (bHLH) DNA-binding family protein	Arabidopsis thaliana	34-40
15923349-3	2005	Arabidopsis thaliana ZBF1 encodes AtMYC2/JIN1, a basic helix-loop-helix transcription factor, which has recently been shown to be involved in abscisic acid (ABA), jasmonic acid (JA), and jasmonate-ethylene signaling pathways.	jasmonic acid	163-176	Basic helix-loop-helix (bHLH) DNA-binding family protein	Arabidopsis thaliana	41-45
15923349-3	2005	Arabidopsis thaliana ZBF1 encodes AtMYC2/JIN1, a basic helix-loop-helix transcription factor, which has recently been shown to be involved in abscisic acid (ABA), jasmonic acid (JA), and jasmonate-ethylene signaling pathways.	jasmonic acid	178-180	Basic helix-loop-helix (bHLH) DNA-binding family protein	Arabidopsis thaliana	21-25
15923349-3	2005	Arabidopsis thaliana ZBF1 encodes AtMYC2/JIN1, a basic helix-loop-helix transcription factor, which has recently been shown to be involved in abscisic acid (ABA), jasmonic acid (JA), and jasmonate-ethylene signaling pathways.	jasmonic acid	178-180	Basic helix-loop-helix (bHLH) DNA-binding family protein	Arabidopsis thaliana	34-40
15923349-3	2005	Arabidopsis thaliana ZBF1 encodes AtMYC2/JIN1, a basic helix-loop-helix transcription factor, which has recently been shown to be involved in abscisic acid (ABA), jasmonic acid (JA), and jasmonate-ethylene signaling pathways.	jasmonic acid	178-180	Basic helix-loop-helix (bHLH) DNA-binding family protein	Arabidopsis thaliana	41-45
15923349-3	2005	Arabidopsis thaliana ZBF1 encodes AtMYC2/JIN1, a basic helix-loop-helix transcription factor, which has recently been shown to be involved in abscisic acid (ABA), jasmonic acid (JA), and jasmonate-ethylene signaling pathways.	jasmonic acid	187-196	Basic helix-loop-helix (bHLH) DNA-binding family protein	Arabidopsis thaliana	21-25
15923349-3	2005	Arabidopsis thaliana ZBF1 encodes AtMYC2/JIN1, a basic helix-loop-helix transcription factor, which has recently been shown to be involved in abscisic acid (ABA), jasmonic acid (JA), and jasmonate-ethylene signaling pathways.	jasmonic acid	187-196	Basic helix-loop-helix (bHLH) DNA-binding family protein	Arabidopsis thaliana	34-40
15923349-3	2005	Arabidopsis thaliana ZBF1 encodes AtMYC2/JIN1, a basic helix-loop-helix transcription factor, which has recently been shown to be involved in abscisic acid (ABA), jasmonic acid (JA), and jasmonate-ethylene signaling pathways.	jasmonic acid	187-196	Basic helix-loop-helix (bHLH) DNA-binding family protein	Arabidopsis thaliana	41-45
15923349-7	2005	Our results further demonstrate that atmyc2 mutants have compromised sensitivity to ABA- and JA-mediated responses.	jasmonic acid	93-95	Basic helix-loop-helix (bHLH) DNA-binding family protein	Arabidopsis thaliana	37-43
16036342-6	2005	The activation of 9 and 13-LOX, using different timing, leads to the formation of LOOH with a subsequent generation of jasmonates and IAA as highlighted by the addition on the potato tuber slices of salicylhydroxamic acid (SHAM), an inhibitor of LOX activity.	jasmonic acid	119-129	linoleate 9S-lipoxygenase 2	Solanum tuberosum	27-30
15829513-9	2005	These results strongly suggested that WPK1 is a component of the jasmonate-mediated signaling that participates in both wound-induced defensive and phytochrome-mediated photomorphogenetic responses.	jasmonic acid	65-74	wound and phytochrome signaling involved receptor like kinase	Zea mays	38-42
15860010-7	2005	We also demonstrate that ax6 enhances the effect of coi1 on JA responses, implying a genetic interaction between COI1 and AtCUL1 in JA signaling.	jasmonic acid	60-62	RNI-like superfamily protein	Arabidopsis thaliana	52-56
15923339-4	2005	Blocked JA signaling in coronatine-insensitive (coi1) and enhanced expression of SA-signaled disease resistance in hypersensitive response-like (hrl1) mutants reduced constitutive GS concentrations, while blocking SA signaling at the mediator protein npr1 mutant (NPR) increased them.	jasmonic acid	8-10	RNI-like superfamily protein	Arabidopsis thaliana	48-52
15860010-7	2005	We also demonstrate that ax6 enhances the effect of coi1 on JA responses, implying a genetic interaction between COI1 and AtCUL1 in JA signaling.	jasmonic acid	60-62	cullin 1	Arabidopsis thaliana	122-128
15860010-7	2005	We also demonstrate that ax6 enhances the effect of coi1 on JA responses, implying a genetic interaction between COI1 and AtCUL1 in JA signaling.	jasmonic acid	132-134	RNI-like superfamily protein	Arabidopsis thaliana	113-117
15860010-7	2005	We also demonstrate that ax6 enhances the effect of coi1 on JA responses, implying a genetic interaction between COI1 and AtCUL1 in JA signaling.	jasmonic acid	132-134	cullin 1	Arabidopsis thaliana	122-128
15773856-6	2005	In contrast, NDR1, RAR1 and PBS3 that are required for function of certain NB-LRR R genes, and COI1 and EIN2 that operate, respectively, in the jasmonic acid and ethylene signalling pathways, do not contribute to RPW8.1 and RPW8.2-mediated resistance.	jasmonic acid	144-157	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family	Arabidopsis thaliana	13-17
15828688-3	2005	The altered basal resistance to these pathogens in the ssi2 mutant plant is accompanied by the constitutive accumulation of elevated salicylic acid (SA) level and expression of the pathogenesis-related 1 (PR1) gene, the inability of jasmonic acid (JA) to activate expression of the defensin gene, PDF1.2, and the spontaneous death of cells.	jasmonic acid	233-246	Plant stearoyl-acyl-carrier-protein desaturase family protein	Arabidopsis thaliana	55-59
15828688-3	2005	The altered basal resistance to these pathogens in the ssi2 mutant plant is accompanied by the constitutive accumulation of elevated salicylic acid (SA) level and expression of the pathogenesis-related 1 (PR1) gene, the inability of jasmonic acid (JA) to activate expression of the defensin gene, PDF1.2, and the spontaneous death of cells.	jasmonic acid	248-250	Plant stearoyl-acyl-carrier-protein desaturase family protein	Arabidopsis thaliana	55-59
15677481-4	2005	This study uncovered a significant activity of At4g05160 with medium-chain fatty acids, medium-chain fatty acids carrying a phenyl substitution, long-chain fatty acids, as well as the jasmonic acid precursors 12-oxo-phytodienoic acid and 3-oxo-2-(2"-pentenyl)-cyclopentane-1-hexanoic acid.	jasmonic acid	184-197	AMP-dependent synthetase and ligase family protein	Arabidopsis thaliana	47-56
15677481-7	2005	Collectively, these data demonstrate that At4g05160 and At5g63380 have the capacity to contribute to jasmonic acid biosynthesis by initiating the beta-oxidative chain shortening of its precursors.	jasmonic acid	101-114	AMP-dependent synthetase and ligase family protein	Arabidopsis thaliana	42-51
15677481-7	2005	Collectively, these data demonstrate that At4g05160 and At5g63380 have the capacity to contribute to jasmonic acid biosynthesis by initiating the beta-oxidative chain shortening of its precursors.	jasmonic acid	101-114	AMP-dependent synthetase and ligase family protein	Arabidopsis thaliana	56-65
15773856-6	2005	In contrast, NDR1, RAR1 and PBS3 that are required for function of certain NB-LRR R genes, and COI1 and EIN2 that operate, respectively, in the jasmonic acid and ethylene signalling pathways, do not contribute to RPW8.1 and RPW8.2-mediated resistance.	jasmonic acid	144-157	cysteine and histidine-rich domain-containing protein RAR1	Arabidopsis thaliana	19-23
15773856-6	2005	In contrast, NDR1, RAR1 and PBS3 that are required for function of certain NB-LRR R genes, and COI1 and EIN2 that operate, respectively, in the jasmonic acid and ethylene signalling pathways, do not contribute to RPW8.1 and RPW8.2-mediated resistance.	jasmonic acid	144-157	RNI-like superfamily protein	Arabidopsis thaliana	95-99
15773856-6	2005	In contrast, NDR1, RAR1 and PBS3 that are required for function of certain NB-LRR R genes, and COI1 and EIN2 that operate, respectively, in the jasmonic acid and ethylene signalling pathways, do not contribute to RPW8.1 and RPW8.2-mediated resistance.	jasmonic acid	144-157	NRAMP metal ion transporter family protein	Arabidopsis thaliana	104-108
15703055-3	2005	After infection with Pseudomonas syringae or Botrytis cinerea, the expression of genes regulated by both the salicylic acid and jasmonic acid/ethylene pathways is reduced in ups1 compared with wild type.	jasmonic acid	128-141	ureide permease 1	Arabidopsis thaliana	174-178
15784880-10	2005	The coregulation of ERF1 by another plant hormone, jasmonic acid, illustrates how a transcriptional cascade could be utilized in a combinatorial fashion to generate a large diversity of responses using a limited number of input signals.	jasmonic acid	51-64	ethylene responsive element binding factor 1	Arabidopsis thaliana	20-24
15722469-3	2005	Map-based cloning studies demonstrated that this phenotype results from loss of function of an acyl-CoA oxidase (ACX1A) that catalyzes the first step in the peroxisomal beta-oxidation stage of JA biosynthesis.	jasmonic acid	193-195	peroxisomal acyl-CoA oxidase 1A	Solanum lycopersicum	113-118
15722469-8	2005	We conclude that ACX1A is essential for the beta-oxidation stage of JA biosynthesis and that JA or its derivatives is required both for antiherbivore resistance and the production of the systemic wound signal.	jasmonic acid	68-70	peroxisomal acyl-CoA oxidase 1A	Solanum lycopersicum	17-22
15749761-5	2005	In addition, the expression of HDA19 was induced by wounding, the pathogen Alternaria brassicicola, and the plant hormones jasmonic acid and ethylene.	jasmonic acid	123-136	histone deacetylase 1	Arabidopsis thaliana	31-36
15749761-9	2005	The expression of jasmonic acid and ethylene regulated PATHOGENESIS-RELATED genes, Basic Chitinase and beta-1,3-Glucanase, was upregulated in 35S:HDA19 plants but downregulated in HDA19-RNAi plants.	jasmonic acid	18-31	basic chitinase	Arabidopsis thaliana	83-98
15749761-9	2005	The expression of jasmonic acid and ethylene regulated PATHOGENESIS-RELATED genes, Basic Chitinase and beta-1,3-Glucanase, was upregulated in 35S:HDA19 plants but downregulated in HDA19-RNAi plants.	jasmonic acid	18-31	beta-1,3-glucanase	Arabidopsis thaliana	103-121
15749761-9	2005	The expression of jasmonic acid and ethylene regulated PATHOGENESIS-RELATED genes, Basic Chitinase and beta-1,3-Glucanase, was upregulated in 35S:HDA19 plants but downregulated in HDA19-RNAi plants.	jasmonic acid	18-31	histone deacetylase 1	Arabidopsis thaliana	146-151
15749761-9	2005	The expression of jasmonic acid and ethylene regulated PATHOGENESIS-RELATED genes, Basic Chitinase and beta-1,3-Glucanase, was upregulated in 35S:HDA19 plants but downregulated in HDA19-RNAi plants.	jasmonic acid	18-31	histone deacetylase 1	Arabidopsis thaliana	180-185
15749761-10	2005	Our studies provide evidence that HDA19 may regulate gene expression involved in jasmonic acid and ethylene signaling of pathogen response in Arabidopsis.	jasmonic acid	81-94	histone deacetylase 1	Arabidopsis thaliana	34-39
15634206-12	2005	Expression of the jasmonic acid-dependent pathway marker gene PDF1.2 is compromised in npr4-1 leaves following application of MeJA or a combination of SA and MeJA.	jasmonic acid	18-31	plant defensin 1.2	Arabidopsis thaliana	62-68
15761209-0	2005	Jasmonic acid levels are reduced in COMATOSE ATP-binding cassette transporter mutants.	jasmonic acid	0-13	ATP binding cassette subfamily A member 4	Homo sapiens	45-77
15569707-3	2005	To elucidate the regulation of lysine catabolism in Arabidopsis through these two gene products of the AtLKR/SDH gene, an analysis was carried out on the effects of the hormones, abscisic acid and jasmonate, as well as various metabolic and stress signals, including lysine itself, on their mRNA and protein levels.	jasmonic acid	197-206	lysine-ketoglutarate reductase/saccharopine dehydrogenase bifunctional enzyme	Arabidopsis thaliana	103-108
15569707-3	2005	To elucidate the regulation of lysine catabolism in Arabidopsis through these two gene products of the AtLKR/SDH gene, an analysis was carried out on the effects of the hormones, abscisic acid and jasmonate, as well as various metabolic and stress signals, including lysine itself, on their mRNA and protein levels.	jasmonic acid	197-206	lysine-ketoglutarate reductase/saccharopine dehydrogenase bifunctional enzyme	Arabidopsis thaliana	109-112
15634206-12	2005	Expression of the jasmonic acid-dependent pathway marker gene PDF1.2 is compromised in npr4-1 leaves following application of MeJA or a combination of SA and MeJA.	jasmonic acid	18-31	NPR1-like protein 4	Arabidopsis thaliana	87-91
15634206-13	2005	These results indicate that NPR4 is required for basal defense against pathogens, and that it may be implicated in the cross-talk between the SA- and JA-dependent signaling pathways.	jasmonic acid	150-152	NPR1-like protein 4	Arabidopsis thaliana	28-32
15584961-5	2004	pmr5-mediated resistance did not require signaling through either the salicylic acid or jasmonic acid/ethylene defense pathways, suggesting resistance in this mutant may be due either to the loss of a susceptibility factor or to the activation of a novel form of defense.	jasmonic acid	88-101	Pmr5/Cas1p GDSL/SGNH-like acyl-esterase family protein (DUF828)	Arabidopsis thaliana	0-4
15724969-5	2004	Exogenous foliar application of JA triggered expression of a JA-inducible proteinase inhibitor in tomato cultivars with and without Mi-1.2, although the effects of treatment on aphid performance differed between these cultivars.	jasmonic acid	32-34	root-knot nematode resistance protein	Solanum lycopersicum	132-138
15724969-6	2004	JA-treatment reduced aphid population growth on a susceptible tomato cultivar that lacks Mi-1.2, but did not significantly enhance or inhibit aphid control on a near-isogenic resistant tomato cultivar that carries this gene.	jasmonic acid	0-2	root-knot nematode resistance protein	Solanum lycopersicum	89-95
15322128-9	2004	In leaves, LeARG2 expression and arginase activity were induced in response to wounding and treatment with jasmonic acid (JA), a potent signal for plant defense responses.	jasmonic acid	107-120	arginase 2	Solanum lycopersicum	11-17
15821994-7	2004	Expression of NtAAA1 was induced by jasmonic acid and ethylene, but not by salicylic acid (SA).	jasmonic acid	36-49	AAA-ATPase ASD, mitochondrial-like	Nicotiana tabacum	14-20
15300440-0	2004	The ethylene-, jasmonate-, abscisic acid- and NaCl-responsive tomato transcription factor JERF1 modulates expression of GCC box-containing genes and salt tolerance in tobacco.	jasmonic acid	15-24	transcription factor JERF1	Solanum lycopersicum	90-95
15356262-3	2004	Here, we show that a recombinant tobacco LTP1 is able to load fatty acids and jasmonic acid.	jasmonic acid	78-91	non-specific lipid-transfer protein 1	Nicotiana tabacum	41-45
15356262-7	2004	In contrast, the LTP1-jasmonic acid complex shows a strongly increased interaction with the plasma membrane receptors.	jasmonic acid	22-35	non-specific lipid-transfer protein 1	Nicotiana tabacum	17-21
15356262-8	2004	Treatment of tobacco plants with LTP1-jasmonic acid resulted in an enhancement of resistance toward Phytophthora parasitica.	jasmonic acid	38-51	non-specific lipid-transfer protein 1	Nicotiana tabacum	33-37
15322128-9	2004	In leaves, LeARG2 expression and arginase activity were induced in response to wounding and treatment with jasmonic acid (JA), a potent signal for plant defense responses.	jasmonic acid	122-124	arginase 2	Solanum lycopersicum	11-17
15322128-10	2004	Wound- and JA-induced expression of LeARG2 was not observed in the tomato jasmonic acid-insensitive1 mutant, indicating that this response is strictly dependent on an intact JA signal transduction pathway.	jasmonic acid	11-13	arginase 2	Solanum lycopersicum	36-42
15322128-10	2004	Wound- and JA-induced expression of LeARG2 was not observed in the tomato jasmonic acid-insensitive1 mutant, indicating that this response is strictly dependent on an intact JA signal transduction pathway.	jasmonic acid	74-87	arginase 2	Solanum lycopersicum	36-42
15322128-10	2004	Wound- and JA-induced expression of LeARG2 was not observed in the tomato jasmonic acid-insensitive1 mutant, indicating that this response is strictly dependent on an intact JA signal transduction pathway.	jasmonic acid	174-176	arginase 2	Solanum lycopersicum	36-42
15231270-4	2004	Apart from its role in regulating SAR in the nucleus, a novel cytosolic function of NPR1 in cross-communication between SA- and JA-dependent defense signaling pathways has been identified.	jasmonic acid	128-130	regulatory protein (NPR1)	Arabidopsis thaliana	84-88
15337097-1	2004	Recent work has shown that the Arabidopsis NPR1 protein not only plays an essential role in salicylic acid (SA)-mediated systemic acquired resistance and rhizobacterium-triggered induced systemic resistance, but also is involved in crosstalk inhibition of jasmonic acid (JA)-mediated defense responses.	jasmonic acid	256-269	regulatory protein (NPR1)	Arabidopsis thaliana	43-47
15337097-1	2004	Recent work has shown that the Arabidopsis NPR1 protein not only plays an essential role in salicylic acid (SA)-mediated systemic acquired resistance and rhizobacterium-triggered induced systemic resistance, but also is involved in crosstalk inhibition of jasmonic acid (JA)-mediated defense responses.	jasmonic acid	271-273	regulatory protein (NPR1)	Arabidopsis thaliana	43-47
15258265-2	2004	Several amino acid conjugates of JA were tested for their ability to complement the JA-insensitive Arabidopsis thaliana mutant jar1-1.	jasmonic acid	33-35	Auxin-responsive GH3 family protein	Arabidopsis thaliana	127-131
15258265-7	2004	Expression of wild-type JAR1 in transgenic jar1-1 plants restored sensitivity to JA and elevated JA-Ile to the same level as in the wild type.	jasmonic acid	24-26	Auxin-responsive GH3 family protein	Arabidopsis thaliana	43-47
15200642-6	2004	Physiological experiments suggested that the target of JA is upstream of Constitutive Triple Response 1 (CTR1), but downstream of ET biosynthesis.	jasmonic acid	55-57	Protein kinase superfamily protein	Arabidopsis thaliana	73-103
15242170-6	2004	conglutinans, and this response was blocked in ein2-5 and coi1-1 mutants, impaired in the ethylene (ET) and jasmonic acid (JA) signal pathways, respectively, which further indicates that ERF1 is a downstream component of ET and JA defense responses.	jasmonic acid	108-121	ethylene responsive element binding factor 1	Arabidopsis thaliana	187-191
15242170-6	2004	conglutinans, and this response was blocked in ein2-5 and coi1-1 mutants, impaired in the ethylene (ET) and jasmonic acid (JA) signal pathways, respectively, which further indicates that ERF1 is a downstream component of ET and JA defense responses.	jasmonic acid	123-125	ethylene responsive element binding factor 1	Arabidopsis thaliana	187-191
15242170-6	2004	conglutinans, and this response was blocked in ein2-5 and coi1-1 mutants, impaired in the ethylene (ET) and jasmonic acid (JA) signal pathways, respectively, which further indicates that ERF1 is a downstream component of ET and JA defense responses.	jasmonic acid	228-230	ethylene responsive element binding factor 1	Arabidopsis thaliana	187-191
15181205-9	2004	We also show that the At5PTase11 gene is regulated by abscisic acid, jasmonic acid, and auxin, suggesting a role for phosphoinositide action in these signal transduction pathways.	jasmonic acid	69-82	inositol polyphosphate 5-phosphatase 11	Arabidopsis thaliana	22-32
15125769-3	2004	Molecular characterization of leaves of the mutant revealed severely impaired induction of basic chitinase (chiB) and plant defensin (PDF)1.2 following treatment with jasmonic acid and/or ethylene.	jasmonic acid	167-180	basic chitinase	Arabidopsis thaliana	91-106
15125769-3	2004	Molecular characterization of leaves of the mutant revealed severely impaired induction of basic chitinase (chiB) and plant defensin (PDF)1.2 following treatment with jasmonic acid and/or ethylene.	jasmonic acid	167-180	basic chitinase	Arabidopsis thaliana	108-112
15125769-3	2004	Molecular characterization of leaves of the mutant revealed severely impaired induction of basic chitinase (chiB) and plant defensin (PDF)1.2 following treatment with jasmonic acid and/or ethylene.	jasmonic acid	167-180	protodermal factor 1	Arabidopsis thaliana	134-139
15141068-6	2004	Although most of the beta-oxidation genes were activated by wound-related factors such as dehydration and abscisic acid, jasmonic acid (JA) induced only ACX1 and KAT5.	jasmonic acid	121-134	acyl-CoA oxidase 1	Arabidopsis thaliana	153-157
15141068-6	2004	Although most of the beta-oxidation genes were activated by wound-related factors such as dehydration and abscisic acid, jasmonic acid (JA) induced only ACX1 and KAT5.	jasmonic acid	121-134	peroxisomal 3-keto-acyl-CoA thiolase 2	Arabidopsis thaliana	162-166
15141068-6	2004	Although most of the beta-oxidation genes were activated by wound-related factors such as dehydration and abscisic acid, jasmonic acid (JA) induced only ACX1 and KAT5.	jasmonic acid	136-138	acyl-CoA oxidase 1	Arabidopsis thaliana	153-157
15141068-6	2004	Although most of the beta-oxidation genes were activated by wound-related factors such as dehydration and abscisic acid, jasmonic acid (JA) induced only ACX1 and KAT5.	jasmonic acid	136-138	peroxisomal 3-keto-acyl-CoA thiolase 2	Arabidopsis thaliana	162-166
15141068-8	2004	Induced expression of JA-responsive genes by exogenous application of JA was unaffected in those transgenic plants, suggesting that ACX1 and KAT2 play a major role in driving wound-activated responses by participating in the biosynthesis of JA in wounded Arabidopsis plants.	jasmonic acid	22-24	acyl-CoA oxidase 1	Arabidopsis thaliana	132-136
15141068-8	2004	Induced expression of JA-responsive genes by exogenous application of JA was unaffected in those transgenic plants, suggesting that ACX1 and KAT2 play a major role in driving wound-activated responses by participating in the biosynthesis of JA in wounded Arabidopsis plants.	jasmonic acid	22-24	potassium channel KAT1-like protein	Arabidopsis thaliana	141-145
15231407-6	2004	Correspondingly, RNaseLE was expressed upon wounding of 35S::allene oxide cyclase antisense plants known to be JA deficient.	jasmonic acid	111-113	ribonuclease T2	Solanum lycopersicum	17-24
15231407-9	2004	The data indicate a locally acting wound-inducible systemin- and JA-independent signaling pathway for RNaseLE expression.	jasmonic acid	65-67	ribonuclease T2	Solanum lycopersicum	102-109
14688297-7	2004	These findings indicate that the JA/COI1 signaling pathway regulates distinct developmental processes in different plants and suggest a role for JA in the promotion of glandular trichome-based defenses.	jasmonic acid	33-35	coronatine-insensitive 1	Solanum lycopersicum	36-40
14688297-7	2004	These findings indicate that the JA/COI1 signaling pathway regulates distinct developmental processes in different plants and suggest a role for JA in the promotion of glandular trichome-based defenses.	jasmonic acid	145-147	coronatine-insensitive 1	Solanum lycopersicum	36-40
14615603-13	2003	The reversion of JA responsiveness in ssi2 act1 plants is abolished in the ssi2 act1 coi1 triple-mutant background, suggesting that both JA- and act1-generated signals are required for the expression of the JA-inducible PDF1.2 gene.	jasmonic acid	17-19	Plant stearoyl-acyl-carrier-protein desaturase family protein	Arabidopsis thaliana	38-42
14615603-13	2003	The reversion of JA responsiveness in ssi2 act1 plants is abolished in the ssi2 act1 coi1 triple-mutant background, suggesting that both JA- and act1-generated signals are required for the expression of the JA-inducible PDF1.2 gene.	jasmonic acid	17-19	actin 1	Arabidopsis thaliana	43-47
14615603-13	2003	The reversion of JA responsiveness in ssi2 act1 plants is abolished in the ssi2 act1 coi1 triple-mutant background, suggesting that both JA- and act1-generated signals are required for the expression of the JA-inducible PDF1.2 gene.	jasmonic acid	17-19	Plant stearoyl-acyl-carrier-protein desaturase family protein	Arabidopsis thaliana	75-89
14615603-13	2003	The reversion of JA responsiveness in ssi2 act1 plants is abolished in the ssi2 act1 coi1 triple-mutant background, suggesting that both JA- and act1-generated signals are required for the expression of the JA-inducible PDF1.2 gene.	jasmonic acid	17-19	actin 1	Arabidopsis thaliana	80-84
14615603-13	2003	The reversion of JA responsiveness in ssi2 act1 plants is abolished in the ssi2 act1 coi1 triple-mutant background, suggesting that both JA- and act1-generated signals are required for the expression of the JA-inducible PDF1.2 gene.	jasmonic acid	17-19	plant defensin 1.2	Arabidopsis thaliana	220-226
14615603-13	2003	The reversion of JA responsiveness in ssi2 act1 plants is abolished in the ssi2 act1 coi1 triple-mutant background, suggesting that both JA- and act1-generated signals are required for the expression of the JA-inducible PDF1.2 gene.	jasmonic acid	137-139	Plant stearoyl-acyl-carrier-protein desaturase family protein	Arabidopsis thaliana	38-42
14615603-13	2003	The reversion of JA responsiveness in ssi2 act1 plants is abolished in the ssi2 act1 coi1 triple-mutant background, suggesting that both JA- and act1-generated signals are required for the expression of the JA-inducible PDF1.2 gene.	jasmonic acid	137-139	actin 1	Arabidopsis thaliana	43-47
14615603-13	2003	The reversion of JA responsiveness in ssi2 act1 plants is abolished in the ssi2 act1 coi1 triple-mutant background, suggesting that both JA- and act1-generated signals are required for the expression of the JA-inducible PDF1.2 gene.	jasmonic acid	137-139	Plant stearoyl-acyl-carrier-protein desaturase family protein	Arabidopsis thaliana	75-89
14615603-13	2003	The reversion of JA responsiveness in ssi2 act1 plants is abolished in the ssi2 act1 coi1 triple-mutant background, suggesting that both JA- and act1-generated signals are required for the expression of the JA-inducible PDF1.2 gene.	jasmonic acid	137-139	actin 1	Arabidopsis thaliana	80-84
14615603-13	2003	The reversion of JA responsiveness in ssi2 act1 plants is abolished in the ssi2 act1 coi1 triple-mutant background, suggesting that both JA- and act1-generated signals are required for the expression of the JA-inducible PDF1.2 gene.	jasmonic acid	137-139	plant defensin 1.2	Arabidopsis thaliana	220-226
14675445-2	2003	We characterize three members of the lipoxygenase (LOX) gene family in the native tobacco plant Nicotiana attenuata and manipulate, by antisense expression, a specific, wound- and herbivory-induced isoform (LOX3) involved in JA biosynthesis.	jasmonic acid	225-227	probable linoleate 9S-lipoxygenase 5	Nicotiana tabacum	37-49
14675445-2	2003	We characterize three members of the lipoxygenase (LOX) gene family in the native tobacco plant Nicotiana attenuata and manipulate, by antisense expression, a specific, wound- and herbivory-induced isoform (LOX3) involved in JA biosynthesis.	jasmonic acid	225-227	probable linoleate 9S-lipoxygenase 5	Nicotiana tabacum	51-54
14601670-1	2003	The Arabidopsis mutants ssi2 and fab2 are defective in stearoyl ACP desaturase, which causes altered salicylic acid (SA)- and jasmonic acid (JA)-mediated defense signaling.	jasmonic acid	126-139	Plant stearoyl-acyl-carrier-protein desaturase family protein	Arabidopsis thaliana	24-28
14601670-1	2003	The Arabidopsis mutants ssi2 and fab2 are defective in stearoyl ACP desaturase, which causes altered salicylic acid (SA)- and jasmonic acid (JA)-mediated defense signaling.	jasmonic acid	126-139	Plant stearoyl-acyl-carrier-protein desaturase family protein	Arabidopsis thaliana	33-37
14601670-1	2003	The Arabidopsis mutants ssi2 and fab2 are defective in stearoyl ACP desaturase, which causes altered salicylic acid (SA)- and jasmonic acid (JA)-mediated defense signaling.	jasmonic acid	141-143	Plant stearoyl-acyl-carrier-protein desaturase family protein	Arabidopsis thaliana	24-28
20569407-1	2003	SUMMARY Jasmonate and ethylene are concomitantly involved in the induction of the Arabidopsis plant defensin gene PDF1.2.	jasmonic acid	8-17	plant defensin 1.2	Arabidopsis thaliana	114-120
14507997-3	2003	In parallel, jasmonic acid-regulated signaling is compromised in the ssi2 mutant.	jasmonic acid	13-26	Plant stearoyl-acyl-carrier-protein desaturase family protein	Arabidopsis thaliana	69-73
14507997-8	2003	In parallel with the loss of ssi2-conferred constitutive SA signaling, the ability of jasmonic acid to activate PDF1.2 expression is reinstated in the sfd1 ssi2 npr1 plant.	jasmonic acid	86-99	protodermal factor 1	Arabidopsis thaliana	112-116
14507997-8	2003	In parallel with the loss of ssi2-conferred constitutive SA signaling, the ability of jasmonic acid to activate PDF1.2 expression is reinstated in the sfd1 ssi2 npr1 plant.	jasmonic acid	86-99	Plant stearoyl-acyl-carrier-protein desaturase family protein	Arabidopsis thaliana	156-160
14507997-8	2003	In parallel with the loss of ssi2-conferred constitutive SA signaling, the ability of jasmonic acid to activate PDF1.2 expression is reinstated in the sfd1 ssi2 npr1 plant.	jasmonic acid	86-99	regulatory protein (NPR1)	Arabidopsis thaliana	161-165
14682619-8	2003	The expression of LOX in the presence of inhibitors of JA biosynthesis was not completely inhibited, but delayed in wound response and the expression period was shortened in MeJA response.	jasmonic acid	55-57	linoleate 9S-lipoxygenase1	Zea mays	18-21
14682619-9	2003	These results suggest that wound-responsive JA burst may trigger the early phase of LOX expression which facilitates biosynthesis of endogenous JA through its 13-LOX activity, and subsequently leads to the activation of the late phase LOX expression in MeJA-treated maize seedlings.	jasmonic acid	44-46	linoleate 9S-lipoxygenase1	Zea mays	84-87
14682619-9	2003	These results suggest that wound-responsive JA burst may trigger the early phase of LOX expression which facilitates biosynthesis of endogenous JA through its 13-LOX activity, and subsequently leads to the activation of the late phase LOX expression in MeJA-treated maize seedlings.	jasmonic acid	44-46	linoleate 9S-lipoxygenase1	Zea mays	162-165
14682619-9	2003	These results suggest that wound-responsive JA burst may trigger the early phase of LOX expression which facilitates biosynthesis of endogenous JA through its 13-LOX activity, and subsequently leads to the activation of the late phase LOX expression in MeJA-treated maize seedlings.	jasmonic acid	44-46	linoleate 9S-lipoxygenase1	Zea mays	162-165
14682619-9	2003	These results suggest that wound-responsive JA burst may trigger the early phase of LOX expression which facilitates biosynthesis of endogenous JA through its 13-LOX activity, and subsequently leads to the activation of the late phase LOX expression in MeJA-treated maize seedlings.	jasmonic acid	144-146	linoleate 9S-lipoxygenase1	Zea mays	84-87
14682619-9	2003	These results suggest that wound-responsive JA burst may trigger the early phase of LOX expression which facilitates biosynthesis of endogenous JA through its 13-LOX activity, and subsequently leads to the activation of the late phase LOX expression in MeJA-treated maize seedlings.	jasmonic acid	144-146	linoleate 9S-lipoxygenase1	Zea mays	162-165
14682619-9	2003	These results suggest that wound-responsive JA burst may trigger the early phase of LOX expression which facilitates biosynthesis of endogenous JA through its 13-LOX activity, and subsequently leads to the activation of the late phase LOX expression in MeJA-treated maize seedlings.	jasmonic acid	144-146	linoleate 9S-lipoxygenase1	Zea mays	162-165
12848424-0	2003	Ethylene and jasmonic acid signaling affect the NPR1-independent expression of defense genes without impacting resistance to Pseudomonas syringae and Peronospora parasitica in the Arabidopsis ssi1 mutant.	jasmonic acid	13-26	regulatory protein (NPR1)	Arabidopsis thaliana	48-52
12848424-8	2003	In the present study, we show that, in addition to SA, ethylene and JA signaling also are required for the ssi1-conferred constitutive expression of PDF1.2 and the NPR1-independent expression of PR-1.	jasmonic acid	68-70	plant defensin 1.2	Arabidopsis thaliana	149-155
12848424-8	2003	In the present study, we show that, in addition to SA, ethylene and JA signaling also are required for the ssi1-conferred constitutive expression of PDF1.2 and the NPR1-independent expression of PR-1.	jasmonic acid	68-70	regulatory protein (NPR1)	Arabidopsis thaliana	164-168
12848424-8	2003	In the present study, we show that, in addition to SA, ethylene and JA signaling also are required for the ssi1-conferred constitutive expression of PDF1.2 and the NPR1-independent expression of PR-1.	jasmonic acid	68-70	pathogenesis-related protein 1	Arabidopsis thaliana	195-199
13677466-8	2003	JA responsiveness of these same genes was also investigated by northern blot analysis of anther RNA isolated from wild-type and opr3 plants, In these experiments, four genes were induced in opr3 anthers within 0.5-1 h of JA treatment while the remaining genes were up-regulated only 1-8 h after JA application.	jasmonic acid	0-2	oxophytodienoate-reductase 3	Arabidopsis thaliana	128-132
13677466-8	2003	JA responsiveness of these same genes was also investigated by northern blot analysis of anther RNA isolated from wild-type and opr3 plants, In these experiments, four genes were induced in opr3 anthers within 0.5-1 h of JA treatment while the remaining genes were up-regulated only 1-8 h after JA application.	jasmonic acid	0-2	oxophytodienoate-reductase 3	Arabidopsis thaliana	190-194
13677466-8	2003	JA responsiveness of these same genes was also investigated by northern blot analysis of anther RNA isolated from wild-type and opr3 plants, In these experiments, four genes were induced in opr3 anthers within 0.5-1 h of JA treatment while the remaining genes were up-regulated only 1-8 h after JA application.	jasmonic acid	221-223	oxophytodienoate-reductase 3	Arabidopsis thaliana	128-132
13677466-8	2003	JA responsiveness of these same genes was also investigated by northern blot analysis of anther RNA isolated from wild-type and opr3 plants, In these experiments, four genes were induced in opr3 anthers within 0.5-1 h of JA treatment while the remaining genes were up-regulated only 1-8 h after JA application.	jasmonic acid	221-223	oxophytodienoate-reductase 3	Arabidopsis thaliana	190-194
13677466-8	2003	JA responsiveness of these same genes was also investigated by northern blot analysis of anther RNA isolated from wild-type and opr3 plants, In these experiments, four genes were induced in opr3 anthers within 0.5-1 h of JA treatment while the remaining genes were up-regulated only 1-8 h after JA application.	jasmonic acid	221-223	oxophytodienoate-reductase 3	Arabidopsis thaliana	128-132
13677466-8	2003	JA responsiveness of these same genes was also investigated by northern blot analysis of anther RNA isolated from wild-type and opr3 plants, In these experiments, four genes were induced in opr3 anthers within 0.5-1 h of JA treatment while the remaining genes were up-regulated only 1-8 h after JA application.	jasmonic acid	221-223	oxophytodienoate-reductase 3	Arabidopsis thaliana	190-194
12694277-7	2003	In the same experiment, we also found that application of jasmonic acid generally increased leaf peroxidase activity and trypsin inhibitor concentration in the mutant lines.	jasmonic acid	58-71	peroxidase	Arabidopsis thaliana	97-107
12626746-6	2003	This suppression is abolished in coi1 plants, indicating that DC3000 required an intact jasmonic acid signaling pathway in the plant to suppress NHO1 expression.	jasmonic acid	88-101	Actin-like ATPase superfamily protein	Arabidopsis thaliana	145-149
12650449-6	2003	Establishment of resistance is accompanied by the expression of salicylic acid (SA)-dependent, but also jasmonate/ethylene (JA/ET)-dependent, marker genes PR1 and PDF1.2, respectively, suggesting that both SA-dependent and JA/ET-dependent defense pathways are activated.	jasmonic acid	124-126	pathogenesis-related protein 1	Arabidopsis thaliana	155-158
12615947-3	2003	Arabidopsis plants unable to accumulate SA produced 25-fold higher levels of JA and showed enhanced expression of the JA-responsive genes LOX2, PDF1.2, and VSP in response to infection by Pseudomonas syringae pv tomato DC3000, indicating that in wild-type plants, pathogen-induced SA accumulation is associated with the suppression of JA signaling.	jasmonic acid	118-120	lipoxygenase 2	Arabidopsis thaliana	138-142
12615947-3	2003	Arabidopsis plants unable to accumulate SA produced 25-fold higher levels of JA and showed enhanced expression of the JA-responsive genes LOX2, PDF1.2, and VSP in response to infection by Pseudomonas syringae pv tomato DC3000, indicating that in wild-type plants, pathogen-induced SA accumulation is associated with the suppression of JA signaling.	jasmonic acid	118-120	plant defensin 1.2	Arabidopsis thaliana	144-150
12615947-4	2003	Analysis of the Arabidopsis mutant npr1, which is impaired in SA signal transduction, revealed that the antagonistic effect of SA on JA signaling requires the regulatory protein NPR1.	jasmonic acid	133-135	regulatory protein (NPR1)	Arabidopsis thaliana	35-39
12615947-4	2003	Analysis of the Arabidopsis mutant npr1, which is impaired in SA signal transduction, revealed that the antagonistic effect of SA on JA signaling requires the regulatory protein NPR1.	jasmonic acid	133-135	regulatory protein (NPR1)	Arabidopsis thaliana	178-182
12615947-5	2003	Nuclear localization of NPR1, which is essential for SA-mediated defense gene expression, is not required for the suppression of JA signaling, indicating that cross-talk between SA and JA is modulated through a novel function of NPR1 in the cytosol.	jasmonic acid	185-187	regulatory protein (NPR1)	Arabidopsis thaliana	24-28
12615947-5	2003	Nuclear localization of NPR1, which is essential for SA-mediated defense gene expression, is not required for the suppression of JA signaling, indicating that cross-talk between SA and JA is modulated through a novel function of NPR1 in the cytosol.	jasmonic acid	185-187	regulatory protein (NPR1)	Arabidopsis thaliana	229-233
12624761-0	2003	Functional identification of AtTPS03 as (E)-beta-ocimene synthase: a monoterpene synthase catalyzing jasmonate- and wound-induced volatile formation in Arabidopsis thaliana.	jasmonic acid	101-110	terpene synthase 03	Arabidopsis thaliana	29-36
12624761-9	2003	Transcripts for AtTPS03 were up-regulated in leaves of Arabidopsis in response to mechanical wounding and treatment with jasmonic acid, concurrent with induced emission of (E)-beta-ocimene.	jasmonic acid	121-134	terpene synthase 03	Arabidopsis thaliana	16-23
12569412-6	2003	The cDNA-encoded protein purified from recombinant Escherichia coli cells as a hexahistidine-tagged fusion protein exhibited OPR activity similar to that of AtOPR1, AtOPR2, and LeOPR1, which catalyze reduction of (-)- cis-12-oxophytodienoic acid (OPDA) preferentially over (+)- cis-OPDA, a natural precursor of JA.	jasmonic acid	311-313	12-oxophytodienoate reductase 1	Arabidopsis thaliana	157-163
12569412-6	2003	The cDNA-encoded protein purified from recombinant Escherichia coli cells as a hexahistidine-tagged fusion protein exhibited OPR activity similar to that of AtOPR1, AtOPR2, and LeOPR1, which catalyze reduction of (-)- cis-12-oxophytodienoic acid (OPDA) preferentially over (+)- cis-OPDA, a natural precursor of JA.	jasmonic acid	311-313	12-oxophytodienoate reductase 1	Solanum lycopersicum	177-183
12581315-1	2003	The allene oxide cyclase (AOC)-catalyzed step in jasmonate (JA) biosynthesis is important in the wound response of tomato.	jasmonic acid	49-58	allene oxide cyclase	Solanum lycopersicum	4-24
12581315-1	2003	The allene oxide cyclase (AOC)-catalyzed step in jasmonate (JA) biosynthesis is important in the wound response of tomato.	jasmonic acid	49-58	allene oxide cyclase	Solanum lycopersicum	26-29
12581315-1	2003	The allene oxide cyclase (AOC)-catalyzed step in jasmonate (JA) biosynthesis is important in the wound response of tomato.	jasmonic acid	60-62	allene oxide cyclase	Solanum lycopersicum	4-24
12581315-1	2003	The allene oxide cyclase (AOC)-catalyzed step in jasmonate (JA) biosynthesis is important in the wound response of tomato.	jasmonic acid	60-62	allene oxide cyclase	Solanum lycopersicum	26-29
12581315-4	2003	The tissue-specific occurrence of AOC protein and generation of JA is kept upon wounding or other stresses, but is compromised in 35S::AOCsense plants, whereas 35S::AOCantisense plants exhibited residual AOC expression, a less than 10% rise in JA, and no detectable expression of wound response genes.	jasmonic acid	64-66	allene oxide cyclase	Solanum lycopersicum	135-138
15627690-1	2004	Allene oxide synthase (AOS) is the first enzyme in the lipoxygenase pathway which leads to the formation of jasmonic acid (JA).	jasmonic acid	108-121	allene oxide synthase 2	Triticum aestivum	23-26
15627690-1	2004	Allene oxide synthase (AOS) is the first enzyme in the lipoxygenase pathway which leads to the formation of jasmonic acid (JA).	jasmonic acid	123-125	allene oxide synthase 2	Triticum aestivum	23-26
15627690-6	2004	The TaAOS mRNA could be strongly induced by exogenous JA, and the highest level JA was observed after a 10 h induction.	jasmonic acid	54-56	allene oxide synthase 2	Triticum aestivum	4-9
15627690-6	2004	The TaAOS mRNA could be strongly induced by exogenous JA, and the highest level JA was observed after a 10 h induction.	jasmonic acid	80-82	allene oxide synthase 2	Triticum aestivum	4-9
15231736-2	2004	Elements required for JA induction of the LAP gene are all present in the -317 to -78 proximal promoter region.	jasmonic acid	22-24	leucine aminopeptidase 1, chloroplastic	Solanum lycopersicum	42-45
15231736-9	2004	Knockout mutants in the AtMYC2 homolog gene of Arabidopsis are insensitive to JA and exhibit a decreased activation of the JA-responsive genes AtVSP and JR1.	jasmonic acid	78-80	Basic helix-loop-helix (bHLH) DNA-binding family protein	Arabidopsis thaliana	24-30
15231736-10	2004	Activation of the PDF1.2 and b-CHI, ethylene/JA-responsive genes, is, however, increased in these mutants.	jasmonic acid	45-47	plant defensin 1.2	Arabidopsis thaliana	18-24
15215516-6	2004	In contrast to the PR-1 and PR-5 genes, expression of the JA-dependent PLANT DEFENSIN 1.2 (PDF1.2) and HEVEIN-LIKE PROTEIN (HEL) genes was elevated in the CMV(Y)-inoculated leaves of the eds5 RCY1 plant, but not in the virus-inoculated leaves of the wild-type RCY1 and coi1 RCY1 plants.	jasmonic acid	58-60	transmembrane protein 37	Homo sapiens	19-23
15075400-2	2004	To better understand the molecular basis of JA action, we screened for suppressors of coi1 and isolated a coi1 suppressor1 (cos1) mutant.	jasmonic acid	44-46	6,7-dimethyl-8-ribityllumazine synthase / DMRL synthase / lumazine synthase / riboflavin synthase	Arabidopsis thaliana	106-122
15075400-2	2004	To better understand the molecular basis of JA action, we screened for suppressors of coi1 and isolated a coi1 suppressor1 (cos1) mutant.	jasmonic acid	44-46	6,7-dimethyl-8-ribityllumazine synthase / DMRL synthase / lumazine synthase / riboflavin synthase	Arabidopsis thaliana	124-128
15075400-3	2004	The cos1 mutation restores the coi1-related phenotypes, including defects in JA sensitivity, senescence, and plant defense responses.	jasmonic acid	77-79	6,7-dimethyl-8-ribityllumazine synthase / DMRL synthase / lumazine synthase / riboflavin synthase	Arabidopsis thaliana	4-8
15075400-3	2004	The cos1 mutation restores the coi1-related phenotypes, including defects in JA sensitivity, senescence, and plant defense responses.	jasmonic acid	77-79	RNI-like superfamily protein	Arabidopsis thaliana	31-35
15075400-5	2004	We demonstrated a novel function for the riboflavin pathway that acts downstream of COI1 in the JA signaling pathway and is required for suppression of the COI1-mediated root growth, senescence, and plant defense.	jasmonic acid	96-98	RNI-like superfamily protein	Arabidopsis thaliana	84-88
15075400-5	2004	We demonstrated a novel function for the riboflavin pathway that acts downstream of COI1 in the JA signaling pathway and is required for suppression of the COI1-mediated root growth, senescence, and plant defense.	jasmonic acid	96-98	RNI-like superfamily protein	Arabidopsis thaliana	156-160
15604674-3	2004	JERF3, which functions as an in vivo transcription activator in yeast, binds to the GCC box, an element responsive to ethylene/JA signaling, as well as to DRE, a dehydration-responsive element that responds to dehydration, high salt and low-temperature.	jasmonic acid	127-129	GCC box binding protein C.4	Solanum lycopersicum	0-5
15604674-4	2004	Expression of JERF3 in tomato is mainly induced by ethylene, JA, cold, salt or ABA.	jasmonic acid	61-63	GCC box binding protein C.4	Solanum lycopersicum	14-19
15044700-4	2004	Here we show that a mutation in G3P dehydrogenase restores both salicylic acid- and jasmonic acid-mediated phenotypes of ssi2 plants.	jasmonic acid	84-97	Plant stearoyl-acyl-carrier-protein desaturase family protein	Arabidopsis thaliana	121-125
14716563-6	2004	When plants were treated with NO, Northern analyses revealed that NO strongly induces key enzymes of jasmonic acid (JA) biosynthesis such as allene oxide synthase (AOS) and lipoxygenase (LOX2).	jasmonic acid	101-114	lipoxygenase 1	Arabidopsis thaliana	148-185
14716563-6	2004	When plants were treated with NO, Northern analyses revealed that NO strongly induces key enzymes of jasmonic acid (JA) biosynthesis such as allene oxide synthase (AOS) and lipoxygenase (LOX2).	jasmonic acid	101-114	lipoxygenase 2	Arabidopsis thaliana	187-191
14716563-6	2004	When plants were treated with NO, Northern analyses revealed that NO strongly induces key enzymes of jasmonic acid (JA) biosynthesis such as allene oxide synthase (AOS) and lipoxygenase (LOX2).	jasmonic acid	116-118	lipoxygenase 1	Arabidopsis thaliana	148-185
14716563-6	2004	When plants were treated with NO, Northern analyses revealed that NO strongly induces key enzymes of jasmonic acid (JA) biosynthesis such as allene oxide synthase (AOS) and lipoxygenase (LOX2).	jasmonic acid	116-118	lipoxygenase 2	Arabidopsis thaliana	187-191
14666423-7	2004	Studies using Arabidopsis mutants defective in salicylic acid (SA), ethylene and jasmonic acid signalling revealed that the senescence-associated expression of NHL10 is mediated by a pathway that involves SA but that NHL10 expression during CMV-induced HR and spermine treatment is totally independent of SA.	jasmonic acid	81-94	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family	Arabidopsis thaliana	160-165
14615603-0	2003	Plastidial fatty acid signaling modulates salicylic acid- and jasmonic acid-mediated defense pathways in the Arabidopsis ssi2 mutant.	jasmonic acid	62-75	Plant stearoyl-acyl-carrier-protein desaturase family protein	Arabidopsis thaliana	121-125
14615603-2	2003	By contrast, ssi2 plants are compromised in the induction of the jasmonic acid (JA)-responsive gene PDF1.2 and in resistance to the necrotrophic pathogen Botrytis cinerea.	jasmonic acid	65-78	Plant stearoyl-acyl-carrier-protein desaturase family protein	Arabidopsis thaliana	13-17
14615603-2	2003	By contrast, ssi2 plants are compromised in the induction of the jasmonic acid (JA)-responsive gene PDF1.2 and in resistance to the necrotrophic pathogen Botrytis cinerea.	jasmonic acid	65-78	protodermal factor 1	Arabidopsis thaliana	100-104
14615603-2	2003	By contrast, ssi2 plants are compromised in the induction of the jasmonic acid (JA)-responsive gene PDF1.2 and in resistance to the necrotrophic pathogen Botrytis cinerea.	jasmonic acid	80-82	Plant stearoyl-acyl-carrier-protein desaturase family protein	Arabidopsis thaliana	13-17
14615603-2	2003	By contrast, ssi2 plants are compromised in the induction of the jasmonic acid (JA)-responsive gene PDF1.2 and in resistance to the necrotrophic pathogen Botrytis cinerea.	jasmonic acid	80-82	protodermal factor 1	Arabidopsis thaliana	100-104
14615603-7	2003	A loss-of-function mutation in the soluble chloroplastic enzyme glycerol-3-phosphate acyltransferase (ACT1) completely reverses SA- and JA-mediated phenotypes in ssi2.	jasmonic acid	136-138	phospholipid/glycerol acyltransferase family protein	Arabidopsis thaliana	64-100
14615603-7	2003	A loss-of-function mutation in the soluble chloroplastic enzyme glycerol-3-phosphate acyltransferase (ACT1) completely reverses SA- and JA-mediated phenotypes in ssi2.	jasmonic acid	136-138	actin 1	Arabidopsis thaliana	102-106
14615603-7	2003	A loss-of-function mutation in the soluble chloroplastic enzyme glycerol-3-phosphate acyltransferase (ACT1) completely reverses SA- and JA-mediated phenotypes in ssi2.	jasmonic acid	136-138	Plant stearoyl-acyl-carrier-protein desaturase family protein	Arabidopsis thaliana	162-166
14701925-5	2003	This mutant was less sensitive to jasmonate than the wild type, estimated by the MeJA-induced inhibition of root elongation and ozone-induced expression of AtVSP1, a jasmonate-inducible gene.	jasmonic acid	34-43	vegetative storage protein 1	Arabidopsis thaliana	156-162
14601670-1	2003	The Arabidopsis mutants ssi2 and fab2 are defective in stearoyl ACP desaturase, which causes altered salicylic acid (SA)- and jasmonic acid (JA)-mediated defense signaling.	jasmonic acid	141-143	Plant stearoyl-acyl-carrier-protein desaturase family protein	Arabidopsis thaliana	33-37
14601670-3	2003	In contrast to constitutive activation of the SA pathway, ssi2 and fab2 plants are repressed in JA-mediated induction of the PDF1.2 gene, which suggests that the SSI2-mediated signaling pathway modulates cross talk between the SA and JA pathways.	jasmonic acid	96-98	Plant stearoyl-acyl-carrier-protein desaturase family protein	Arabidopsis thaliana	58-62
14601670-3	2003	In contrast to constitutive activation of the SA pathway, ssi2 and fab2 plants are repressed in JA-mediated induction of the PDF1.2 gene, which suggests that the SSI2-mediated signaling pathway modulates cross talk between the SA and JA pathways.	jasmonic acid	96-98	Plant stearoyl-acyl-carrier-protein desaturase family protein	Arabidopsis thaliana	67-71
14601670-3	2003	In contrast to constitutive activation of the SA pathway, ssi2 and fab2 plants are repressed in JA-mediated induction of the PDF1.2 gene, which suggests that the SSI2-mediated signaling pathway modulates cross talk between the SA and JA pathways.	jasmonic acid	96-98	plant defensin 1.2	Arabidopsis thaliana	125-131
14601670-3	2003	In contrast to constitutive activation of the SA pathway, ssi2 and fab2 plants are repressed in JA-mediated induction of the PDF1.2 gene, which suggests that the SSI2-mediated signaling pathway modulates cross talk between the SA and JA pathways.	jasmonic acid	96-98	Plant stearoyl-acyl-carrier-protein desaturase family protein	Arabidopsis thaliana	162-166
14601670-3	2003	In contrast to constitutive activation of the SA pathway, ssi2 and fab2 plants are repressed in JA-mediated induction of the PDF1.2 gene, which suggests that the SSI2-mediated signaling pathway modulates cross talk between the SA and JA pathways.	jasmonic acid	234-236	Plant stearoyl-acyl-carrier-protein desaturase family protein	Arabidopsis thaliana	58-62
14601670-3	2003	In contrast to constitutive activation of the SA pathway, ssi2 and fab2 plants are repressed in JA-mediated induction of the PDF1.2 gene, which suggests that the SSI2-mediated signaling pathway modulates cross talk between the SA and JA pathways.	jasmonic acid	234-236	Plant stearoyl-acyl-carrier-protein desaturase family protein	Arabidopsis thaliana	67-71
14601670-3	2003	In contrast to constitutive activation of the SA pathway, ssi2 and fab2 plants are repressed in JA-mediated induction of the PDF1.2 gene, which suggests that the SSI2-mediated signaling pathway modulates cross talk between the SA and JA pathways.	jasmonic acid	234-236	plant defensin 1.2	Arabidopsis thaliana	125-131
14601670-3	2003	In contrast to constitutive activation of the SA pathway, ssi2 and fab2 plants are repressed in JA-mediated induction of the PDF1.2 gene, which suggests that the SSI2-mediated signaling pathway modulates cross talk between the SA and JA pathways.	jasmonic acid	234-236	Plant stearoyl-acyl-carrier-protein desaturase family protein	Arabidopsis thaliana	162-166
14601670-5	2003	Both ssi2 rdc mutants are suppressed in constitutive SA signaling, show basal level expression of PR-1 gene, and induce high levels of PDF1.2 in response to exogenous application of JA.	jasmonic acid	182-184	Plant stearoyl-acyl-carrier-protein desaturase family protein	Arabidopsis thaliana	5-9
14601670-5	2003	Both ssi2 rdc mutants are suppressed in constitutive SA signaling, show basal level expression of PR-1 gene, and induce high levels of PDF1.2 in response to exogenous application of JA.	jasmonic acid	182-184	protodermal factor 1	Arabidopsis thaliana	135-139
14576281-2	2003	To address this issue, we examined the effects of stress-related hormones, abscisic acid (ABA), and jasmonate, as well as various metabolic signals on the production of the mRNA and polypeptide of the bifunctional Lys-ketoglutarate reductase (LKR)/saccharopine dehydrogenase (SDH) enzyme, which contains the first two linked enzymes of Lys catabolism.	jasmonic acid	100-109	lysine-ketoglutarate reductase/saccharopine dehydrogenase bifunctional enzyme	Arabidopsis thaliana	214-241
14576281-3	2003	The level of LKR/SDH was strongly enhanced by ABA, jasmonate, and sugar starvation, whereas excess sugars and nitrogen starvation reduced its level; thus this pathway appears to fulfill multiple functions in stress-related and carbon/nitrogen metabolism.	jasmonic acid	51-60	lysine-ketoglutarate reductase/saccharopine dehydrogenase bifunctional enzyme	Arabidopsis thaliana	13-20
12887587-7	2003	The expression of the ORG1, ORG2 and ORG3 genes was co-regulated under all conditions examined including upregulation by SA and downregulation by jasmonic acid (JA).	jasmonic acid	146-159	OBP3-responsive protein 1	Arabidopsis thaliana	22-26
12887587-7	2003	The expression of the ORG1, ORG2 and ORG3 genes was co-regulated under all conditions examined including upregulation by SA and downregulation by jasmonic acid (JA).	jasmonic acid	146-159	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	Arabidopsis thaliana	28-32
12887587-7	2003	The expression of the ORG1, ORG2 and ORG3 genes was co-regulated under all conditions examined including upregulation by SA and downregulation by jasmonic acid (JA).	jasmonic acid	146-159	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	Arabidopsis thaliana	37-41
12887587-7	2003	The expression of the ORG1, ORG2 and ORG3 genes was co-regulated under all conditions examined including upregulation by SA and downregulation by jasmonic acid (JA).	jasmonic acid	161-163	OBP3-responsive protein 1	Arabidopsis thaliana	22-26
12887587-7	2003	The expression of the ORG1, ORG2 and ORG3 genes was co-regulated under all conditions examined including upregulation by SA and downregulation by jasmonic acid (JA).	jasmonic acid	161-163	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	Arabidopsis thaliana	28-32
12887587-7	2003	The expression of the ORG1, ORG2 and ORG3 genes was co-regulated under all conditions examined including upregulation by SA and downregulation by jasmonic acid (JA).	jasmonic acid	161-163	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	Arabidopsis thaliana	37-41
12837953-1	2003	Genetic analysis of the wound response pathway in tomato indicates that systemin and its precursor protein, prosystemin, are upstream components of a defensive signaling cascade that involves the synthesis and subsequent action of the octadecatrienoic acid (18:3)-derived plant hormone jasmonic acid (JA).	jasmonic acid	286-299	systemin	Solanum lycopersicum	72-80
12837953-1	2003	Genetic analysis of the wound response pathway in tomato indicates that systemin and its precursor protein, prosystemin, are upstream components of a defensive signaling cascade that involves the synthesis and subsequent action of the octadecatrienoic acid (18:3)-derived plant hormone jasmonic acid (JA).	jasmonic acid	301-303	systemin	Solanum lycopersicum	72-80
12837953-2	2003	The suppressor of prosystemin-mediated responses2 (spr2) mutation, which was isolated previously as a suppressor of (pro)systemin-mediated signaling, impairs wound-induced JA biosynthesis and the production of a long-distance signal for the expression of defensive Proteinase inhibitor genes.	jasmonic acid	172-174	systemin	Solanum lycopersicum	21-29
12837953-8	2003	These results indicate that jasmonate synthesis from chloroplast pools of 18:3 is required for wound- and systemin-induced defense responses and support a role for systemin in the production of a transmissible signal that is derived from the octadecanoid pathway.	jasmonic acid	28-37	systemin	Solanum lycopersicum	106-114
12837953-8	2003	These results indicate that jasmonate synthesis from chloroplast pools of 18:3 is required for wound- and systemin-induced defense responses and support a role for systemin in the production of a transmissible signal that is derived from the octadecanoid pathway.	jasmonic acid	28-37	systemin	Solanum lycopersicum	164-172
12805591-2	2003	Resistance is compromised by pad3 or coi1 mutations, suggesting that it requires the Arabidopsis phytoalexin camalexin and jasmonic acid (JA)-dependent signaling, respectively.	jasmonic acid	123-136	Cytochrome P450 superfamily protein	Arabidopsis thaliana	29-33
12805591-2	2003	Resistance is compromised by pad3 or coi1 mutations, suggesting that it requires the Arabidopsis phytoalexin camalexin and jasmonic acid (JA)-dependent signaling, respectively.	jasmonic acid	123-136	RNI-like superfamily protein	Arabidopsis thaliana	37-41
12805591-2	2003	Resistance is compromised by pad3 or coi1 mutations, suggesting that it requires the Arabidopsis phytoalexin camalexin and jasmonic acid (JA)-dependent signaling, respectively.	jasmonic acid	138-140	Cytochrome P450 superfamily protein	Arabidopsis thaliana	29-33
12805591-2	2003	Resistance is compromised by pad3 or coi1 mutations, suggesting that it requires the Arabidopsis phytoalexin camalexin and jasmonic acid (JA)-dependent signaling, respectively.	jasmonic acid	138-140	RNI-like superfamily protein	Arabidopsis thaliana	37-41
12654866-2	2003	Transgenic plants expressing a vsp1 promoter-gus (beta-glucuronidase) gene fusion were found to contain high GUS activity when challenged with jasmonate, a volatile plant hormone.	jasmonic acid	143-152	vegetative storage protein 1	Arabidopsis thaliana	31-35
12654866-4	2003	A number of deletions were operated in the vsp1 promoter in order to locate its jasmonate-responsive element.	jasmonic acid	80-89	vegetative storage protein 1	Arabidopsis thaliana	43-47
12694596-6	2003	A third group of mutants comprised of eds8, pad1, ein2, and coi1 affected ethylene and jasmonate signaling.	jasmonic acid	87-96	EDS8	Homo sapiens	38-42
12694596-6	2003	A third group of mutants comprised of eds8, pad1, ein2, and coi1 affected ethylene and jasmonate signaling.	jasmonic acid	87-96	peptidyl arginine deiminase 1	Homo sapiens	44-48
12615947-0	2003	NPR1 modulates cross-talk between salicylate- and jasmonate-dependent defense pathways through a novel function in the cytosol.	jasmonic acid	50-59	regulatory protein (NPR1)	Arabidopsis thaliana	0-4
15200642-6	2004	Physiological experiments suggested that the target of JA is upstream of Constitutive Triple Response 1 (CTR1), but downstream of ET biosynthesis.	jasmonic acid	55-57	Protein kinase superfamily protein	Arabidopsis thaliana	105-109
15208388-2	2004	By means of a genetic screen that exploits the cross talk between ethylene (ET) and JAs, we describe the identification of several new loci involved in JA signaling and the characterization and positional cloning of one of them, JASMONATE-INSENSITIVE1 (JAI1/JIN1).	jasmonic acid	84-87	Basic helix-loop-helix (bHLH) DNA-binding family protein	Arabidopsis thaliana	229-251
15208388-2	2004	By means of a genetic screen that exploits the cross talk between ethylene (ET) and JAs, we describe the identification of several new loci involved in JA signaling and the characterization and positional cloning of one of them, JASMONATE-INSENSITIVE1 (JAI1/JIN1).	jasmonic acid	84-87	Basic helix-loop-helix (bHLH) DNA-binding family protein	Arabidopsis thaliana	258-262
15208388-4	2004	Gain-of-function experiments confirmed the relevance of AtMYC2 in the activation of JA signaling.	jasmonic acid	84-86	Basic helix-loop-helix (bHLH) DNA-binding family protein	Arabidopsis thaliana	56-62
15208388-5	2004	AtMYC2 differentially regulates the expression of two groups of JA-induced genes.	jasmonic acid	64-66	Basic helix-loop-helix (bHLH) DNA-binding family protein	Arabidopsis thaliana	0-6
15208388-8	2004	The second group, integrated by genes involved in JA-mediated systemic responses to wounding, is activated by AtMYC2.	jasmonic acid	50-52	Basic helix-loop-helix (bHLH) DNA-binding family protein	Arabidopsis thaliana	110-116
15208388-10	2004	These results highlight the existence of two branches in the JA signaling pathway, antagonistically regulated by AtMYC2 and ERF1, that are coincident with the alternative responses activated by JA and ET to two different sets of stresses, namely pathogen attack and wounding.	jasmonic acid	61-63	Basic helix-loop-helix (bHLH) DNA-binding family protein	Arabidopsis thaliana	113-119
12509524-4	2003	AtPGIP2 expression is mediated by jasmonate and requires COI1 and JAR1, whereas AtPGIP1 expression is upregulated strongly by oligogalacturonides but is unaffected by salicylic acid, jasmonate, or ethylene.	jasmonic acid	34-43	polygalacturonase inhibiting protein 2	Arabidopsis thaliana	0-7
15208388-10	2004	These results highlight the existence of two branches in the JA signaling pathway, antagonistically regulated by AtMYC2 and ERF1, that are coincident with the alternative responses activated by JA and ET to two different sets of stresses, namely pathogen attack and wounding.	jasmonic acid	61-63	ethylene response factor 1	Arabidopsis thaliana	124-128
12428010-4	2002	An increase in the expression of the arginine decarboxylase 2 (ADC2) gene in response to mechanical wounding and methyl jasmonate (JA) treatment in Arabidopsis was detected by using DNA microarray and RNA gel-blot analysis.	jasmonic acid	131-133	arginine decarboxylase 2	Arabidopsis thaliana	37-61
12430020-1	2002	The jasmonic acid (JA)-dependent regulation of the Thi2.1 gene had previously been exploited for setting up a genetic screen for the isolation of signal transduction mutants of Arabidopsis thaliana (L.) Heynh.	jasmonic acid	4-17	thionin 2.1	Arabidopsis thaliana	51-57
12509529-4	2003	The expression of ERF1 can be activated rapidly by ethylene or jasmonate and can be activated synergistically by both hormones.	jasmonic acid	63-72	eukaryotic translation termination factor 1	Homo sapiens	18-22
12509529-7	2003	Transcriptome analysis in Col;35S:ERF1 transgenic plants and ethylene/jasmonate-treated wild-type plants further supports the notion that ERF1 regulates in vivo the expression of a large number of genes responsive to both ethylene and jasmonate.	jasmonic acid	70-79	eukaryotic translation termination factor 1	Homo sapiens	138-142
12509529-7	2003	Transcriptome analysis in Col;35S:ERF1 transgenic plants and ethylene/jasmonate-treated wild-type plants further supports the notion that ERF1 regulates in vivo the expression of a large number of genes responsive to both ethylene and jasmonate.	jasmonic acid	235-244	eukaryotic translation termination factor 1	Homo sapiens	138-142
12351632-1	2002	Allene oxide synthase (AOS) is a cytochrome P-450 (CYP74A) that catalyzes the first step in the conversion of 13-hydroperoxy linolenic acid to jasmonic acid and related signaling molecules in plants.	jasmonic acid	143-156	cytochrome P450 85A3	Solanum lycopersicum	33-49
12351632-7	2002	In contrast to wild-type plants, LeAOS3 expression was undetectable in roots of a tomato mutant that is defective in jasmonic acid signaling.	jasmonic acid	117-130	allene oxide synthase 3	Solanum lycopersicum	33-39
12430020-1	2002	The jasmonic acid (JA)-dependent regulation of the Thi2.1 gene had previously been exploited for setting up a genetic screen for the isolation of signal transduction mutants of Arabidopsis thaliana (L.) Heynh.	jasmonic acid	19-21	thionin 2.1	Arabidopsis thaliana	51-57
12428010-4	2002	An increase in the expression of the arginine decarboxylase 2 (ADC2) gene in response to mechanical wounding and methyl jasmonate (JA) treatment in Arabidopsis was detected by using DNA microarray and RNA gel-blot analysis.	jasmonic acid	131-133	arginine decarboxylase 2	Arabidopsis thaliana	63-67
12430028-0	2002	Jasmonate is involved in the induction of tyrosine aminotransferase and tocopherol biosynthesis in Arabidopsis thaliana.	jasmonic acid	0-9	tyrosine aminotransferase 3	Arabidopsis thaliana	42-67
12428010-10	2002	The different pattern of expression of ADC2 gene in wild-type and coi1 mutant might be due to the dual regulation of ADC2 by abscisic acid and JA signaling pathways.	jasmonic acid	143-145	arginine decarboxylase 2	Arabidopsis thaliana	39-43
12428010-10	2002	The different pattern of expression of ADC2 gene in wild-type and coi1 mutant might be due to the dual regulation of ADC2 by abscisic acid and JA signaling pathways.	jasmonic acid	143-145	RNI-like superfamily protein	Arabidopsis thaliana	66-70
12428010-10	2002	The different pattern of expression of ADC2 gene in wild-type and coi1 mutant might be due to the dual regulation of ADC2 by abscisic acid and JA signaling pathways.	jasmonic acid	143-145	arginine decarboxylase 2	Arabidopsis thaliana	117-121
12445129-3	2002	Only one of these isoforms (OPR3) participates directly in the octadecanoid pathway for jasmonic acid biosynthesis, as only OPR3 reduces the 9S,13S-stereoisomer of 12-oxophytodienoic acid, the biological precursor of jasmonic acid.	jasmonic acid	217-230	12-oxophytodienoate reductase 3	Solanum lycopersicum	28-32
12430028-9	2002	We conclude that jasmonate plays an important role in the signal transduction pathway regulating TAT activity and the biosynthesis of its product tocopherol.	jasmonic acid	17-26	tyrosine aminotransferase 3	Arabidopsis thaliana	97-100
12430030-0	2002	The Arabidopsis male-sterile mutant dde2-2 is defective in the ALLENE OXIDE SYNTHASE gene encoding one of the key enzymes of the jasmonic acid biosynthesis pathway.	jasmonic acid	129-142	allene oxide synthase	Arabidopsis thaliana	36-42
12430030-0	2002	The Arabidopsis male-sterile mutant dde2-2 is defective in the ALLENE OXIDE SYNTHASE gene encoding one of the key enzymes of the jasmonic acid biosynthesis pathway.	jasmonic acid	129-142	allene oxide synthase	Arabidopsis thaliana	63-84
12445129-3	2002	Only one of these isoforms (OPR3) participates directly in the octadecanoid pathway for jasmonic acid biosynthesis, as only OPR3 reduces the 9S,13S-stereoisomer of 12-oxophytodienoic acid, the biological precursor of jasmonic acid.	jasmonic acid	88-101	12-oxophytodienoate reductase 3	Solanum lycopersicum	28-32
12445129-5	2002	The OPR3 protein and activity were consistently found in peroxisomes where they co-localize with the enzymes of beta-oxidation which catalyze the final steps in the formation of jasmonic acid.	jasmonic acid	178-191	12-oxophytodienoate reductase 3	Solanum lycopersicum	4-8
12430030-4	2002	The dde2-2 phenotype can be rescued by application of methyl jasmonate, indicating that the mutant is affected in jasmonic acid biosynthesis.	jasmonic acid	114-127	allene oxide synthase	Arabidopsis thaliana	4-10
12430030-5	2002	The combination of genetic mapping and a candidate-gene approach identified a frameshift mutation in the ALLENE OXIDE SYNTHASE (AOS) gene, encoding one of the key enzymes of jasmonic acid biosynthesis.	jasmonic acid	174-187	allene oxide synthase	Arabidopsis thaliana	105-126
12213493-7	2002	Jasmonic acid (JA), a 13-LOX-derived oxylipin, accumulates in potato leaves after infiltration with P. syringae pv.	jasmonic acid	0-13	probable linoleate 9S-lipoxygenase 5	Solanum tuberosum	25-28
12430030-5	2002	The combination of genetic mapping and a candidate-gene approach identified a frameshift mutation in the ALLENE OXIDE SYNTHASE (AOS) gene, encoding one of the key enzymes of jasmonic acid biosynthesis.	jasmonic acid	174-187	allene oxide synthase	Arabidopsis thaliana	128-131
12368504-5	2002	We observed that AtRBX1 transgenic plants share multiple phenotypes with CSN reduced-function plants, such as morphological defects and reduced responses to auxin, jasmonic acid, and cold stress, suggesting that CSN is required for multiple AtRBX1-mediated processes.	jasmonic acid	164-177	RING-box 1	Arabidopsis thaliana	17-23
12213493-7	2002	Jasmonic acid (JA), a 13-LOX-derived oxylipin, accumulates in potato leaves after infiltration with P. syringae pv.	jasmonic acid	15-17	probable linoleate 9S-lipoxygenase 5	Solanum tuberosum	25-28
12172031-3	2002	COI1(E22A), a single amino acid substitution in the F-box motif of COI1, abolishes the formation of the SCF(COI1) complexes and results in loss of the JA response.	jasmonic acid	151-153	RNI-like superfamily protein	Arabidopsis thaliana	0-4
12236603-11	2002	In contrast, expression of mRNA for the zinc finger protein was reduced in the mutants affected in the JA- or SA-dependent pathway.	jasmonic acid	103-105	zinc finger protein	Arabidopsis thaliana	40-59
12215508-6	2002	pmr6-mediated resistance requires neither salicylic acid nor the ability to perceive jasmonic acid or ethylene, indicating that the resistance mechanism does not require the activation of well-described defense pathways.	jasmonic acid	85-98	Pectin lyase-like superfamily protein	Arabidopsis thaliana	0-4
12172844-6	2002	Furthermore, the activities of LOX forms metabolizing linolenic acid were detected by measuring the accumulation of volatile aldehydes and the allene oxide synthase-derived metabolite jasmonic acid.	jasmonic acid	184-197	probable linoleate 9S-lipoxygenase 5-like	Cucumis sativus	31-34
12172031-3	2002	COI1(E22A), a single amino acid substitution in the F-box motif of COI1, abolishes the formation of the SCF(COI1) complexes and results in loss of the JA response.	jasmonic acid	151-153	RNI-like superfamily protein	Arabidopsis thaliana	67-71
12172031-3	2002	COI1(E22A), a single amino acid substitution in the F-box motif of COI1, abolishes the formation of the SCF(COI1) complexes and results in loss of the JA response.	jasmonic acid	151-153	RNI-like superfamily protein	Arabidopsis thaliana	67-71
12172031-5	2002	Furthermore, we show that the AtCUL1 component of SCF(COI1) complexes is modified in planta, where mutations in AXR1 decrease the abundance of the modified AtCUL1 of SCF(COI1) and lead to a reduction in JA response.	jasmonic acid	203-205	cullin 1	Arabidopsis thaliana	30-36
12172031-5	2002	Furthermore, we show that the AtCUL1 component of SCF(COI1) complexes is modified in planta, where mutations in AXR1 decrease the abundance of the modified AtCUL1 of SCF(COI1) and lead to a reduction in JA response.	jasmonic acid	203-205	RNI-like superfamily protein	Arabidopsis thaliana	54-58
12172031-5	2002	Furthermore, we show that the AtCUL1 component of SCF(COI1) complexes is modified in planta, where mutations in AXR1 decrease the abundance of the modified AtCUL1 of SCF(COI1) and lead to a reduction in JA response.	jasmonic acid	203-205	NAD(P)-binding Rossmann-fold superfamily protein	Arabidopsis thaliana	112-116
12172031-5	2002	Furthermore, we show that the AtCUL1 component of SCF(COI1) complexes is modified in planta, where mutations in AXR1 decrease the abundance of the modified AtCUL1 of SCF(COI1) and lead to a reduction in JA response.	jasmonic acid	203-205	RNI-like superfamily protein	Arabidopsis thaliana	170-174
12172031-7	2002	These results suggest that the COI1-mediated JA response is dependent on the SCF(COI1) complexes in Arabidopsis and that the AXR1-dependent modification of the AtCUL1 subunit of SCF(COI1) complexes is important for JA signaling.	jasmonic acid	45-47	RNI-like superfamily protein	Arabidopsis thaliana	31-35
12172031-7	2002	These results suggest that the COI1-mediated JA response is dependent on the SCF(COI1) complexes in Arabidopsis and that the AXR1-dependent modification of the AtCUL1 subunit of SCF(COI1) complexes is important for JA signaling.	jasmonic acid	45-47	RNI-like superfamily protein	Arabidopsis thaliana	81-85
12172031-7	2002	These results suggest that the COI1-mediated JA response is dependent on the SCF(COI1) complexes in Arabidopsis and that the AXR1-dependent modification of the AtCUL1 subunit of SCF(COI1) complexes is important for JA signaling.	jasmonic acid	45-47	NAD(P)-binding Rossmann-fold superfamily protein	Arabidopsis thaliana	125-129
12172031-7	2002	These results suggest that the COI1-mediated JA response is dependent on the SCF(COI1) complexes in Arabidopsis and that the AXR1-dependent modification of the AtCUL1 subunit of SCF(COI1) complexes is important for JA signaling.	jasmonic acid	45-47	RNI-like superfamily protein	Arabidopsis thaliana	81-85
12172031-7	2002	These results suggest that the COI1-mediated JA response is dependent on the SCF(COI1) complexes in Arabidopsis and that the AXR1-dependent modification of the AtCUL1 subunit of SCF(COI1) complexes is important for JA signaling.	jasmonic acid	215-217	RNI-like superfamily protein	Arabidopsis thaliana	31-35
12172031-7	2002	These results suggest that the COI1-mediated JA response is dependent on the SCF(COI1) complexes in Arabidopsis and that the AXR1-dependent modification of the AtCUL1 subunit of SCF(COI1) complexes is important for JA signaling.	jasmonic acid	215-217	NAD(P)-binding Rossmann-fold superfamily protein	Arabidopsis thaliana	125-129
12172031-7	2002	These results suggest that the COI1-mediated JA response is dependent on the SCF(COI1) complexes in Arabidopsis and that the AXR1-dependent modification of the AtCUL1 subunit of SCF(COI1) complexes is important for JA signaling.	jasmonic acid	215-217	cullin 1	Arabidopsis thaliana	160-166
12172836-4	2002	We fused firefly luciferase as a reporter to the JA-responsive promoter for the vegetative storage protein gene (VSP) and used this to screen for mutants that failed to express luciferase in the presence of JA, isolating a mutant designated coi1-16.	jasmonic acid	49-51	RNI-like superfamily protein	Arabidopsis thaliana	241-248
12172836-7	2002	We have used coi1-16 seeds to define novel interactions between JA and other hormone signalling pathways in seed germination and in the development of young seedlings.	jasmonic acid	64-66	RNI-like superfamily protein	Arabidopsis thaliana	13-17
12119374-3	2002	Here, we show that cev1 plants have increased production of jasmonate and ethylene and that its phenotype is suppressed by mutations that interrupt jasmonate and ethylene signaling.	jasmonic acid	60-69	Cellulose synthase family protein	Arabidopsis thaliana	19-23
12100478-2	2002	To better understand the biosynthetic mechanisms of this essential plant hormone, we isolated an Arabidopsis knock-out mutant defective in the JA biosynthetic gene CYP74A (allene oxide synthase, AOS) using reverse genetics screening methods.	jasmonic acid	143-145	allene oxide synthase	Arabidopsis thaliana	164-170
12119374-3	2002	Here, we show that cev1 plants have increased production of jasmonate and ethylene and that its phenotype is suppressed by mutations that interrupt jasmonate and ethylene signaling.	jasmonic acid	148-157	Cellulose synthase family protein	Arabidopsis thaliana	19-23
11959903-2	2002	Genetic analysis in tomato indicates that systemin and its precursor protein, prosystemin, are upstream components of a wound-induced, intercellular signaling pathway that involves both the biosynthesis and action of jasmonic acid (JA).	jasmonic acid	217-230	systemin	Solanum lycopersicum	42-50
12059104-2	2002	The recessive mutant designated cir1 exhibited constitutive expression of salicylic acid (SA), jasmonic acid (JA)/ethylene, and reactive oxygen intermediate-dependent genes.	jasmonic acid	95-108	Homeodomain-like superfamily protein	Arabidopsis thaliana	32-36
12059104-2	2002	The recessive mutant designated cir1 exhibited constitutive expression of salicylic acid (SA), jasmonic acid (JA)/ethylene, and reactive oxygen intermediate-dependent genes.	jasmonic acid	110-112	Homeodomain-like superfamily protein	Arabidopsis thaliana	32-36
12059104-11	2002	Thus, JA and ET sensitivity are required for cir1-mediated resistance against P. syringae pv.	jasmonic acid	6-8	Homeodomain-like superfamily protein	Arabidopsis thaliana	45-49
12059104-13	2002	Therefore, the cir1 mutation may define a negative regulator of disease resistance that operates upstream of SA, JA, and ET accumulation.	jasmonic acid	113-115	Homeodomain-like superfamily protein	Arabidopsis thaliana	15-19
11959903-2	2002	Genetic analysis in tomato indicates that systemin and its precursor protein, prosystemin, are upstream components of a wound-induced, intercellular signaling pathway that involves both the biosynthesis and action of jasmonic acid (JA).	jasmonic acid	232-234	systemin	Solanum lycopersicum	42-50
11959903-3	2002	To examine the role of JA in systemic signaling, reciprocal grafting experiments were used to analyze wound-induced expression of the proteinase inhibitor II gene in a JA biosynthetic mutant (spr-2) and a JA response mutant (jai-1).	jasmonic acid	168-170	proteinase inhibitor type-2 CEVI57	Solanum lycopersicum	134-157
11959903-7	2002	Taken together, the results show that activation of the jasmonate biosynthetic pathway in response to wounding or (pro)systemin is required for the production of a long-distance signal whose recognition in distal leaves depends on jasmonate signaling.	jasmonic acid	56-65	systemin	Solanum lycopersicum	119-127
11971137-5	2002	Expression of jasmonic acid- and ethylene-regulated genes, such as PR3, PR4, PDF1.2, and Thi2.1, was affected differently by each of the three tomato ERFs, with Arabidopsis-Pti4 plants having very high levels of PDF1.2 transcripts.	jasmonic acid	14-27	protodermal factor 1	Arabidopsis thaliana	77-81
12028576-5	2002	Expression of the ET/JA-responsive PDF1.2 gene was markedly reduced in hrl1 npr1 and in SA-depleted hrl1 nahG plants.	jasmonic acid	21-23	plant defensin 1.2	Arabidopsis thaliana	35-41
12028576-5	2002	Expression of the ET/JA-responsive PDF1.2 gene was markedly reduced in hrl1 npr1 and in SA-depleted hrl1 nahG plants.	jasmonic acid	21-23	regulatory protein (NPR1)	Arabidopsis thaliana	76-80
12028576-8	2002	Inhibiting JA responses in hrl1 coi1 plants lead to exaggerated cell death and severe stunting of plants.	jasmonic acid	11-13	RNI-like superfamily protein	Arabidopsis thaliana	32-36
11971137-5	2002	Expression of jasmonic acid- and ethylene-regulated genes, such as PR3, PR4, PDF1.2, and Thi2.1, was affected differently by each of the three tomato ERFs, with Arabidopsis-Pti4 plants having very high levels of PDF1.2 transcripts.	jasmonic acid	14-27	DNA-binding protein Pti4	Solanum lycopersicum	173-177
11971137-5	2002	Expression of jasmonic acid- and ethylene-regulated genes, such as PR3, PR4, PDF1.2, and Thi2.1, was affected differently by each of the three tomato ERFs, with Arabidopsis-Pti4 plants having very high levels of PDF1.2 transcripts.	jasmonic acid	14-27	protodermal factor 1	Arabidopsis thaliana	212-216
11874572-1	2002	Jasmonates induce plant-defence responses and act to regulate defence-related genes including positive feedback of the lipoxygenase 2 (LOX2) gene involved in jasmonate synthesis.	jasmonic acid	158-167	lipoxygenase 2	Arabidopsis thaliana	119-133
12026177-0	2002	Pathogen challenge, salicylic acid, and jasmonic acid regulate expression of chitinase gene homologs in pine.	jasmonic acid	40-53	endochitinase B	Nicotiana tabacum	77-86
12026177-8	2002	Jasmonic acid induced class I and class IV but not class II chitinase, whereas salicylic acid induced all three classes of chitinase.	jasmonic acid	0-13	endochitinase B	Nicotiana tabacum	60-69
11874572-1	2002	Jasmonates induce plant-defence responses and act to regulate defence-related genes including positive feedback of the lipoxygenase 2 (LOX2) gene involved in jasmonate synthesis.	jasmonic acid	158-167	lipoxygenase 2	Arabidopsis thaliana	135-139
11874572-3	2002	Spatial and temporal patterns of reporter expression were determined initially, and revealed that JA-responsive expression from the LOX2 promoter required de novo protein synthesis.	jasmonic acid	98-100	lipoxygenase 2	Arabidopsis thaliana	132-136
11903962-6	2002	Plants treated with dihydrozeatin, salicylic acid and jasmonic acid prior to WClMV inoculation showed elevated catalase, glutathione reductase, and peroxidase activity, while SOD activities remained the same as in water-treated controls.	jasmonic acid	54-67	catalase	Homo sapiens	111-119
11846873-6	2002	Additionally, the systemic induction appears to be controlled independently of jasmonic acid, and the local induction of RNS1 and the nuclease activities are independent of both JA and oligosaccharide elicitors.	jasmonic acid	178-180	ribonuclease 1	Arabidopsis thaliana	121-125
11850411-4	2002	The PCD and defense pathways activated in acd11 are salicylic acid (SA) dependent, but do not require intact jasmonic acid or ethylene signaling pathways.	jasmonic acid	109-122	Glycolipid transfer protein (GLTP) family protein	Arabidopsis thaliana	42-47
11903962-6	2002	Plants treated with dihydrozeatin, salicylic acid and jasmonic acid prior to WClMV inoculation showed elevated catalase, glutathione reductase, and peroxidase activity, while SOD activities remained the same as in water-treated controls.	jasmonic acid	54-67	glutathione-disulfide reductase	Homo sapiens	121-142
11903962-6	2002	Plants treated with dihydrozeatin, salicylic acid and jasmonic acid prior to WClMV inoculation showed elevated catalase, glutathione reductase, and peroxidase activity, while SOD activities remained the same as in water-treated controls.	jasmonic acid	54-67	superoxide dismutase 1	Homo sapiens	175-178
11592974-1	2001	The Arabidopsis opr3 mutant is defective in the isoform of 12-oxo-phytodienoate (OPDA) reductase required for jasmonic acid (JA) biosynthesis.	jasmonic acid	110-123	oxophytodienoate-reductase 3	Arabidopsis thaliana	16-20
11725945-0	2001	Identical promoter elements are involved in regulation of the OPR1 gene by senescence and jasmonic acid in Arabidopsis.	jasmonic acid	90-103	12-oxophytodienoate reductase 1	Arabidopsis thaliana	62-66
11592974-1	2001	The Arabidopsis opr3 mutant is defective in the isoform of 12-oxo-phytodienoate (OPDA) reductase required for jasmonic acid (JA) biosynthesis.	jasmonic acid	125-127	oxophytodienoate-reductase 3	Arabidopsis thaliana	16-20
11592974-4	2001	Analysis of transcript profiles in opr3 showed the wound induction of genes previously known to be JA-dependent, suggesting that cyclopentenones could fulfill some JA roles in vivo.	jasmonic acid	99-101	oxophytodienoate-reductase 3	Arabidopsis thaliana	35-39
11595796-2	2001	The defects were rescued by the exogenous application of jasmonic acid (JA) or linolenic acid, which is consistent with the reduced accumulation of JA in the dad1 flower buds.	jasmonic acid	57-70	alpha/beta-Hydrolases superfamily protein	Arabidopsis thaliana	158-162
11595796-2	2001	The defects were rescued by the exogenous application of jasmonic acid (JA) or linolenic acid, which is consistent with the reduced accumulation of JA in the dad1 flower buds.	jasmonic acid	72-74	alpha/beta-Hydrolases superfamily protein	Arabidopsis thaliana	158-162
11595796-2	2001	The defects were rescued by the exogenous application of jasmonic acid (JA) or linolenic acid, which is consistent with the reduced accumulation of JA in the dad1 flower buds.	jasmonic acid	148-150	alpha/beta-Hydrolases superfamily protein	Arabidopsis thaliana	158-162
11595796-5	2001	These results indicate that the DAD1 protein is a chloroplastic phospholipase A1 that catalyzes the initial step of JA biosynthesis.	jasmonic acid	116-118	alpha/beta-Hydrolases superfamily protein	Arabidopsis thaliana	32-36
11481500-6	2001	In contrast, a subset of defense responses regulated by the jasmonic acid (JA) signaling pathway, including expression of the defensin gene PDF1.2 and resistance to Botrytis cinerea, is impaired in ssi2 plants.	jasmonic acid	60-73	Plant stearoyl-acyl-carrier-protein desaturase family protein	Arabidopsis thaliana	198-202
11579688-5	2001	The study of the cell-regulation-system shows that PLD is a part of lipid-based signalling via octadecanoid pathway, which leads to the production of jasmonic acid, the basic signalling molecule in plants.	jasmonic acid	150-163	glycosylphosphatidylinositol specific phospholipase D1	Homo sapiens	51-54
11544109-3	2001	The Arabidopsis MPK4 gene appears to negatively regulate salicylic acid-mediated defense responses and positively regulate jasmonic acid-induced responses.	jasmonic acid	123-136	MAP kinase 4	Arabidopsis thaliana	16-20
11481500-6	2001	In contrast, a subset of defense responses regulated by the jasmonic acid (JA) signaling pathway, including expression of the defensin gene PDF1.2 and resistance to Botrytis cinerea, is impaired in ssi2 plants.	jasmonic acid	75-77	Plant stearoyl-acyl-carrier-protein desaturase family protein	Arabidopsis thaliana	198-202
11402183-10	2001	The observed up-regulation of the PDF1.2 gene in mutants defective in the SA-dependent signaling pathway points to a cross-talk between SA- and jasmonate/ethylene-dependent signaling pathways during pathogen ingress.	jasmonic acid	144-153	plant defensin 1.2	Arabidopsis thaliana	34-40
11439128-3	2001	In addition, cpr5 and cpr6 induce expression of PDF1.2, a defense-related gene associated with activation of the jasmonate/ethylene-mediated resistance pathways.	jasmonic acid	113-122	CPR5 protein	Arabidopsis thaliana	13-17
11402212-4	2001	The response is mediated by jasmonic acid as shown by lack of IGS induction in the jasmonate-insensitive mutant coi1-1.	jasmonic acid	28-41	RNI-like superfamily protein	Arabidopsis thaliana	112-118
11439128-3	2001	In addition, cpr5 and cpr6 induce expression of PDF1.2, a defense-related gene associated with activation of the jasmonate/ethylene-mediated resistance pathways.	jasmonic acid	113-122	plant defensin 1.2	Arabidopsis thaliana	48-54
11439130-2	2001	The Thi 2.1 thionin gene of Arabidopsis thaliana has been shown to be inducible by jasmonic acid (JA), an oxylipin-like hormone derived from oxygenated linolenic acid and synthesized via the octadecanoid pathway.	jasmonic acid	83-96	thionin 2.1	Arabidopsis thaliana	4-11
11439130-2	2001	The Thi 2.1 thionin gene of Arabidopsis thaliana has been shown to be inducible by jasmonic acid (JA), an oxylipin-like hormone derived from oxygenated linolenic acid and synthesized via the octadecanoid pathway.	jasmonic acid	98-100	thionin 2.1	Arabidopsis thaliana	4-11
11439130-3	2001	The JA-dependent regulation of the Thi 2.1 gene has been exploited for setting up a genetic screen for the isolation of signal transduction mutants that constitutively express the Thi 2.1 gene.	jasmonic acid	4-6	thionin 2.1	Arabidopsis thaliana	35-42
11439130-3	2001	The JA-dependent regulation of the Thi 2.1 gene has been exploited for setting up a genetic screen for the isolation of signal transduction mutants that constitutively express the Thi 2.1 gene.	jasmonic acid	4-6	thionin 2.1	Arabidopsis thaliana	180-187
11439131-8	2001	Crosses between either coi1-1 or etr1-1 mutants further demonstrated that constitutive PDF1.2 expression is mediated by a JA- and ethylene-dependent pathway.	jasmonic acid	122-124	RNI-like superfamily protein	Arabidopsis thaliana	23-29
11439131-8	2001	Crosses between either coi1-1 or etr1-1 mutants further demonstrated that constitutive PDF1.2 expression is mediated by a JA- and ethylene-dependent pathway.	jasmonic acid	122-124	plant defensin 1.2	Arabidopsis thaliana	87-93
11311233-0	2001	An Arabidopsis mutant cex1 exhibits constant accumulation of jasmonate-regulated AtVSP, Thi2.1 and PDF1.2.	jasmonic acid	61-70	thionin 2.1	Arabidopsis thaliana	88-94
11340179-5	2001	We conclude that cev1 stimulates both the JA and the ethylene signal pathways and that CEV1 regulates an early step in an Arabidopsis defense pathway.	jasmonic acid	42-44	Cellulose synthase family protein	Arabidopsis thaliana	17-21
11311233-0	2001	An Arabidopsis mutant cex1 exhibits constant accumulation of jasmonate-regulated AtVSP, Thi2.1 and PDF1.2.	jasmonic acid	61-70	plant defensin 1.2	Arabidopsis thaliana	99-105
11239826-1	2001	The common plant phospholipase D (PLD), PLDalpha, has been proposed to be involved in wound-induced production of jasmonic acid.	jasmonic acid	114-127	phospholipase D alpha 1	Arabidopsis thaliana	17-32
11314951-5	2001	The lipoxygenase inhibitor ibuprofen suppressed the accumulation of HDMBOA-Glc induced by CuCl2 treatment, and the reduced accumulation of HDMBOA-Glc was recovered by addition of JA.	jasmonic acid	179-181	linoleate 9S-lipoxygenase4	Zea mays	4-16
11287667-3	2001	Recombinant JMT protein expressed in Escherichia coli catalyzed the formation of methyl jasmonate from jasmonic acid with K(m) value of 38.5 microM.	jasmonic acid	103-116	jasmonic acid carboxyl methyltransferase	Arabidopsis thaliana	12-15
11287667-7	2001	Transgenic Arabidopsis overexpressing JMT had a 3-fold elevated level of endogenous methyl jasmonate without altering jasmonic acid content.	jasmonic acid	118-131	jasmonic acid carboxyl methyltransferase	Arabidopsis thaliana	38-41
11239826-1	2001	The common plant phospholipase D (PLD), PLDalpha, has been proposed to be involved in wound-induced production of jasmonic acid.	jasmonic acid	114-127	phospholipase D alpha 1	Arabidopsis thaliana	34-37
11161037-4	2001	Previous promoter studies demonstrated that VspB promoter sequences between -585 and -535 mediated responses to JA, and sequences between -535 and -401 mediated responses to sugars, phosphate, and auxin.	jasmonic acid	112-114	stem 31 kDa glycoprotein	Glycine max	44-48
11161037-7	2001	Gel-shift and deoxyribonuclease-I footprinting assays revealed four DNA-binding sites between -611 and -451 of the soybean VspB promoter: one in the JA response domain, two in the phosphate response domain, and one binding site in the sugar response domain.	jasmonic acid	149-151	stem 31 kDa glycoprotein	Glycine max	123-127
11161062-6	2001	Two-fold increases occurred in mRNA levels of PDF1.2, which encodes defensin, a peptide involved in the jasmonate (JA)-/ethylene-dependent response pathway.	jasmonic acid	115-117	plant defensin 1.2	Arabidopsis thaliana	46-52
11163186-4	2000	PDF1.2 and THI2.1 gene induction by jasmonate was blocked in mpk4 expressing NahG, suggesting that MPK4 is required for jasmonic acid-responsive gene expression.	jasmonic acid	120-133	protodermal factor 1	Arabidopsis thaliana	0-4
11163186-4	2000	PDF1.2 and THI2.1 gene induction by jasmonate was blocked in mpk4 expressing NahG, suggesting that MPK4 is required for jasmonic acid-responsive gene expression.	jasmonic acid	120-133	thionin 2.1	Arabidopsis thaliana	11-17
11163186-4	2000	PDF1.2 and THI2.1 gene induction by jasmonate was blocked in mpk4 expressing NahG, suggesting that MPK4 is required for jasmonic acid-responsive gene expression.	jasmonic acid	120-133	MAP kinase 4	Arabidopsis thaliana	61-65
11163186-4	2000	PDF1.2 and THI2.1 gene induction by jasmonate was blocked in mpk4 expressing NahG, suggesting that MPK4 is required for jasmonic acid-responsive gene expression.	jasmonic acid	120-133	MAP kinase 4	Arabidopsis thaliana	99-103
11090221-0	2000	Involvement of phospholipase D in wound-induced accumulation of jasmonic acid in arabidopsis.	jasmonic acid	64-77	phospholipase D beta 1	Arabidopsis thaliana	15-30
11090221-2	2000	Antisense abrogation of the common plant PLD, PLDalpha, decreased the wound induction of phosphatidic acid, jasmonic acid (JA), and a JA-regulated gene for vegetative storage protein.	jasmonic acid	108-121	phospholipase D beta 1	Arabidopsis thaliana	41-44
11090221-2	2000	Antisense abrogation of the common plant PLD, PLDalpha, decreased the wound induction of phosphatidic acid, jasmonic acid (JA), and a JA-regulated gene for vegetative storage protein.	jasmonic acid	123-125	phospholipase D beta 1	Arabidopsis thaliana	41-44
11090221-5	2000	These results indicate that activation of PLD mediates wound induction of JA and that LOX2 is probably a downstream target through which PLD promotes the production of JA.	jasmonic acid	74-76	phospholipase D beta 1	Arabidopsis thaliana	42-45
11029709-4	2000	The high levels of AOC mRNA and AOC protein in distinct flower organs correlate with high AOC activity, and with elevated levels of JA, OPDA and JA isoleucine conjugate.	jasmonic acid	132-134	allene oxide cyclase	Solanum lycopersicum	19-22
11029709-4	2000	The high levels of AOC mRNA and AOC protein in distinct flower organs correlate with high AOC activity, and with elevated levels of JA, OPDA and JA isoleucine conjugate.	jasmonic acid	132-134	allene oxide cyclase	Solanum lycopersicum	32-35
11029709-4	2000	The high levels of AOC mRNA and AOC protein in distinct flower organs correlate with high AOC activity, and with elevated levels of JA, OPDA and JA isoleucine conjugate.	jasmonic acid	132-134	allene oxide cyclase	Solanum lycopersicum	32-35
10972869-4	2000	This rapid PLA2 activation occurred before the accumulation of 12-oxophytodienoic and jasmonic acids, two fatty acid-derived defence signals.	jasmonic acid	86-100	phospholipase A2 group IB	Homo sapiens	11-15
10973494-0	2000	The Arabidopsis male-sterile mutant, opr3, lacks the 12-oxophytodienoic acid reductase required for jasmonate synthesis.	jasmonic acid	100-109	oxophytodienoate-reductase 3	Arabidopsis thaliana	37-41
10973494-3	2000	The opr3 mutant plants are sterile but can be rendered fertile by exogenous JA but not by OPDA.	jasmonic acid	76-78	oxophytodienoate-reductase 3	Arabidopsis thaliana	4-8
10973494-7	2000	Just as importantly, our data demonstrate that OPR3 is the only isoform of OPR capable of reducing the correct stereoisomer of OPDA to produce JA required for male gametophyte development.	jasmonic acid	143-145	oxophytodienoate-reductase 3	Arabidopsis thaliana	47-51
11117256-10	2000	In plants, the SCF has so far been implicated in floral development, circadian clock, and response to the plant growth regulators auxin and jasmonic acid.	jasmonic acid	140-153	KIT ligand	Homo sapiens	15-18
11006337-7	2000	Analyses of the responses to O(3) of the JA-signaling mutants jar1 and fad3/7/8 also demonstrated an antagonistic relationship between JA- and SA-signaling pathways in controlling the magnitude of O(3)-induced HR-like cell death.	jasmonic acid	41-43	fatty acid desaturase 3	Arabidopsis thaliana	71-79
11006337-7	2000	Analyses of the responses to O(3) of the JA-signaling mutants jar1 and fad3/7/8 also demonstrated an antagonistic relationship between JA- and SA-signaling pathways in controlling the magnitude of O(3)-induced HR-like cell death.	jasmonic acid	135-137	fatty acid desaturase 3	Arabidopsis thaliana	71-79
10725560-6	2000	However, the expression level of SGN1 was hardly induced with jasmonate, ethephon and salicylate.	jasmonic acid	62-71	glucan endo-1,3-beta-glucosidase	Glycine max	33-37
10889255-1	2000	Several lines of evidence indicate that phospholipase A(2) (PLA(2)) plays a crucial role in plant cellular responses through production of linolenic acid, the precursor of jasmonic acid, from membrane phospholipids.	jasmonic acid	172-185	phospholipase A2 group IIA	Homo sapiens	60-66
10889255-9	2000	This membrane-associated and Ca(2+)-independent PLA(2) is suggested to play an important role in the release of linolenic acid, the precursor of jasmonic acid, through a signal transduction pathway.	jasmonic acid	145-158	phospholipase A2 group IIA	Homo sapiens	48-54
10859201-6	2000	These results suggest a role for LeAOS and LeHPL in the metabolism of 13-HPOT to jasmonic acid and hexenal/traumatin, respectively.	jasmonic acid	81-94	fatty acid hydroperoxide lyase, chloroplastic	Solanum lycopersicum	43-48
10872231-0	2000	12-Oxophytodienoate reductase 3 (OPR3) is the isoenzyme involved in jasmonate biosynthesis.	jasmonic acid	68-77	oxophytodienoate-reductase 3	Arabidopsis thaliana	0-31
10872231-0	2000	12-Oxophytodienoate reductase 3 (OPR3) is the isoenzyme involved in jasmonate biosynthesis.	jasmonic acid	68-77	oxophytodienoate-reductase 3	Arabidopsis thaliana	33-37
10872231-6	2000	Thus, OPR3 is the isoenzyme relevant for jasmonate biosynthesis.	jasmonic acid	41-50	oxophytodienoate-reductase 3	Arabidopsis thaliana	6-10
10700382-4	2000	Using the AtTPS03 fragment as a hybridization probe, a second AtTPS cDNA, designated AtTPS10, was isolated from a jasmonate-induced cDNA library.	jasmonic acid	114-123	terpene synthase 10	Arabidopsis thaliana	85-92
10805441-8	2000	Increased LOX activity was shown in young leaves of transformed plants by an increase in the amounts of endogenous (2E)-hexenal and jasmonic acid.	jasmonic acid	132-145	probable linoleate 9S-lipoxygenase 5-like	Cucumis sativus	10-13
10675557-6	2000	This observation suggests that ESP is likely to be involved in jasmonate-mediated defence and disease resistance mechanisms.	jasmonic acid	63-72	epithiospecifier protein-like	Brassica napus	31-34
9844023-2	1998	The pathogen-inducible genes PR-1, PR-2, and PR-5 require SA signaling for activation, whereas the plant defensin gene PDF1.2, along with a PR-3 and PR-4 gene, are induced by pathogens via an SA-independent and JA-dependent pathway.	jasmonic acid	211-213	plant defensin 1.2	Arabidopsis thaliana	119-125
10069845-2	1999	Napin and oleosin transcripts were detected sooner following treatment with ABA than JA. Treatment of MDEs with ABA plus JA gave an additive accumulation of both napin and oleosin mRNA, the absolute amount being dependent on the concentration of each hormone.	jasmonic acid	78-80	napin	Brassica napus	1-6
10069845-2	1999	Napin and oleosin transcripts were detected sooner following treatment with ABA than JA. Treatment of MDEs with ABA plus JA gave an additive accumulation of both napin and oleosin mRNA, the absolute amount being dependent on the concentration of each hormone.	jasmonic acid	78-80	LOW QUALITY PROTEIN: oleosin-B1	Brassica napus	11-18
10069845-2	1999	Napin and oleosin transcripts were detected sooner following treatment with ABA than JA. Treatment of MDEs with ABA plus JA gave an additive accumulation of both napin and oleosin mRNA, the absolute amount being dependent on the concentration of each hormone.	jasmonic acid	78-80	napin	Brassica napus	163-168
10069845-2	1999	Napin and oleosin transcripts were detected sooner following treatment with ABA than JA. Treatment of MDEs with ABA plus JA gave an additive accumulation of both napin and oleosin mRNA, the absolute amount being dependent on the concentration of each hormone.	jasmonic acid	78-80	LOW QUALITY PROTEIN: oleosin-B1	Brassica napus	173-180
10069845-6	1999	Based on these results with the MDE system, it is possible that embryos of B. napus use endogenous JA to modulate ABA effects on expression of both napin and oleosin. In addition, JA could play a causal role in the reduction of ABA that occurs during late stages of seed development.	jasmonic acid	100-102	napin	Brassica napus	149-154
10069845-6	1999	Based on these results with the MDE system, it is possible that embryos of B. napus use endogenous JA to modulate ABA effects on expression of both napin and oleosin. In addition, JA could play a causal role in the reduction of ABA that occurs during late stages of seed development.	jasmonic acid	100-102	LOW QUALITY PROTEIN: oleosin-B1	Brassica napus	159-166
9927708-2	1999	The first step in JA biosynthesis involves lipoxygenase (LOX) introducing molecular oxygen at the C-13 position of linolenic acid.	jasmonic acid	18-20	probable linoleate 9S-lipoxygenase 5	Solanum tuberosum	43-55
9927708-2	1999	The first step in JA biosynthesis involves lipoxygenase (LOX) introducing molecular oxygen at the C-13 position of linolenic acid.	jasmonic acid	18-20	probable linoleate 9S-lipoxygenase 5	Solanum tuberosum	57-60
9927645-3	1999	Here, we demonstrate that activation of WIPK is required for triggering the jasmonate-mediated signal transduction cascade that occurs when wild-type tobacco plants are wounded.	jasmonic acid	76-85	mitogen-activated protein kinase 3-like	Nicotiana tabacum	40-44
9927645-5	1999	A transgenic tobacco plant in which the wipk gene was constitutively expressed at a high level showed constitutive enzymatic activation of WIPK and exhibited three- to fourfold higher levels of jasmonate than did its wild-type counterpart.	jasmonic acid	194-203	mitogen-activated protein kinase 3-like	Nicotiana tabacum	40-44
9927645-7	1999	These results show that WIPK is activated in response to wounding, which subsequently causes an increase in jasmonate synthesis.	jasmonic acid	108-117	mitogen-activated protein kinase 3-like	Nicotiana tabacum	24-28
9927638-8	1999	Interestingly, expression of PDF1.2, which previously has been shown to be SA independent but jasmonic acid and ethylene dependent, was also suppressed in ssi1 npr1-5 plants by the nahG gene.	jasmonic acid	94-107	plant defensin 1.2	Arabidopsis thaliana	29-35
9927638-8	1999	Interestingly, expression of PDF1.2, which previously has been shown to be SA independent but jasmonic acid and ethylene dependent, was also suppressed in ssi1 npr1-5 plants by the nahG gene.	jasmonic acid	94-107	regulatory protein (NPR1)	Arabidopsis thaliana	160-164
9927645-0	1999	Jasmonate-based wound signal transduction requires activation of WIPK, a tobacco mitogen-activated protein kinase.	jasmonic acid	0-9	mitogen-activated protein kinase 3-like	Nicotiana tabacum	65-69
9880363-10	1999	In contrast, heat-induced Pin2 gene expression and membrane potential changes were not dependent on the ABA level but, rather, on the accumulation of JA.	jasmonic acid	151-153	auxin efflux carrier component 2	Solanum lycopersicum	27-31
9790583-11	1998	The induction pattern of WAPK mRNA upon wounding was not affected by treatment with diethyldithiocarbamic acid, a reagent which inhibits jasmonic acid biosynthesis.	jasmonic acid	137-150	serine/threonine-protein kinase SAPK3-like	Nicotiana tabacum	25-29
9824308-3	1998	Both exogenously applied jasmonates and jasmonates produced endogenously upon stress induction, lead to GUS expression in a Thi2.1 promoter-uidA transgenic line.	jasmonic acid	25-35	thionin 2.1	Arabidopsis thaliana	124-130
9824308-3	1998	Both exogenously applied jasmonates and jasmonates produced endogenously upon stress induction, lead to GUS expression in a Thi2.1 promoter-uidA transgenic line.	jasmonic acid	40-50	thionin 2.1	Arabidopsis thaliana	124-130
9748293-5	1998	An in vitro translated MEF2 family member, MEF2C, was found to bind the JA site with identical properties as endogenously expressed B-MEF2 in B cell lines.	jasmonic acid	72-74	myocyte enhancer factor 2A	Homo sapiens	23-27
9748293-5	1998	An in vitro translated MEF2 family member, MEF2C, was found to bind the JA site with identical properties as endogenously expressed B-MEF2 in B cell lines.	jasmonic acid	72-74	myocyte enhancer factor 2C	Homo sapiens	43-48
9748293-5	1998	An in vitro translated MEF2 family member, MEF2C, was found to bind the JA site with identical properties as endogenously expressed B-MEF2 in B cell lines.	jasmonic acid	72-74	myocyte enhancer factor 2A	Homo sapiens	43-47
9836748-6	1998	We conclude from these experiments that both the ethylene and jasmonate signaling pathways need to be triggered concomitantly, and not sequentially, to activate PDF1.2 upon pathogen infection.	jasmonic acid	62-71	protodermal factor 1	Arabidopsis thaliana	161-165
9836748-8	1998	In contrast to the clear interdependence of the ethylene and jasmonate pathways for pathogen-induced activation of PDF1.2, functional ethylene and jasmonate signaling pathways are not required for growth responses induced by jasmonate and ethylene, respectively.	jasmonic acid	61-70	plant defensin 1.2	Arabidopsis thaliana	115-121
9724702-7	1998	Hence, we postulate that rhizobacteria-mediated ISR follows a novel signaling pathway in which components from the jasmonate and ethylene response are engaged successively to trigger a defense reaction that, like SAR, is regulated by NPR1.	jasmonic acid	115-124	regulatory protein (NPR1)	Arabidopsis thaliana	234-238
9648747-2	1998	The JA-responsive (JR) genes JR1, JR2, and JR3 are strongly induced by wounding and by JA, while the wound-responsive (WR) genes WR3 and acyl CoA oxidase (ACO) are induced by wounding only.	jasmonic acid	4-6	Mannose-binding lectin superfamily protein	Arabidopsis thaliana	29-32
9675902-3	1998	Transcription of the CPD gene is not affected by the plant growth factors auxin, ethylene, gibberellin, cytokinin, jasmonic acid and salicylic acid, but is specifically down-regulated by brassinolide in both dark and light.	jasmonic acid	115-128	Cytochrome P450 superfamily protein	Arabidopsis thaliana	21-24
9778849-3	1998	The methyl esters of OPDA or JA (OPDAME, JAME) and coronatine, are strong inducers of AOS mRNA, polypeptide and enzymatic activity.	jasmonic acid	29-31	allene oxide synthase	Arabidopsis thaliana	86-89
9648747-2	1998	The JA-responsive (JR) genes JR1, JR2, and JR3 are strongly induced by wounding and by JA, while the wound-responsive (WR) genes WR3 and acyl CoA oxidase (ACO) are induced by wounding only.	jasmonic acid	4-6	Tyrosine transaminase family protein	Arabidopsis thaliana	34-37
9648747-2	1998	The JA-responsive (JR) genes JR1, JR2, and JR3 are strongly induced by wounding and by JA, while the wound-responsive (WR) genes WR3 and acyl CoA oxidase (ACO) are induced by wounding only.	jasmonic acid	4-6	peptidase M20/M25/M40 family protein	Arabidopsis thaliana	43-46
9891776-6	1998	The signal transduction pathway that mediates systemin signaling involves linolenic acid release from membranes and subsequent conversion to jasmonic acid, a potent activator of defense gene transcription.	jasmonic acid	141-154	systemin	Solanum lycopersicum	46-54
9526496-1	1998	Tomato and potato leucine aminopeptidase (LAP) mRNAs are induced in response to mechanical wounding and the wound signal molecules, ABA and jasmonic acid.	jasmonic acid	140-153	leucine aminopeptidase, chloroplastic	Solanum tuberosum	18-40
9526496-1	1998	Tomato and potato leucine aminopeptidase (LAP) mRNAs are induced in response to mechanical wounding and the wound signal molecules, ABA and jasmonic acid.	jasmonic acid	140-153	leucine aminopeptidase, chloroplastic	Solanum tuberosum	42-45
9680973-6	1998	JA activation via this pathway was blocked in the A. thaliana JA-insensitive mutants jin1, jin4 and coi1, and by exogenous application of cycloheximide or auxins.	jasmonic acid	0-2	Basic helix-loop-helix (bHLH) DNA-binding family protein	Arabidopsis thaliana	85-89
9680973-6	1998	JA activation via this pathway was blocked in the A. thaliana JA-insensitive mutants jin1, jin4 and coi1, and by exogenous application of cycloheximide or auxins.	jasmonic acid	0-2	RNI-like superfamily protein	Arabidopsis thaliana	100-104
9680973-12	1998	According to the function of an homologous gene, JR3 may be involved in feedback inhibition of the JA response.	jasmonic acid	99-101	peptidase M20/M25/M40 family protein	Arabidopsis thaliana	49-52
9342878-2	1997	The model developed for the wound-induced activation of the proteinase inhibitor II (Pin2) gene in potato (Solanum tuberosum) and tomato (Lycopersicon esculentum) establishes the involvement of the plant hormones abscisic acid and jasmonic acid (JA) as key components of the wound signal transduction pathway.	jasmonic acid	231-244	proteinase inhibitor type-2	Solanum tuberosum	85-89
9342878-2	1997	The model developed for the wound-induced activation of the proteinase inhibitor II (Pin2) gene in potato (Solanum tuberosum) and tomato (Lycopersicon esculentum) establishes the involvement of the plant hormones abscisic acid and jasmonic acid (JA) as key components of the wound signal transduction pathway.	jasmonic acid	246-248	proteinase inhibitor type-2	Solanum tuberosum	85-89
9342878-6	1997	A comparative study of the wound response in wild-type and JA-insensitive coi1 mutant plants indicated that in A. thaliana wound signals are transmitted via at least two different pathways.	jasmonic acid	59-61	RNI-like superfamily protein	Arabidopsis thaliana	74-78
12223716-1	1997	The importance of the two chiral centers at C-3 and C-7 in the molecular structure of jasmonic acid in plant responses was investigated.	jasmonic acid	86-99	probable glutathione S-transferase	Nicotiana tabacum	52-55
24227107-4	1996	In this paper, we show that application of jasmonates (jasmonic acid or its volatile derivative, methyl jasmonate) in low concentrations to foliage of young tomato plants induced, in a dose-dependent manner, the same protein responses-polyphenol oxidase, proteinase inhibitors, lipoxygenase, and peroxidase-as doesHelicoverpa zea Boddie feeding.	jasmonic acid	43-53	peroxidase	Solanum lycopersicum	296-306
9161035-4	1997	When roots of intact plants were treated with JA, high levels of proteinase inhibitor II (pin2), cathepsin D inhibitor, leucine aminopeptidase and threonine deaminase mRNAs accumulated in the systemic leaves.	jasmonic acid	46-48	proteinase inhibitor type-2	Solanum tuberosum	90-94
9161035-4	1997	When roots of intact plants were treated with JA, high levels of proteinase inhibitor II (pin2), cathepsin D inhibitor, leucine aminopeptidase and threonine deaminase mRNAs accumulated in the systemic leaves.	jasmonic acid	46-48	leucine aminopeptidase, chloroplastic	Solanum tuberosum	120-142
9161035-6	1997	In contrast, a novel, root-specific pin2 homologue accumulated in the JA-treated root tissue which could not be detected in leaves, either systemic or those directly treated with JA.	jasmonic acid	70-72	proteinase inhibitor type-2	Solanum tuberosum	36-40
12226423-0	1996	Localized Wounding by Heat Initiates the Accumulation of Proteinase Inhibitor II in Abscisic Acid-Deficient Plants by Triggering Jasmonic Acid Biosynthesis.	jasmonic acid	129-142	proteinase inhibitor type-2 CEVI57	Solanum lycopersicum	57-80
12226423-7	1996	Inhibition of JA biosynthesis by aspirin blocked the heat-induced Pin2 gene expression in tomato wild-type leaves.	jasmonic acid	14-16	auxin efflux carrier component 2	Solanum lycopersicum	66-70
12226423-9	1996	Conversely, burning of the leaves activates Pin2 gene expression by directly triggering the biosynthesis of JA by an alternative pathway that is independent of endogenous ABA levels.	jasmonic acid	108-110	auxin efflux carrier component 2	Solanum lycopersicum	44-48
8944717-6	1996	Increasing concentrations of unlabeled BSA, OA, or transferrin inhibited JA-->B for both BSA and OA without affecting Dex movement.	jasmonic acid	73-75	inhibitor of carbonic anhydrase	Cavia porcellus	51-62
24227107-4	1996	In this paper, we show that application of jasmonates (jasmonic acid or its volatile derivative, methyl jasmonate) in low concentrations to foliage of young tomato plants induced, in a dose-dependent manner, the same protein responses-polyphenol oxidase, proteinase inhibitors, lipoxygenase, and peroxidase-as doesHelicoverpa zea Boddie feeding.	jasmonic acid	55-68	peroxidase	Solanum lycopersicum	296-306
12226307-7	1996	Furthermore, MeJA modulation of the jasmonate-responsive lipoxygenase and phenylalanine ammonia lyase genes was not altered in the mutants.	jasmonic acid	36-45	lipoxygenase 1	Arabidopsis thaliana	57-69
8702864-10	1996	While Lox3 mRNA accumulation peaks as early as 30 min after wounding, Lox2 shows a steady increase over a 24-h time course, suggesting different roles for these lipoxygenase isoforms in the synthesis of the plant hormone jasmonic acid.	jasmonic acid	221-234	probable linoleate 9S-lipoxygenase 5	Solanum tuberosum	161-173
8847233-6	1995	We conclude that in JAS, in addition to the association to B27, there are also weaker but distinct associations to the DRB1*08, DPB1*0301 alleles and homozygosity for LMP2b.	jasmonic acid	20-23	melanocortin 2 receptor accessory protein	Homo sapiens	59-62
8847233-6	1995	We conclude that in JAS, in addition to the association to B27, there are also weaker but distinct associations to the DRB1*08, DPB1*0301 alleles and homozygosity for LMP2b.	jasmonic acid	20-23	major histocompatibility complex, class II, DR beta 1	Homo sapiens	119-123
8847233-6	1995	We conclude that in JAS, in addition to the association to B27, there are also weaker but distinct associations to the DRB1*08, DPB1*0301 alleles and homozygosity for LMP2b.	jasmonic acid	20-23	major histocompatibility complex, class II, DP beta 1	Homo sapiens	128-132
11607535-5	1995	Thus, ABA, JA, and systemin initiate Pin2 mRNA accumulation in the directly treated leaves and in the nontreated leaves (systemic) that are located distal to the treated ones.	jasmonic acid	11-13	auxin efflux carrier component 2	Solanum lycopersicum	37-41
7567995-0	1995	A chloroplast lipoxygenase is required for wound-induced jasmonic acid accumulation in Arabidopsis.	jasmonic acid	57-70	lipoxygenase 1	Arabidopsis thaliana	14-26
7567995-2	1995	The potential involvement of a specific Arabidopsis thaliana lipoxygenase isozyme, LOX2, in the biosynthesis of the plant growth regulators jasmonic acid (JA) and abscisic acid was investigated.	jasmonic acid	140-153	lipoxygenase 1	Arabidopsis thaliana	61-73
7567995-2	1995	The potential involvement of a specific Arabidopsis thaliana lipoxygenase isozyme, LOX2, in the biosynthesis of the plant growth regulators jasmonic acid (JA) and abscisic acid was investigated.	jasmonic acid	140-153	lipoxygenase 2	Arabidopsis thaliana	83-87
7567995-2	1995	The potential involvement of a specific Arabidopsis thaliana lipoxygenase isozyme, LOX2, in the biosynthesis of the plant growth regulators jasmonic acid (JA) and abscisic acid was investigated.	jasmonic acid	155-157	lipoxygenase 1	Arabidopsis thaliana	61-73
7567995-2	1995	The potential involvement of a specific Arabidopsis thaliana lipoxygenase isozyme, LOX2, in the biosynthesis of the plant growth regulators jasmonic acid (JA) and abscisic acid was investigated.	jasmonic acid	155-157	lipoxygenase 2	Arabidopsis thaliana	83-87
7567995-6	1995	However, the wound-induced accumulation of JA observed in control plants was absent in leaves of transgenic plants that lacked LOX2.	jasmonic acid	43-45	lipoxygenase 2	Arabidopsis thaliana	127-131
7567995-10	1995	This result suggests that wound-induced JA (or some other LOX2-requiring component of the wound response pathway) is involved in the wound-induced regulation of this gene.	jasmonic acid	40-42	lipoxygenase 2	Arabidopsis thaliana	58-62
8018869-11	1994	A response to JA was only observed when the oleosin promoter was truncated to -600 suggesting that the reported effect of JA on oleosin gene expression may be at a post-transcriptional level.	jasmonic acid	14-16	LOW QUALITY PROTEIN: oleosin-B1	Brassica napus	44-51
8018869-11	1994	A response to JA was only observed when the oleosin promoter was truncated to -600 suggesting that the reported effect of JA on oleosin gene expression may be at a post-transcriptional level.	jasmonic acid	14-16	LOW QUALITY PROTEIN: oleosin-B1	Brassica napus	128-135
8018869-11	1994	A response to JA was only observed when the oleosin promoter was truncated to -600 suggesting that the reported effect of JA on oleosin gene expression may be at a post-transcriptional level.	jasmonic acid	122-124	LOW QUALITY PROTEIN: oleosin-B1	Brassica napus	44-51
8018869-11	1994	A response to JA was only observed when the oleosin promoter was truncated to -600 suggesting that the reported effect of JA on oleosin gene expression may be at a post-transcriptional level.	jasmonic acid	122-124	LOW QUALITY PROTEIN: oleosin-B1	Brassica napus	128-135
11607466-7	1994	The results (i) suggest that methyl jasmonate can function as a signal for hmg1 expression and SGA induction following wounding and (ii) indicate that the arachidonate- and jasmonate-response pathways are distinct in relation to HMGR gene expression and isoprenoid product accumulation.	jasmonic acid	36-45	3-hydroxy-3-methylglutaryl-coenzyme A reductase 1	Solanum tuberosum	75-79
11607466-7	1994	The results (i) suggest that methyl jasmonate can function as a signal for hmg1 expression and SGA induction following wounding and (ii) indicate that the arachidonate- and jasmonate-response pathways are distinct in relation to HMGR gene expression and isoprenoid product accumulation.	jasmonic acid	36-45	3-hydroxy-3-methylglutaryl-coenzyme A reductase 3	Solanum tuberosum	229-233
7765119-6	1994	An increase in steady-state protein that was paralleled by an increase in total LAP activity was observed in leaf extracts after supplying jasmonic acid via the petioles.	jasmonic acid	139-152	leucine aminopeptidase, chloroplastic	Solanum tuberosum	80-83
7765119-8	1994	However, in these plants LAP activities were only decreased by about 20% as compared to non-transgenic potato plants, while after feeding with jasmonic acid the activity of transgenic plants was reduced to about 5% of that of non-transgenic plants also induced by jasmonic acid.	jasmonic acid	264-277	leucine aminopeptidase, chloroplastic	Solanum tuberosum	25-28
8443345-0	1993	Jasmonic acid-inducible gene expression of a Kunitz-type proteinase inhibitor in potato tuber disks.	jasmonic acid	0-13	serine protease inhibitor 1	Solanum tuberosum	45-77
12297644-2	1992	We show here that when proposed octadecanoid precursors of jasmonic acid, i.e., linolenic acid, 13(S)-hydroperoxylinolenic acid, and phytodienoic acid, were applied to the surfaces of tomato leaves, these compounds also served as powerful inducers of proteinase inhibitor I and II synthesis, a simulation of a wound response.	jasmonic acid	59-72	proteinase inhibitor I	Solanum lycopersicum	251-280
1344887-8	1992	Induction of pin2 expression in leaves by treatment with the plant growth regulators abscisic acid and jasmonic acid, and the general metabolite sucrose, depends on the presence of the regulatory element involved in expression in tubers and wounded leaves.	jasmonic acid	103-116	proteinase inhibitor type-2	Solanum tuberosum	13-17
33802953-4	2021	In this sense, molecular components of JA-signaling such as MYC2 transcription factor and JASMONATE ZIM-DOMAIN (JAZ) repressors are key players for the JA-associated response.	jasmonic acid	39-41	Basic helix-loop-helix (bHLH) DNA-binding family protein	Arabidopsis thaliana	60-64
1876834-2	1991	The allene oxides are unstable epoxide precursors of more complex products such as jasmonic acid, the plant growth hormone.	jasmonic acid	83-96	growth hormone 1	Homo sapiens	108-122
16668141-6	1991	MeJA was almost as effective in N-deficient plants as in those receiving abundant N. Inhibitors of lipoxygenase, the first enzyme in the jasmonic acid biosynthetic pathway, blocked induction by wounding and petiole girdling but not by MeJA.	jasmonic acid	137-150	linoleate 9S-lipoxygenase-4	Glycine max	99-111
33793934-7	2021	Electrophoretic mobility shift assays and dual-luciferase assays demonstrated that both ERFs15 and 16 are transcriptional activators of LIPOXYGENASE D, ALLENE OXIDE CYCLASE, and 12-OXO-PHYTODIENOIC ACID REDUCTASE 3, key genes in JA biosynthesis.	jasmonic acid	229-231	linoleate 13S-lipoxygenase 3-1, chloroplastic	Solanum lycopersicum	136-150
33767717-8	2021	zmerf061 mutant lines increased the expression of the SA signaling-related gene ZmPR1a and decreased the expression of the jasmonic acid (JA) signaling-related gene ZmLox1 after infection with E. turcicum.	jasmonic acid	123-136	linoleate 13S-lipoxygenase10	Zea mays	165-171
33767717-8	2021	zmerf061 mutant lines increased the expression of the SA signaling-related gene ZmPR1a and decreased the expression of the jasmonic acid (JA) signaling-related gene ZmLox1 after infection with E. turcicum.	jasmonic acid	138-140	linoleate 13S-lipoxygenase10	Zea mays	165-171
2152178-1	1990	The expression of vspA and vspB genes encoding soybean vegetative storage proteins was studied during seedling development and in response to water deficit, tissue wounding, and jasmonic acid treatment.	jasmonic acid	178-191	stem 28 kDa glycoprotein	Glycine max	18-22
2152178-1	1990	The expression of vspA and vspB genes encoding soybean vegetative storage proteins was studied during seedling development and in response to water deficit, tissue wounding, and jasmonic acid treatment.	jasmonic acid	178-191	stem 31 kDa glycoprotein	Glycine max	27-31
33775361-0	2021	Rice MEDIATOR25, OsMED25, is an essential subunit for jasmonate-mediated root development and OsMYC2-mediated leaf senescence.	jasmonic acid	54-63	phytochrome and flowering time regulatory protein (PFT1)	Arabidopsis thaliana	5-15
33775361-2	2021	MEDIATOR25 (MED25) has an important role in jasmonic acid (JA) signaling in Arabidopsis.	jasmonic acid	44-57	phytochrome and flowering time regulatory protein (PFT1)	Arabidopsis thaliana	0-10
33775361-2	2021	MEDIATOR25 (MED25) has an important role in jasmonic acid (JA) signaling in Arabidopsis.	jasmonic acid	44-57	phytochrome and flowering time regulatory protein (PFT1)	Arabidopsis thaliana	12-17
33775361-2	2021	MEDIATOR25 (MED25) has an important role in jasmonic acid (JA) signaling in Arabidopsis.	jasmonic acid	59-61	phytochrome and flowering time regulatory protein (PFT1)	Arabidopsis thaliana	0-10
33775361-2	2021	MEDIATOR25 (MED25) has an important role in jasmonic acid (JA) signaling in Arabidopsis.	jasmonic acid	59-61	phytochrome and flowering time regulatory protein (PFT1)	Arabidopsis thaliana	12-17
33775361-3	2021	However, no research has been conducted on the role of MED25 in JA signaling in rice, which is one of the most important food crops globally and is a model plant for molecular studies in other monocotyledonous species.	jasmonic acid	64-66	phytochrome and flowering time regulatory protein (PFT1)	Arabidopsis thaliana	55-60
33826012-9	2021	Genetically, the complementation of CsMYC2.1 in myc2 mutants conferred the ability to restore the sensitivity to JA signals.	jasmonic acid	113-115	Basic helix-loop-helix (bHLH) DNA-binding family protein	Arabidopsis thaliana	48-52
33032325-5	2021	We found that HbCOI1 restores male sterility and JA responses of the coi1-1 mutant in Arabidopsis.	jasmonic acid	49-51	RNI-like superfamily protein	Arabidopsis thaliana	69-73
34961242-5	2021	However, seed priming with GA, JA and the GA + JA mixture significantly improved summer squash salt tolerance by reducing the concentration of Na+ and Cl-, TBARS, and the Chl a/b ratio and by increasing the activity of superoxide dismutase, CAT, and APX, the quantities of K+ and Mg++, the K+/Na+ ratio, and the quantities of RNA, DNA, chlorophyll b, and Car, which, in turn, ameliorated the growth of salinized plants.	jasmonic acid	31-33	catalase	Homo sapiens	241-244
33034676-6	2021	As a vital PGR, JA contributes in many signal transduction pathways, i.e., gene network, regulatory protein, signaling intermediates and enzymes, proteins, and other molecules that act to defend cells from the harmful effects of various environmental stresses.	jasmonic acid	16-18	progesterone receptor	Homo sapiens	11-14
20508139-9	2010	Furthermore, both the morphology and constitutive pathogen resistance of snc4-1D are partially suppressed by blocking jasmonic acid synthesis, suggesting that jasmonic acid plays an important role in snc4-1D-mediated resistance.	jasmonic acid	118-131	suppressor of npr1-1 constitutive 4	Arabidopsis thaliana	73-77
20508139-9	2010	Furthermore, both the morphology and constitutive pathogen resistance of snc4-1D are partially suppressed by blocking jasmonic acid synthesis, suggesting that jasmonic acid plays an important role in snc4-1D-mediated resistance.	jasmonic acid	118-131	suppressor of npr1-1 constitutive 4	Arabidopsis thaliana	200-204
20508139-9	2010	Furthermore, both the morphology and constitutive pathogen resistance of snc4-1D are partially suppressed by blocking jasmonic acid synthesis, suggesting that jasmonic acid plays an important role in snc4-1D-mediated resistance.	jasmonic acid	159-172	suppressor of npr1-1 constitutive 4	Arabidopsis thaliana	73-77
20508139-9	2010	Furthermore, both the morphology and constitutive pathogen resistance of snc4-1D are partially suppressed by blocking jasmonic acid synthesis, suggesting that jasmonic acid plays an important role in snc4-1D-mediated resistance.	jasmonic acid	159-172	suppressor of npr1-1 constitutive 4	Arabidopsis thaliana	200-204
34929168-0	2022	Protein-protein interactions between jasmonate-related master regulator MYC and transcriptional mediator MED25 depend on a short binding domain.	jasmonic acid	37-46	MYC proto-oncogene, bHLH transcription factor	Homo sapiens	72-75
34929168-0	2022	Protein-protein interactions between jasmonate-related master regulator MYC and transcriptional mediator MED25 depend on a short binding domain.	jasmonic acid	37-46	mediator complex subunit 25	Homo sapiens	105-110
34929168-2	2022	In the absence of JA-Ile, inhibitory protein jasmonate-ZIM-domain (JAZ) represses JA-related transcription factors, including a master regulator, MYC.	jasmonic acid	45-54	MYC proto-oncogene, bHLH transcription factor	Homo sapiens	146-149
34929168-9	2022	In addition, quantitative analyses on the binding of MYC3-JAZs and MYC3-MED25 revealed the order of binding affinity as JAZJas < MED25CMIDM < JAZCMID, suggesting a mechanism for how the transcriptional machinery causes activation and negative feedback regulation during jasmonate signaling.	jasmonic acid	270-279	mediator complex subunit 25	Homo sapiens	72-77
34942029-4	2022	ECAP, JAZ6/8, and TPR2 are known to form a transcriptional repressor complex, negatively regulate jasmonate (JA)-responsive anthocyanin accumulation.	jasmonic acid	98-107	jasmonate-zim-domain protein 6	Arabidopsis thaliana	6-12
34942029-4	2022	ECAP, JAZ6/8, and TPR2 are known to form a transcriptional repressor complex, negatively regulate jasmonate (JA)-responsive anthocyanin accumulation.	jasmonic acid	98-107	Tetratricopeptide repeat (TPR)-like superfamily protein	Arabidopsis thaliana	18-22
34942029-4	2022	ECAP, JAZ6/8, and TPR2 are known to form a transcriptional repressor complex, negatively regulate jasmonate (JA)-responsive anthocyanin accumulation.	jasmonic acid	109-111	jasmonate-zim-domain protein 6	Arabidopsis thaliana	6-12
34942029-4	2022	ECAP, JAZ6/8, and TPR2 are known to form a transcriptional repressor complex, negatively regulate jasmonate (JA)-responsive anthocyanin accumulation.	jasmonic acid	109-111	Tetratricopeptide repeat (TPR)-like superfamily protein	Arabidopsis thaliana	18-22
34530165-5	2022	Expression of the CLE14-encoding gene in leaves was significantly induced by age, high salinity, abscisic acid (ABA), salicylic acid (SA) and jasmonic acid (JA).	jasmonic acid	142-155	CLAVATA3/ESR-RELATED 14	Arabidopsis thaliana	18-23
34530165-5	2022	Expression of the CLE14-encoding gene in leaves was significantly induced by age, high salinity, abscisic acid (ABA), salicylic acid (SA) and jasmonic acid (JA).	jasmonic acid	157-159	CLAVATA3/ESR-RELATED 14	Arabidopsis thaliana	18-23
34954802-4	2022	A variety of inducible genes, including several important genes in the salicylic acid (SA) and jasmonic acid (JA) pathways, were transcriptionally up-regulated in the chr19 mutant under normal growth conditions, indicative of a role of CHR19 in transcriptional repression.	jasmonic acid	95-108	SNF2 domain-containing protein / helicase domain-containing protein	Arabidopsis thaliana	167-172
34954802-4	2022	A variety of inducible genes, including several important genes in the salicylic acid (SA) and jasmonic acid (JA) pathways, were transcriptionally up-regulated in the chr19 mutant under normal growth conditions, indicative of a role of CHR19 in transcriptional repression.	jasmonic acid	95-108	SNF2 domain-containing protein / helicase domain-containing protein	Arabidopsis thaliana	236-241
34954802-4	2022	A variety of inducible genes, including several important genes in the salicylic acid (SA) and jasmonic acid (JA) pathways, were transcriptionally up-regulated in the chr19 mutant under normal growth conditions, indicative of a role of CHR19 in transcriptional repression.	jasmonic acid	110-112	SNF2 domain-containing protein / helicase domain-containing protein	Arabidopsis thaliana	167-172
34954802-4	2022	A variety of inducible genes, including several important genes in the salicylic acid (SA) and jasmonic acid (JA) pathways, were transcriptionally up-regulated in the chr19 mutant under normal growth conditions, indicative of a role of CHR19 in transcriptional repression.	jasmonic acid	110-112	SNF2 domain-containing protein / helicase domain-containing protein	Arabidopsis thaliana	236-241
34954802-5	2022	In addition, the chr19 mutation triggered higher susceptibility to the JA pathway-defended necrotrophic fungal pathogen Botrytis cinerea, but did not affect the growth of the SA pathway-defended hemibiotrophic bacterial pathogen Pseudomonas syringae pv.	jasmonic acid	71-73	SNF2 domain-containing protein / helicase domain-containing protein	Arabidopsis thaliana	17-22
34961242-5	2021	However, seed priming with GA, JA and the GA + JA mixture significantly improved summer squash salt tolerance by reducing the concentration of Na+ and Cl-, TBARS, and the Chl a/b ratio and by increasing the activity of superoxide dismutase, CAT, and APX, the quantities of K+ and Mg++, the K+/Na+ ratio, and the quantities of RNA, DNA, chlorophyll b, and Car, which, in turn, ameliorated the growth of salinized plants.	jasmonic acid	47-49	catalase	Homo sapiens	241-244
34736953-3	2021	In this work, we stimulated camalexin biosynthesis in Arabidopsis calli by blocking one of repressors of the jasmonate pathway, the jasmonate ZIM-domain protein 1 (JAZ1) by using amiRNA targeting JAZ1 gene transcripts.	jasmonic acid	109-118	jasmonate-zim-domain protein 1	Arabidopsis thaliana	132-162
34910911-4	2021	The indispensable role of NPR1 in activating SA-responsive genes is well understood, but how it functions as a repressor of JA-responsive genes remains unclear.	jasmonic acid	124-126	natriuretic peptide receptor 1	Homo sapiens	26-30
34910911-5	2021	Here, we demonstrate that SA-induced NPR1 is recruited to JA-responsive promoter regions that are co-occupied by a JA-induced transcription complex consisting of the MYC2 activator and MED25 Mediator subunit.	jasmonic acid	58-60	natriuretic peptide receptor 1	Homo sapiens	37-41
34910911-5	2021	Here, we demonstrate that SA-induced NPR1 is recruited to JA-responsive promoter regions that are co-occupied by a JA-induced transcription complex consisting of the MYC2 activator and MED25 Mediator subunit.	jasmonic acid	58-60	mediator complex subunit 25	Homo sapiens	185-190
34910911-5	2021	Here, we demonstrate that SA-induced NPR1 is recruited to JA-responsive promoter regions that are co-occupied by a JA-induced transcription complex consisting of the MYC2 activator and MED25 Mediator subunit.	jasmonic acid	115-117	natriuretic peptide receptor 1	Homo sapiens	37-41
34910911-5	2021	Here, we demonstrate that SA-induced NPR1 is recruited to JA-responsive promoter regions that are co-occupied by a JA-induced transcription complex consisting of the MYC2 activator and MED25 Mediator subunit.	jasmonic acid	115-117	mediator complex subunit 25	Homo sapiens	185-190
34910911-6	2021	In the presence of SA, NPR1 physically associates with JA-induced MYC2 and inhibits transcriptional activation by disrupting its interaction with MED25.	jasmonic acid	55-57	natriuretic peptide receptor 1	Homo sapiens	23-27
34910911-6	2021	In the presence of SA, NPR1 physically associates with JA-induced MYC2 and inhibits transcriptional activation by disrupting its interaction with MED25.	jasmonic acid	55-57	mediator complex subunit 25	Homo sapiens	146-151
34910911-8	2021	Thus, NPR1 orchestrates the immune transcriptome not only by activating SA-responsive genes but also by acting as a corepressor of JA-responsive MYC2.	jasmonic acid	131-133	natriuretic peptide receptor 1	Homo sapiens	6-10
34736953-3	2021	In this work, we stimulated camalexin biosynthesis in Arabidopsis calli by blocking one of repressors of the jasmonate pathway, the jasmonate ZIM-domain protein 1 (JAZ1) by using amiRNA targeting JAZ1 gene transcripts.	jasmonic acid	109-118	jasmonate-zim-domain protein 1	Arabidopsis thaliana	164-168
34736953-3	2021	In this work, we stimulated camalexin biosynthesis in Arabidopsis calli by blocking one of repressors of the jasmonate pathway, the jasmonate ZIM-domain protein 1 (JAZ1) by using amiRNA targeting JAZ1 gene transcripts.	jasmonic acid	109-118	jasmonate-zim-domain protein 1	Arabidopsis thaliana	196-200
34890461-9	2021	JA and ET induced ORA59 phosphorylation, which was required for both activity and specificity of ORA59.	jasmonic acid	0-2	octadecanoid-responsive AP2/ERF 59	Arabidopsis thaliana	97-102
34884854-6	2021	Importantly, transcriptional regulation prediction showed that six key WRKY genes contribute to four major defense-related pathways: L-phenylalanine biosynthesis II and flavonoid, benzoxazinoid, and jasmonic acid (JA) biosynthesis.	jasmonic acid	199-212	WRKY transcription factor WRKY76	Zea mays	71-75
34890461-0	2021	The transcription factor ORA59 exhibits dual DNA binding specificity that differentially regulates ethylene- and jasmonic acid-induced genes in plant immunity.	jasmonic acid	113-126	octadecanoid-responsive AP2/ERF 59	Arabidopsis thaliana	25-30
34890461-8	2021	Notably, ORA59 exhibited a differential preference for GCC box and ERELEE4, depending on whether ORA59 activation is achieved by JA and ET, respectively.	jasmonic acid	129-131	octadecanoid-responsive AP2/ERF 59	Arabidopsis thaliana	9-14
34890461-8	2021	Notably, ORA59 exhibited a differential preference for GCC box and ERELEE4, depending on whether ORA59 activation is achieved by JA and ET, respectively.	jasmonic acid	129-131	octadecanoid-responsive AP2/ERF 59	Arabidopsis thaliana	97-102
34890461-9	2021	JA and ET induced ORA59 phosphorylation, which was required for both activity and specificity of ORA59.	jasmonic acid	0-2	octadecanoid-responsive AP2/ERF 59	Arabidopsis thaliana	18-23
34884854-6	2021	Importantly, transcriptional regulation prediction showed that six key WRKY genes contribute to four major defense-related pathways: L-phenylalanine biosynthesis II and flavonoid, benzoxazinoid, and jasmonic acid (JA) biosynthesis.	jasmonic acid	214-216	WRKY transcription factor WRKY76	Zea mays	71-75
34899793-7	2021	In pldalpha1-1 plants, higher accumulation of abscisic and jasmonic acid (JA) and impaired magnesium, potassium and phosphate homeostasis were observed under high-Mg2+ conditions.	jasmonic acid	59-72	phospholipase D alpha 1	Arabidopsis thaliana	3-14
34596247-1	2021	Arabidopsis MYC2 is a basic helix-loop-helix transcription factor that works both as a negative and positive regulator of light and multiple hormonal signaling pathways, including jasmonic acid and abscisic acid.	jasmonic acid	180-193	Basic helix-loop-helix (bHLH) DNA-binding family protein	Arabidopsis thaliana	12-16
34562337-2	2021	We recently discovered that a member of the JAZ family, JAZ4 has a prominent function in canonical JA signaling as well as other mechanisms.	jasmonic acid	99-101	jasmonate-zim-domain protein 4	Arabidopsis thaliana	56-60
34562337-3	2021	Here, we discovered the existence of two naturally occurring splice variants (SVs) of JAZ4 in planta, JAZ4.1 and JAZ4.2, and employed biochemical and pharmacological approaches to determine protein stability and repression capability of these SVs within JA signaling.	jasmonic acid	254-256	jasmonate-zim-domain protein 4	Arabidopsis thaliana	86-90
34852025-0	2021	Turnip mosaic virus P1 suppresses JA biosynthesis by degrading cpSRP54 that delivers AOCs onto the thylakoid membrane to facilitate viral infection.	jasmonic acid	34-36	chloroplast signal recognition particle 54 kDa subunit	Arabidopsis thaliana	63-70
34852025-6	2021	Furthermore, cpSRP54 interacted with allene oxide cyclases (AOCs), key JA biosynthesis enzymes, and was responsible for delivering AOCs onto the thylakoid membrane (TM).	jasmonic acid	71-73	chloroplast signal recognition particle 54 kDa subunit	Arabidopsis thaliana	13-20
34852025-8	2021	The results suggest that TuMV has evolved a strategy, through the inhibition of cpSRP54 and its delivery of AOCs to the TM, to suppress JA biosynthesis and enhance viral infection.	jasmonic acid	136-138	chloroplast signal recognition particle 54 kDa subunit	Arabidopsis thaliana	80-87
34899793-7	2021	In pldalpha1-1 plants, higher accumulation of abscisic and jasmonic acid (JA) and impaired magnesium, potassium and phosphate homeostasis were observed under high-Mg2+ conditions.	jasmonic acid	74-76	phospholipase D alpha 1	Arabidopsis thaliana	3-14
34899796-5	2021	Transcriptome analysis revealed that overexpression of TaLTP3 specifically activated the transcription of pathogenesis-related protein 1a (TaPR1a) and multiple plant hormone pathways, including salicylic acid (SA), jasmonic acid (JA), and auxin, in response to the infection of the model bacterial pathogen Pseudomonas syringae pv.	jasmonic acid	215-228	probable non-specific lipid-transfer protein 3	Triticum aestivum	55-61
34899796-5	2021	Transcriptome analysis revealed that overexpression of TaLTP3 specifically activated the transcription of pathogenesis-related protein 1a (TaPR1a) and multiple plant hormone pathways, including salicylic acid (SA), jasmonic acid (JA), and auxin, in response to the infection of the model bacterial pathogen Pseudomonas syringae pv.	jasmonic acid	230-232	probable non-specific lipid-transfer protein 3	Triticum aestivum	55-61
34880892-7	2021	As with the JA-deficient mutant dde2-2, the transgenic line 4-1 was insensitive to 50 muM methyl jasmonate, compared with the wild-type plants.	jasmonic acid	12-14	allene oxide synthase	Arabidopsis thaliana	32-38
34868098-10	2021	Our results proposed a novel mechanism of counter defense signaling pathways used by Agrobacterium, suggesting that VirE3 and JAZ8 may antagonistically modulate the salicylic acid/jasmonic acid (SA/JA)-mediated plant defense signaling response during Agrobacterium infection.	jasmonic acid	180-193	hypothetical protein	Agrobacterium tumefaciens	116-121
34830002-10	2021	Jasmonates might also have key roles in anther dehiscence by affecting the expression of the genes involved in pectin lysis, water transport, and cysteine protease.	jasmonic acid	0-10	cathepsin B	Homo sapiens	146-163
34809577-0	2021	Chromatin enrichment for proteomics in plants (ChEP-P) implicates the histone reader ALFIN-LIKE 6 in jasmonate signalling.	jasmonic acid	101-110	alfin-like 6	Arabidopsis thaliana	85-97
34809577-3	2021	RESULTS: Here, we demonstrate that AL6 is also involved in the response of Arabidopsis seedlings to jasmonic acid (JA) during skotomorphogenesis, possibly by modulating chromatin dynamics that affect the transcriptional regulation of JA-responsive genes.	jasmonic acid	100-113	alfin-like 6	Arabidopsis thaliana	35-38
34809577-3	2021	RESULTS: Here, we demonstrate that AL6 is also involved in the response of Arabidopsis seedlings to jasmonic acid (JA) during skotomorphogenesis, possibly by modulating chromatin dynamics that affect the transcriptional regulation of JA-responsive genes.	jasmonic acid	115-117	alfin-like 6	Arabidopsis thaliana	35-38
34809577-3	2021	RESULTS: Here, we demonstrate that AL6 is also involved in the response of Arabidopsis seedlings to jasmonic acid (JA) during skotomorphogenesis, possibly by modulating chromatin dynamics that affect the transcriptional regulation of JA-responsive genes.	jasmonic acid	234-236	alfin-like 6	Arabidopsis thaliana	35-38
34809577-4	2021	Dark-grown al6 seedlings showed a compromised reduction in hypocotyl elongation upon exogenously supplied JA, a response that was calibrated by the availability of Pi in the growth medium.	jasmonic acid	106-108	alfin-like 6	Arabidopsis thaliana	11-14
34834828-9	2021	The upregulation of jasmonic acid (JA)-dependent TFs (MYC2, MYB44, ERFs) but not the JA biosynthetic genes is surprising.	jasmonic acid	20-33	transcription factor MYC2	Solanum lycopersicum	54-58
34834828-9	2021	The upregulation of jasmonic acid (JA)-dependent TFs (MYC2, MYB44, ERFs) but not the JA biosynthetic genes is surprising.	jasmonic acid	35-37	transcription factor MYC2	Solanum lycopersicum	54-58
34618051-0	2021	The co-chaperone HOP3 participates in jasmonic acid signaling by regulating CORONATINE-INSENSITIVE 1 activity.	jasmonic acid	38-51	stress-inducible protein	Arabidopsis thaliana	17-21
34618068-0	2021	Jasmonates modulate sphingolipid metabolism and accelerate cell death in the ceramide kinase mutant acd5.	jasmonic acid	0-10	Diacylglycerol kinase family protein	Arabidopsis thaliana	100-104
34618051-0	2021	The co-chaperone HOP3 participates in jasmonic acid signaling by regulating CORONATINE-INSENSITIVE 1 activity.	jasmonic acid	38-51	RNI-like superfamily protein	Arabidopsis thaliana	76-100
34618068-4	2021	Here, we report that the jasmonate (JA) pathway is activated in the Arabidopsis (Arabidopsis thaliana) acd5 mutant and that methyl JA treatment accelerates ceramide accumulation and cell death in acd5.	jasmonic acid	25-34	Diacylglycerol kinase family protein	Arabidopsis thaliana	103-107
34618068-4	2021	Here, we report that the jasmonate (JA) pathway is activated in the Arabidopsis (Arabidopsis thaliana) acd5 mutant and that methyl JA treatment accelerates ceramide accumulation and cell death in acd5.	jasmonic acid	36-38	Diacylglycerol kinase family protein	Arabidopsis thaliana	103-107
34618051-3	2021	In this article we describe that a member of the HOP family, HOP3, is involved in the jasmonic acid (JA) pathway and is linked to plant defense responses not only to pathogens, but also to a generalist herbivore.	jasmonic acid	86-99	stress-inducible protein	Arabidopsis thaliana	61-65
34618068-5	2021	Moreover, the double mutants of acd5 with jasmonate resistant1-1 and coronatine insensitive1-2 exhibited delayed cell death, suggesting that the JA pathway is involved in acd5-mediated cell death.	jasmonic acid	145-147	Diacylglycerol kinase family protein	Arabidopsis thaliana	32-36
34618051-3	2021	In this article we describe that a member of the HOP family, HOP3, is involved in the jasmonic acid (JA) pathway and is linked to plant defense responses not only to pathogens, but also to a generalist herbivore.	jasmonic acid	101-103	stress-inducible protein	Arabidopsis thaliana	61-65
34618068-5	2021	Moreover, the double mutants of acd5 with jasmonate resistant1-1 and coronatine insensitive1-2 exhibited delayed cell death, suggesting that the JA pathway is involved in acd5-mediated cell death.	jasmonic acid	145-147	Auxin-responsive GH3 family protein	Arabidopsis thaliana	42-64
34618068-5	2021	Moreover, the double mutants of acd5 with jasmonate resistant1-1 and coronatine insensitive1-2 exhibited delayed cell death, suggesting that the JA pathway is involved in acd5-mediated cell death.	jasmonic acid	145-147	Diacylglycerol kinase family protein	Arabidopsis thaliana	171-175
34618088-2	2021	A co-receptor complex formed by the F-box protein Coronatine Insensitive 1 (COI1) and a Jasmonate (JA) ZIM-domain (JAZ) repressor perceives the hormone.	jasmonic acid	88-97	RNI-like superfamily protein	Arabidopsis thaliana	76-80
34618088-2	2021	A co-receptor complex formed by the F-box protein Coronatine Insensitive 1 (COI1) and a Jasmonate (JA) ZIM-domain (JAZ) repressor perceives the hormone.	jasmonic acid	99-101	RNI-like superfamily protein	Arabidopsis thaliana	76-80
34618051-5	2021	The hop3-1 mutant exhibits reduced sensitivity to JA derivatives in root growth assays and downregulation of different JA-responsive genes in response to methyl jasmonate, further revealing the relevance of HOP3 in the JA pathway.	jasmonic acid	50-52	stress-inducible protein	Arabidopsis thaliana	4-8
34618051-5	2021	The hop3-1 mutant exhibits reduced sensitivity to JA derivatives in root growth assays and downregulation of different JA-responsive genes in response to methyl jasmonate, further revealing the relevance of HOP3 in the JA pathway.	jasmonic acid	119-121	stress-inducible protein	Arabidopsis thaliana	4-8
34618051-5	2021	The hop3-1 mutant exhibits reduced sensitivity to JA derivatives in root growth assays and downregulation of different JA-responsive genes in response to methyl jasmonate, further revealing the relevance of HOP3 in the JA pathway.	jasmonic acid	119-121	stress-inducible protein	Arabidopsis thaliana	207-211
34618051-8	2021	All these data strongly suggest that, specifically among HOPs, HOP3 plays a relevant role in the JA pathway by regulating COI1 activity in response to JA and, consequently, participating in defense signaling to biotic stresses.	jasmonic acid	97-99	stress-inducible protein	Arabidopsis thaliana	63-67
34618051-8	2021	All these data strongly suggest that, specifically among HOPs, HOP3 plays a relevant role in the JA pathway by regulating COI1 activity in response to JA and, consequently, participating in defense signaling to biotic stresses.	jasmonic acid	97-99	RNI-like superfamily protein	Arabidopsis thaliana	122-126
34618088-6	2021	Interaction experiments with purified proteins indicate that J4 directly interferes with the formation of the Arabidopsis (Arabidopsis thaliana) COI1-JAZ complex otherwise induced by JA.	jasmonic acid	183-185	RNI-like superfamily protein	Arabidopsis thaliana	145-149
34618051-8	2021	All these data strongly suggest that, specifically among HOPs, HOP3 plays a relevant role in the JA pathway by regulating COI1 activity in response to JA and, consequently, participating in defense signaling to biotic stresses.	jasmonic acid	151-153	stress-inducible protein	Arabidopsis thaliana	63-67
34618051-8	2021	All these data strongly suggest that, specifically among HOPs, HOP3 plays a relevant role in the JA pathway by regulating COI1 activity in response to JA and, consequently, participating in defense signaling to biotic stresses.	jasmonic acid	151-153	RNI-like superfamily protein	Arabidopsis thaliana	122-126
34396619-3	2021	Here, we performed a genetic suppressor screen using the leaky coi1-2 (COI1Leu245Phe ) mutant for restored sensitivity to JA, and identified the intragenic suppressor mutation Leu59Phe, which was in the region connecting the F-box and leucine-rich repeats domains of COI1.	jasmonic acid	122-124	RNI-like superfamily protein	Arabidopsis thaliana	63-69
34340534-6	2021	In Arabidopsis, TIC is central to the regulation of the circadian clock and plays a crucial role in jasmonate signaling by attenuating levels of the transcription factor protein MYC2, and its mutational disruption results in enhanced susceptibility to the hemi-biotroph Pseudomonas syringae.	jasmonic acid	100-109	time for coffee	Arabidopsis thaliana	16-19
34340534-6	2021	In Arabidopsis, TIC is central to the regulation of the circadian clock and plays a crucial role in jasmonate signaling by attenuating levels of the transcription factor protein MYC2, and its mutational disruption results in enhanced susceptibility to the hemi-biotroph Pseudomonas syringae.	jasmonic acid	100-109	Basic helix-loop-helix (bHLH) DNA-binding family protein	Arabidopsis thaliana	178-182
34340534-7	2021	Our similar finding for an obligate biotroph suggests that the biochemical role of TIC in mediating disease resistance to biotrophs is conserved in grasses, and that the correct modulation of jasmonate signaling during infection by Puccinia graminis may be essential for nonhost resistance to wheat stem rust in B. distachyon.	jasmonic acid	192-201	time for coffee	Arabidopsis thaliana	83-86
34620427-9	2021	Different transcription profiles were observed under -Pi between perk13 and PERK13ox with the jasmonate zim-domain genes being repressed in perk13 and genes involved in cell wall remodeling being increased in PERK13ox.	jasmonic acid	94-103	root hair specific 10	Arabidopsis thaliana	65-71
34620427-9	2021	Different transcription profiles were observed under -Pi between perk13 and PERK13ox with the jasmonate zim-domain genes being repressed in perk13 and genes involved in cell wall remodeling being increased in PERK13ox.	jasmonic acid	94-103	root hair specific 10	Arabidopsis thaliana	76-84
34601339-2	2021	Biological induction of plant resistance against pathogens requires endogenous hormone jasmonic acid (JA) and involves profound transcriptional changes controlled by the key transcription factor MYC2.	jasmonic acid	87-100	transcription factor MYC2	Solanum lycopersicum	195-199
34601339-2	2021	Biological induction of plant resistance against pathogens requires endogenous hormone jasmonic acid (JA) and involves profound transcriptional changes controlled by the key transcription factor MYC2.	jasmonic acid	102-104	transcription factor MYC2	Solanum lycopersicum	195-199
34601339-3	2021	Arabidopsis thaliana Mediator subunit 25 (AtMED25) regulates JA-dependent defense response through interacting with MYC2.	jasmonic acid	61-63	phytochrome and flowering time regulatory protein (PFT1)	Arabidopsis thaliana	42-49
34601339-3	2021	Arabidopsis thaliana Mediator subunit 25 (AtMED25) regulates JA-dependent defense response through interacting with MYC2.	jasmonic acid	61-63	Basic helix-loop-helix (bHLH) DNA-binding family protein	Arabidopsis thaliana	116-120
34396619-3	2021	Here, we performed a genetic suppressor screen using the leaky coi1-2 (COI1Leu245Phe ) mutant for restored sensitivity to JA, and identified the intragenic suppressor mutation Leu59Phe, which was in the region connecting the F-box and leucine-rich repeats domains of COI1.	jasmonic acid	122-124	RNI-like superfamily protein	Arabidopsis thaliana	267-271
34396619-4	2021	The L59F substitution restores not only the COI1L245F function but also the COI1Gly434Glu (coi1-22rsp ) function in JA responses, through recovering their interactions with ASK1 or ASK2 and their protein levels.	jasmonic acid	116-118	RNI-like superfamily protein	Arabidopsis thaliana	76-80
34396619-4	2021	The L59F substitution restores not only the COI1L245F function but also the COI1Gly434Glu (coi1-22rsp ) function in JA responses, through recovering their interactions with ASK1 or ASK2 and their protein levels.	jasmonic acid	116-118	RNI-like superfamily protein	Arabidopsis thaliana	91-95
34396619-4	2021	The L59F substitution restores not only the COI1L245F function but also the COI1Gly434Glu (coi1-22rsp ) function in JA responses, through recovering their interactions with ASK1 or ASK2 and their protein levels.	jasmonic acid	116-118	S phase kinase-associated protein 1	Arabidopsis thaliana	173-177
34396619-4	2021	The L59F substitution restores not only the COI1L245F function but also the COI1Gly434Glu (coi1-22rsp ) function in JA responses, through recovering their interactions with ASK1 or ASK2 and their protein levels.	jasmonic acid	116-118	E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family protein	Arabidopsis thaliana	181-185
34329421-0	2021	Jasmonate inhibits adventitious root initiation through repression of CKX1 and activation of RAP2.6L transcription factor in Arabidopsis.	jasmonic acid	0-9	cytokinin oxidase/dehydrogenase 1	Arabidopsis thaliana	70-74
34745163-0	2021	Jasmonic Acid Impairs Arabidopsis Seedling Salt Stress Tolerance Through MYC2-Mediated Repression of CAT2 Expression.	jasmonic acid	0-13	Basic helix-loop-helix (bHLH) DNA-binding family protein	Arabidopsis thaliana	73-77
34745163-0	2021	Jasmonic Acid Impairs Arabidopsis Seedling Salt Stress Tolerance Through MYC2-Mediated Repression of CAT2 Expression.	jasmonic acid	0-13	catalase 2	Arabidopsis thaliana	101-105
34745163-2	2021	Here, we report that phytohormone jasmonic acid (JA) impairs plant salt stress tolerance by repressing CAT2 expression in an MYC2-dependent manner.	jasmonic acid	49-51	catalase 2	Arabidopsis thaliana	103-107
34329421-6	2021	We also found that MYC2-dependent jasmonate (JA) signaling inhibits ARI by downregulating the expression of the CYTOKININ OXIDASE/DEHYDROGENASE1 (CKX1) gene.	jasmonic acid	34-43	Basic helix-loop-helix (bHLH) DNA-binding family protein	Arabidopsis thaliana	19-23
34745163-2	2021	Here, we report that phytohormone jasmonic acid (JA) impairs plant salt stress tolerance by repressing CAT2 expression in an MYC2-dependent manner.	jasmonic acid	49-51	Basic helix-loop-helix (bHLH) DNA-binding family protein	Arabidopsis thaliana	125-129
34745163-5	2021	In addition, JA repressed CAT2 expression in salt-stressed wild-type plant but not in myc2, a mutant of the master transcriptional factor MYC2 in JA signaling, therefore, the myc2 mutant exhibited increased salt stress tolerance.	jasmonic acid	13-15	catalase 2	Arabidopsis thaliana	26-30
34329421-6	2021	We also found that MYC2-dependent jasmonate (JA) signaling inhibits ARI by downregulating the expression of the CYTOKININ OXIDASE/DEHYDROGENASE1 (CKX1) gene.	jasmonic acid	34-43	cytokinin oxidase/dehydrogenase 1	Arabidopsis thaliana	112-144
34745163-5	2021	In addition, JA repressed CAT2 expression in salt-stressed wild-type plant but not in myc2, a mutant of the master transcriptional factor MYC2 in JA signaling, therefore, the myc2 mutant exhibited increased salt stress tolerance.	jasmonic acid	13-15	Basic helix-loop-helix (bHLH) DNA-binding family protein	Arabidopsis thaliana	175-179
34329421-6	2021	We also found that MYC2-dependent jasmonate (JA) signaling inhibits ARI by downregulating the expression of the CYTOKININ OXIDASE/DEHYDROGENASE1 (CKX1) gene.	jasmonic acid	34-43	cytokinin oxidase/dehydrogenase 1	Arabidopsis thaliana	146-150
34745163-5	2021	In addition, JA repressed CAT2 expression in salt-stressed wild-type plant but not in myc2, a mutant of the master transcriptional factor MYC2 in JA signaling, therefore, the myc2 mutant exhibited increased salt stress tolerance.	jasmonic acid	146-148	Basic helix-loop-helix (bHLH) DNA-binding family protein	Arabidopsis thaliana	138-142
34329421-6	2021	We also found that MYC2-dependent jasmonate (JA) signaling inhibits ARI by downregulating the expression of the CYTOKININ OXIDASE/DEHYDROGENASE1 (CKX1) gene.	jasmonic acid	45-47	Basic helix-loop-helix (bHLH) DNA-binding family protein	Arabidopsis thaliana	19-23
34745163-7	2021	Together, our study reveals that JA impairs Arabidopsis seedling salt stress tolerance through MYC2-mediated repression of CAT2 expression.	jasmonic acid	33-35	Basic helix-loop-helix (bHLH) DNA-binding family protein	Arabidopsis thaliana	95-99
34329421-6	2021	We also found that MYC2-dependent jasmonate (JA) signaling inhibits ARI by downregulating the expression of the CYTOKININ OXIDASE/DEHYDROGENASE1 (CKX1) gene.	jasmonic acid	45-47	cytokinin oxidase/dehydrogenase 1	Arabidopsis thaliana	112-144
34745163-7	2021	Together, our study reveals that JA impairs Arabidopsis seedling salt stress tolerance through MYC2-mediated repression of CAT2 expression.	jasmonic acid	33-35	catalase 2	Arabidopsis thaliana	123-127
34329421-6	2021	We also found that MYC2-dependent jasmonate (JA) signaling inhibits ARI by downregulating the expression of the CYTOKININ OXIDASE/DEHYDROGENASE1 (CKX1) gene.	jasmonic acid	45-47	cytokinin oxidase/dehydrogenase 1	Arabidopsis thaliana	146-150
34230985-12	2021	Overexpression of miR394, however, decreased the expression of its target gene Leaf Curling Responsiveness (LCR), and suppressed the synthesis components genes of jasmonic acid (JA), depressing the resistance of tomato to P. infestans infection.	jasmonic acid	163-176	MIR394	Solanum lycopersicum	18-24
34608953-0	2021	Jasmonate regulates the FAMA/mediator complex subunit 8-THIOGLUCOSIDE GLUCOHYDROLASE 1 cascade and myrosinase activity.	jasmonic acid	0-9	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	Arabidopsis thaliana	24-28
34608953-7	2021	Further genetic and biochemical evidence showed that transcription factor FAMA interacted with a series of JASMONATE ZIM-DOMAIN proteins and affected JA-mediated myrosinase activity.	jasmonic acid	150-152	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	Arabidopsis thaliana	74-78
34608953-8	2021	However, among the JA-upregulated myrosinase genes, only THIOGLUCOSIDE GLUCOHYDROLASE 1 (TGG1) was positively regulated by FAMA.	jasmonic acid	19-21	thioglucoside glucohydrolase 1	Arabidopsis thaliana	89-93
34608953-8	2021	However, among the JA-upregulated myrosinase genes, only THIOGLUCOSIDE GLUCOHYDROLASE 1 (TGG1) was positively regulated by FAMA.	jasmonic acid	19-21	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	Arabidopsis thaliana	123-127
34608953-10	2021	Together, our results provide evidence that JA acts as an important signal upstream of the FAMA/MED8-TGG1 pathway to positively regulate myrosinase activity in Arabidopsis.	jasmonic acid	44-46	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	Arabidopsis thaliana	91-95
34608953-10	2021	Together, our results provide evidence that JA acts as an important signal upstream of the FAMA/MED8-TGG1 pathway to positively regulate myrosinase activity in Arabidopsis.	jasmonic acid	44-46	mediator subunit 8	Arabidopsis thaliana	96-100
34608953-10	2021	Together, our results provide evidence that JA acts as an important signal upstream of the FAMA/MED8-TGG1 pathway to positively regulate myrosinase activity in Arabidopsis.	jasmonic acid	44-46	thioglucoside glucohydrolase 1	Arabidopsis thaliana	101-105
34224307-5	2021	The amidohydrolases, including ILL6 and IAR3 and cytochrome P450 (CYP94B3), encoding JA-Ile catabolism were markedly depressed by ABA receptors.	jasmonic acid	85-87	IAA-amino acid hydrolase ILR1-like 6	Arabidopsis thaliana	31-35
34224307-5	2021	The amidohydrolases, including ILL6 and IAR3 and cytochrome P450 (CYP94B3), encoding JA-Ile catabolism were markedly depressed by ABA receptors.	jasmonic acid	85-87	peptidase M20/M25/M40 family protein	Arabidopsis thaliana	40-44
34224307-5	2021	The amidohydrolases, including ILL6 and IAR3 and cytochrome P450 (CYP94B3), encoding JA-Ile catabolism were markedly depressed by ABA receptors.	jasmonic acid	85-87	cytochrome P450, family 94, subfamily B, polypeptide 3	Arabidopsis thaliana	66-73
34224307-6	2021	While transcripts of the enzymes for activation of anthocyanin biosynthesis pathway were analyzed, the results indicating that JA biosynthetic genes, including allene oxide synthase (AOS), LOX3 and LOX4 were enhanced by the link of JAs and ABA receptors.	jasmonic acid	127-129	allene oxide synthase	Arabidopsis thaliana	160-181
34224307-6	2021	While transcripts of the enzymes for activation of anthocyanin biosynthesis pathway were analyzed, the results indicating that JA biosynthetic genes, including allene oxide synthase (AOS), LOX3 and LOX4 were enhanced by the link of JAs and ABA receptors.	jasmonic acid	127-129	allene oxide synthase	Arabidopsis thaliana	183-186
34224307-6	2021	While transcripts of the enzymes for activation of anthocyanin biosynthesis pathway were analyzed, the results indicating that JA biosynthetic genes, including allene oxide synthase (AOS), LOX3 and LOX4 were enhanced by the link of JAs and ABA receptors.	jasmonic acid	127-129	lipoxygenase 3	Arabidopsis thaliana	189-193
34224307-6	2021	While transcripts of the enzymes for activation of anthocyanin biosynthesis pathway were analyzed, the results indicating that JA biosynthetic genes, including allene oxide synthase (AOS), LOX3 and LOX4 were enhanced by the link of JAs and ABA receptors.	jasmonic acid	127-129	PLAT/LH2 domain-containing lipoxygenase family protein	Arabidopsis thaliana	198-202
34224307-6	2021	While transcripts of the enzymes for activation of anthocyanin biosynthesis pathway were analyzed, the results indicating that JA biosynthetic genes, including allene oxide synthase (AOS), LOX3 and LOX4 were enhanced by the link of JAs and ABA receptors.	jasmonic acid	232-235	allene oxide synthase	Arabidopsis thaliana	160-181
34224307-6	2021	While transcripts of the enzymes for activation of anthocyanin biosynthesis pathway were analyzed, the results indicating that JA biosynthetic genes, including allene oxide synthase (AOS), LOX3 and LOX4 were enhanced by the link of JAs and ABA receptors.	jasmonic acid	232-235	allene oxide synthase	Arabidopsis thaliana	183-186
34224307-6	2021	While transcripts of the enzymes for activation of anthocyanin biosynthesis pathway were analyzed, the results indicating that JA biosynthetic genes, including allene oxide synthase (AOS), LOX3 and LOX4 were enhanced by the link of JAs and ABA receptors.	jasmonic acid	232-235	lipoxygenase 3	Arabidopsis thaliana	189-193
34224307-6	2021	While transcripts of the enzymes for activation of anthocyanin biosynthesis pathway were analyzed, the results indicating that JA biosynthetic genes, including allene oxide synthase (AOS), LOX3 and LOX4 were enhanced by the link of JAs and ABA receptors.	jasmonic acid	232-235	PLAT/LH2 domain-containing lipoxygenase family protein	Arabidopsis thaliana	198-202
34691090-7	2021	Both the basal and pathogen-induced levels of salicylic acid and jasmonic acid were also significantly altered in the med18 and nrpd2a mutants.	jasmonic acid	65-78	mediator of RNA polymerase II transcription subunit	Arabidopsis thaliana	118-123
34691090-7	2021	Both the basal and pathogen-induced levels of salicylic acid and jasmonic acid were also significantly altered in the med18 and nrpd2a mutants.	jasmonic acid	65-78	nuclear RNA polymerase D2A	Arabidopsis thaliana	128-134
34691090-9	2021	The genes altered in expression in the med18 and nrpd2a mutants include disease resistance proteins, salicylic acid and jasmonic acid signaling and responses, which are known to affect resistance to necrotrophic pathogens.	jasmonic acid	120-133	mediator of RNA polymerase II transcription subunit	Arabidopsis thaliana	39-44
34691090-9	2021	The genes altered in expression in the med18 and nrpd2a mutants include disease resistance proteins, salicylic acid and jasmonic acid signaling and responses, which are known to affect resistance to necrotrophic pathogens.	jasmonic acid	120-133	nuclear RNA polymerase D2A	Arabidopsis thaliana	49-55
34230985-12	2021	Overexpression of miR394, however, decreased the expression of its target gene Leaf Curling Responsiveness (LCR), and suppressed the synthesis components genes of jasmonic acid (JA), depressing the resistance of tomato to P. infestans infection.	jasmonic acid	178-180	MIR394	Solanum lycopersicum	18-24
34539711-8	2021	The expression of JA biosynthetic genes, including AtLOX6, was altered in TaWRKY13-A-overexpressing Arabidopsis.	jasmonic acid	18-20	PLAT/LH2 domain-containing lipoxygenase family protein	Arabidopsis thaliana	51-57
34557211-7	2021	The results showed that JA biosynthetic pathway genes were highly up-regulated, whereas multiple 9-LOX pathway genes were down-regulated in the infected zmlox5-3 mutant.	jasmonic acid	24-26	linoleate 9S-lipoxygenase5	Zea mays	153-159
34329770-5	2021	Interestingly, an activation of the expression of the jasmonic acid-related reporter genes JAZ1/TIFY10A-GFP and JAZ10pro::JAZ10-GFP suggests that the halted growth of the primary root inversely correlated with expression patterns underlying the defense reaction, which may be of adaptive importance to protect roots against biotic stress.	jasmonic acid	54-67	jasmonate-zim-domain protein 1	Arabidopsis thaliana	91-95
34329770-5	2021	Interestingly, an activation of the expression of the jasmonic acid-related reporter genes JAZ1/TIFY10A-GFP and JAZ10pro::JAZ10-GFP suggests that the halted growth of the primary root inversely correlated with expression patterns underlying the defense reaction, which may be of adaptive importance to protect roots against biotic stress.	jasmonic acid	54-67	jasmonate-zim-domain protein 1	Arabidopsis thaliana	96-103
34329770-5	2021	Interestingly, an activation of the expression of the jasmonic acid-related reporter genes JAZ1/TIFY10A-GFP and JAZ10pro::JAZ10-GFP suggests that the halted growth of the primary root inversely correlated with expression patterns underlying the defense reaction, which may be of adaptive importance to protect roots against biotic stress.	jasmonic acid	54-67	jasmonate-zim-domain protein 10	Arabidopsis thaliana	112-117
34329770-5	2021	Interestingly, an activation of the expression of the jasmonic acid-related reporter genes JAZ1/TIFY10A-GFP and JAZ10pro::JAZ10-GFP suggests that the halted growth of the primary root inversely correlated with expression patterns underlying the defense reaction, which may be of adaptive importance to protect roots against biotic stress.	jasmonic acid	54-67	jasmonate-zim-domain protein 10	Arabidopsis thaliana	122-127
34489985-4	2021	In this study, we demonstrated that Ile application enhances plant resistance against B. cinerea in Arabidopsis, which is dependent on the JA receptor COI1 and the jasmonic acid-amido synthetase JAR1.	jasmonic acid	164-177	Auxin-responsive GH3 family protein	Arabidopsis thaliana	195-199
34166972-6	2021	Whereas in Utricularia the cysteine protease is present constitutively in digestive fluid, it is induced by prey and exogenous application of jasmonic acid in Aldrovanda.	jasmonic acid	142-155	cathepsin B	Homo sapiens	27-44
34176593-0	2021	Corrigendum to: The glutamate receptors AtGLR1.2 and AtGLR1.3 increase cold tolerance by regulating jasmonate signaling in Arabidopsis thaliana.	jasmonic acid	100-109	Glutamate receptor family protein	Arabidopsis thaliana	40-48
34176593-0	2021	Corrigendum to: The glutamate receptors AtGLR1.2 and AtGLR1.3 increase cold tolerance by regulating jasmonate signaling in Arabidopsis thaliana.	jasmonic acid	100-109	glutamate receptor 1.1	Arabidopsis thaliana	53-59
34746762-3	2021	Jasmonoyl-isoleucine (JA-Ile) is the most bioactive JAs, and perception of JA-Ile by its coreceptor, the Skp1-Cullin1-F-box-type (SCF) protein ubiquitin ligase complex SCFCOI1-JAZ, in the nucleus derepresses the transcriptional repression of target genes.	jasmonic acid	52-55	S-phase kinase associated protein 1	Homo sapiens	105-109
34746762-3	2021	Jasmonoyl-isoleucine (JA-Ile) is the most bioactive JAs, and perception of JA-Ile by its coreceptor, the Skp1-Cullin1-F-box-type (SCF) protein ubiquitin ligase complex SCFCOI1-JAZ, in the nucleus derepresses the transcriptional repression of target genes.	jasmonic acid	52-55	cullin 1	Homo sapiens	110-117
34746762-3	2021	Jasmonoyl-isoleucine (JA-Ile) is the most bioactive JAs, and perception of JA-Ile by its coreceptor, the Skp1-Cullin1-F-box-type (SCF) protein ubiquitin ligase complex SCFCOI1-JAZ, in the nucleus derepresses the transcriptional repression of target genes.	jasmonic acid	52-55	zinc finger protein 346	Homo sapiens	176-179
34746762-3	2021	Jasmonoyl-isoleucine (JA-Ile) is the most bioactive JAs, and perception of JA-Ile by its coreceptor, the Skp1-Cullin1-F-box-type (SCF) protein ubiquitin ligase complex SCFCOI1-JAZ, in the nucleus derepresses the transcriptional repression of target genes.	jasmonic acid	75-77	S-phase kinase associated protein 1	Homo sapiens	105-109
34746762-3	2021	Jasmonoyl-isoleucine (JA-Ile) is the most bioactive JAs, and perception of JA-Ile by its coreceptor, the Skp1-Cullin1-F-box-type (SCF) protein ubiquitin ligase complex SCFCOI1-JAZ, in the nucleus derepresses the transcriptional repression of target genes.	jasmonic acid	75-77	cullin 1	Homo sapiens	110-117
34746762-3	2021	Jasmonoyl-isoleucine (JA-Ile) is the most bioactive JAs, and perception of JA-Ile by its coreceptor, the Skp1-Cullin1-F-box-type (SCF) protein ubiquitin ligase complex SCFCOI1-JAZ, in the nucleus derepresses the transcriptional repression of target genes.	jasmonic acid	75-77	zinc finger protein 346	Homo sapiens	176-179
34539109-5	2021	Hormones analysis showed that salicylic acid (SA), 3-indoleacetic acid (IAA), abscisic acid (ABA) and gibberellic acids (GAs) were significantly increased by TERF1, while jasmonic acid (JA) was significantly reduced in TERF1 seeds.	jasmonic acid	171-184	ethylene-responsive transcription factor 1	Solanum lycopersicum	219-224
34374791-7	2022	The overall activity of antioxidant enzymes POD, CAT, GR, APX and CAT elevated during all the treatments, be it stress alone or in combination with BR and JA, compared to the control.	jasmonic acid	155-157	L-ascorbate peroxidase 1, cytosolic	Brassica rapa	58-61
34539109-5	2021	Hormones analysis showed that salicylic acid (SA), 3-indoleacetic acid (IAA), abscisic acid (ABA) and gibberellic acids (GAs) were significantly increased by TERF1, while jasmonic acid (JA) was significantly reduced in TERF1 seeds.	jasmonic acid	186-188	ethylene-responsive transcription factor 1	Solanum lycopersicum	219-224
35526420-4	2022	This study showed that TaFBA-2A could interact with TaSKP1, and TaOPR2, the crucial enzyme involving in jasmonic acid (JA) biosynthesis.	jasmonic acid	104-117	SKP1-like protein 1	Triticum aestivum	52-58
34276733-3	2021	Various mutants in this COP1/SPA complex exhibited a strongly reduced level of GSL and a low expression of jasmonate (JA)-dependent genes.	jasmonic acid	107-116	Transducin/WD40 repeat-like superfamily protein	Arabidopsis thaliana	24-28
34276733-3	2021	Various mutants in this COP1/SPA complex exhibited a strongly reduced level of GSL and a low expression of jasmonate (JA)-dependent genes.	jasmonic acid	118-120	Transducin/WD40 repeat-like superfamily protein	Arabidopsis thaliana	24-28
34276733-4	2021	Furthermore, cop1, which is known to accumulate DELLA proteins in the dark, shows reduced gibberellin (GA) and JA signaling, thereby phenocopying other DELLA-accumulating mutants.	jasmonic acid	111-113	Transducin/WD40 repeat-like superfamily protein	Arabidopsis thaliana	13-17
35164659-5	2022	The phytohormone jasmonic acid and ethylene differently regulate the Pep1-regulated cell wall consolidation.	jasmonic acid	17-30	precursor of peptide 1	Arabidopsis thaliana	69-73
34201662-0	2021	Elevating Ascorbate in Arabidopsis Stimulates the Production of Abscisic Acid, Phaseic Acid, and to a Lesser Extent Auxin (IAA) and Jasmonates, Resulting in Increased Expression of DHAR1 and Multiple Transcription Factors Associated with Abiotic Stress Tolerance.	jasmonic acid	132-142	dehydroascorbate reductase	Arabidopsis thaliana	181-186
34154522-5	2021	Moreover, WGCNA revealed three major networks involving ethylene and jasmonic acid response, cold acclimation, and chromatin modification in response to prolonged cold exposure.	jasmonic acid	69-82	cold, circadian rhythm, and rna binding 2	Arabidopsis thaliana	163-167
35526420-4	2022	This study showed that TaFBA-2A could interact with TaSKP1, and TaOPR2, the crucial enzyme involving in jasmonic acid (JA) biosynthesis.	jasmonic acid	119-121	SKP1-like protein 1	Triticum aestivum	52-58
35406959-4	2022	Linolenic acid, a precursor in the jasmonic acid (JA) biosynthesis, is converted to 12-oxo-phytodienoic acid through oxygenation with LOX, allene oxide synthase, and allene oxide cyclase.	jasmonic acid	35-48	lysyl oxidase	Homo sapiens	134-137
35594245-5	2022	The expression patterns of salicylic acid (SA) and jasmonic acid (JA) marker genes after pathogen infections in Atfdh1 mutant indicated that both SA and JA are involved in the FDH1-mediated plant defense response to both host and nonhost bacterial pathogens.	jasmonic acid	51-64	formate dehydrogenase	Arabidopsis thaliana	112-118
35594245-5	2022	The expression patterns of salicylic acid (SA) and jasmonic acid (JA) marker genes after pathogen infections in Atfdh1 mutant indicated that both SA and JA are involved in the FDH1-mediated plant defense response to both host and nonhost bacterial pathogens.	jasmonic acid	51-64	formate dehydrogenase	Arabidopsis thaliana	176-180
35594245-5	2022	The expression patterns of salicylic acid (SA) and jasmonic acid (JA) marker genes after pathogen infections in Atfdh1 mutant indicated that both SA and JA are involved in the FDH1-mediated plant defense response to both host and nonhost bacterial pathogens.	jasmonic acid	66-68	formate dehydrogenase	Arabidopsis thaliana	112-118
35594245-5	2022	The expression patterns of salicylic acid (SA) and jasmonic acid (JA) marker genes after pathogen infections in Atfdh1 mutant indicated that both SA and JA are involved in the FDH1-mediated plant defense response to both host and nonhost bacterial pathogens.	jasmonic acid	66-68	formate dehydrogenase	Arabidopsis thaliana	176-180
35594245-5	2022	The expression patterns of salicylic acid (SA) and jasmonic acid (JA) marker genes after pathogen infections in Atfdh1 mutant indicated that both SA and JA are involved in the FDH1-mediated plant defense response to both host and nonhost bacterial pathogens.	jasmonic acid	153-155	formate dehydrogenase	Arabidopsis thaliana	112-118
35594245-5	2022	The expression patterns of salicylic acid (SA) and jasmonic acid (JA) marker genes after pathogen infections in Atfdh1 mutant indicated that both SA and JA are involved in the FDH1-mediated plant defense response to both host and nonhost bacterial pathogens.	jasmonic acid	153-155	formate dehydrogenase	Arabidopsis thaliana	176-180
35543483-4	2022	The ETHYLENE RESPONSE FACTOR1 (ERF1) transcription factor integrates the ethylene and JA pathways to induce camalexin biosynthesis via directly upregulating camalexin biosynthetic genes.	jasmonic acid	86-88	ARM repeat superfamily protein	Arabidopsis thaliana	22-29
35543483-4	2022	The ETHYLENE RESPONSE FACTOR1 (ERF1) transcription factor integrates the ethylene and JA pathways to induce camalexin biosynthesis via directly upregulating camalexin biosynthetic genes.	jasmonic acid	86-88	ethylene responsive element binding factor 1	Arabidopsis thaliana	31-35
35543483-5	2022	ERF1 also interacts with and depends on WRKY33 to upregulate camalexin biosynthetic genes, indicating that ERF1 and WRKY33 form transcriptional complexes to cooperatively activate camalexin biosynthetic genes, thereby mediating the synergy of ethylene/JA and MPK3/MPK6 signaling pathways to induce camalexin biosynthesis.	jasmonic acid	252-254	ethylene responsive element binding factor 1	Arabidopsis thaliana	0-4
35543483-5	2022	ERF1 also interacts with and depends on WRKY33 to upregulate camalexin biosynthetic genes, indicating that ERF1 and WRKY33 form transcriptional complexes to cooperatively activate camalexin biosynthetic genes, thereby mediating the synergy of ethylene/JA and MPK3/MPK6 signaling pathways to induce camalexin biosynthesis.	jasmonic acid	252-254	WRKY DNA-binding protein 33	Arabidopsis thaliana	40-46
35543483-5	2022	ERF1 also interacts with and depends on WRKY33 to upregulate camalexin biosynthetic genes, indicating that ERF1 and WRKY33 form transcriptional complexes to cooperatively activate camalexin biosynthetic genes, thereby mediating the synergy of ethylene/JA and MPK3/MPK6 signaling pathways to induce camalexin biosynthesis.	jasmonic acid	252-254	ethylene responsive element binding factor 1	Arabidopsis thaliana	107-111
35543483-5	2022	ERF1 also interacts with and depends on WRKY33 to upregulate camalexin biosynthetic genes, indicating that ERF1 and WRKY33 form transcriptional complexes to cooperatively activate camalexin biosynthetic genes, thereby mediating the synergy of ethylene/JA and MPK3/MPK6 signaling pathways to induce camalexin biosynthesis.	jasmonic acid	252-254	WRKY DNA-binding protein 33	Arabidopsis thaliana	116-122
35543483-6	2022	Moreover, as an integrator of the ethylene and JA pathways, ERF1 also acts as a substrate of MPK3/MPK6, which phosphorylate ERF1 to increase its transactivation activity and therefore further cooperate with the ethylene/JA pathways to induce camalexin biosynthesis.	jasmonic acid	47-49	ethylene responsive element binding factor 1	Arabidopsis thaliana	60-64
35543483-6	2022	Moreover, as an integrator of the ethylene and JA pathways, ERF1 also acts as a substrate of MPK3/MPK6, which phosphorylate ERF1 to increase its transactivation activity and therefore further cooperate with the ethylene/JA pathways to induce camalexin biosynthesis.	jasmonic acid	47-49	mitogen-activated protein kinase 3	Arabidopsis thaliana	93-97
35543483-6	2022	Moreover, as an integrator of the ethylene and JA pathways, ERF1 also acts as a substrate of MPK3/MPK6, which phosphorylate ERF1 to increase its transactivation activity and therefore further cooperate with the ethylene/JA pathways to induce camalexin biosynthesis.	jasmonic acid	47-49	MAP kinase 6	Arabidopsis thaliana	98-102
35238951-5	2022	Silencing of SlERF.F5 causes accelerated senescence induced by age, darkness, ethylene, and jasmonic acid.	jasmonic acid	92-105	ethylene response factor 3	Solanum lycopersicum	13-21
35238951-8	2022	Suppression of SlERF.F5 resulted in increased sensitivity to ethylene and jasmonic acid, decreased accumulation of chlorophyll content, and inhibited the expression of chlorophyll- and light response-related genes.	jasmonic acid	74-87	ethylene response factor 3	Solanum lycopersicum	15-23
35238951-9	2022	Compared with the wild type, the qRT-PCR analysis showed the expression levels of genes related to the ethylene biosynthesis pathway and the jasmonic acid signaling pathway in SlERF.F5-RNAi lines increased.	jasmonic acid	141-154	ethylene response factor 3	Solanum lycopersicum	176-184
35238951-10	2022	Yeast two-hybrid experiments showed that SlERF.F5 and SlMYC2 (a transcription factor downstream of the JA receptor) can interact physically, thereby mediating the role of SlERF.F5 in jasmonic acid-induced leaf senescence.	jasmonic acid	183-196	transcription factor MYC2	Solanum lycopersicum	54-60
35238951-10	2022	Yeast two-hybrid experiments showed that SlERF.F5 and SlMYC2 (a transcription factor downstream of the JA receptor) can interact physically, thereby mediating the role of SlERF.F5 in jasmonic acid-induced leaf senescence.	jasmonic acid	183-196	ethylene response factor 3	Solanum lycopersicum	171-179
35557724-3	2022	Furthermore, we showed that IQD1 is up-regulated by jasmonic acid (JA) and downregulated by salicylic acid (SA).	jasmonic acid	52-65	IQ-domain 1	Arabidopsis thaliana	28-32
35557724-3	2022	Furthermore, we showed that IQD1 is up-regulated by jasmonic acid (JA) and downregulated by salicylic acid (SA).	jasmonic acid	67-69	IQ-domain 1	Arabidopsis thaliana	28-32
35557724-5	2022	Further examination revealed a marked reduction of SA and increases in the levels of ethylene, JA and abscisic acid response genes in the iqd1-1 line.	jasmonic acid	95-97	IQ-domain 1	Arabidopsis thaliana	138-142
35557724-6	2022	Moreover, quantification of SA, JA, and abscisic acids in IQD1 OXP  and iqd1-1 lines relative to the wild type, showed a significant reduction in endogenous JA levels in the knockout line, simultaneously with increased SA levels.	jasmonic acid	32-34	IQ-domain 1	Arabidopsis thaliana	58-62
35557724-6	2022	Moreover, quantification of SA, JA, and abscisic acids in IQD1 OXP  and iqd1-1 lines relative to the wild type, showed a significant reduction in endogenous JA levels in the knockout line, simultaneously with increased SA levels.	jasmonic acid	157-159	IQ-domain 1	Arabidopsis thaliana	58-62
35557724-6	2022	Moreover, quantification of SA, JA, and abscisic acids in IQD1 OXP  and iqd1-1 lines relative to the wild type, showed a significant reduction in endogenous JA levels in the knockout line, simultaneously with increased SA levels.	jasmonic acid	157-159	IQ-domain 1	Arabidopsis thaliana	72-76
35445272-2	2022	Here, we show that SQN acts in the jasmonic acid (JA) pathway, a major signaling pathway regulating plant responses to insect herbivory and pathogen infection.	jasmonic acid	35-48	peptidyl-prolyl cis-trans isomerase / cyclophilin-40 (CYP40) / rotamase	Arabidopsis thaliana	19-22
35445272-2	2022	Here, we show that SQN acts in the jasmonic acid (JA) pathway, a major signaling pathway regulating plant responses to insect herbivory and pathogen infection.	jasmonic acid	50-52	peptidyl-prolyl cis-trans isomerase / cyclophilin-40 (CYP40) / rotamase	Arabidopsis thaliana	19-22
35445272-5	2022	Rather, SQN positively regulates the JA pathway, as sqn loss-of-function mutants treated with B. cinerea showed reduced JA accumulation, JA response and sensitivity to JA.	jasmonic acid	37-39	peptidyl-prolyl cis-trans isomerase / cyclophilin-40 (CYP40) / rotamase	Arabidopsis thaliana	8-11
35396792-2	2022	In Arabidopsis, jasmonic acid (JA) signalling involving JASMONATE RESISTANT 1 (JAR1), which synthesizes JA-isoleucine, a signalling form of JA, promotes susceptibility to Fg.	jasmonic acid	16-29	Auxin-responsive GH3 family protein	Arabidopsis thaliana	56-77
35396792-2	2022	In Arabidopsis, jasmonic acid (JA) signalling involving JASMONATE RESISTANT 1 (JAR1), which synthesizes JA-isoleucine, a signalling form of JA, promotes susceptibility to Fg.	jasmonic acid	16-29	Auxin-responsive GH3 family protein	Arabidopsis thaliana	79-83
35396792-2	2022	In Arabidopsis, jasmonic acid (JA) signalling involving JASMONATE RESISTANT 1 (JAR1), which synthesizes JA-isoleucine, a signalling form of JA, promotes susceptibility to Fg.	jasmonic acid	31-33	Auxin-responsive GH3 family protein	Arabidopsis thaliana	56-77
35396792-2	2022	In Arabidopsis, jasmonic acid (JA) signalling involving JASMONATE RESISTANT 1 (JAR1), which synthesizes JA-isoleucine, a signalling form of JA, promotes susceptibility to Fg.	jasmonic acid	31-33	Auxin-responsive GH3 family protein	Arabidopsis thaliana	79-83
35396792-2	2022	In Arabidopsis, jasmonic acid (JA) signalling involving JASMONATE RESISTANT 1 (JAR1), which synthesizes JA-isoleucine, a signalling form of JA, promotes susceptibility to Fg.	jasmonic acid	140-142	Auxin-responsive GH3 family protein	Arabidopsis thaliana	56-77
35396792-2	2022	In Arabidopsis, jasmonic acid (JA) signalling involving JASMONATE RESISTANT 1 (JAR1), which synthesizes JA-isoleucine, a signalling form of JA, promotes susceptibility to Fg.	jasmonic acid	140-142	Auxin-responsive GH3 family protein	Arabidopsis thaliana	79-83
35594358-7	2022	Last, we show that calmodulin-binding transcriptional activators CAMTA1/2/3 are key regulators of JA-independent touch signaling.	jasmonic acid	98-100	calmodulin 1	Homo sapiens	19-29
35594358-7	2022	Last, we show that calmodulin-binding transcriptional activators CAMTA1/2/3 are key regulators of JA-independent touch signaling.	jasmonic acid	98-100	calmodulin binding transcription activator 1	Homo sapiens	65-75
35543483-6	2022	Moreover, as an integrator of the ethylene and JA pathways, ERF1 also acts as a substrate of MPK3/MPK6, which phosphorylate ERF1 to increase its transactivation activity and therefore further cooperate with the ethylene/JA pathways to induce camalexin biosynthesis.	jasmonic acid	220-222	ethylene responsive element binding factor 1	Arabidopsis thaliana	60-64
35543483-6	2022	Moreover, as an integrator of the ethylene and JA pathways, ERF1 also acts as a substrate of MPK3/MPK6, which phosphorylate ERF1 to increase its transactivation activity and therefore further cooperate with the ethylene/JA pathways to induce camalexin biosynthesis.	jasmonic acid	220-222	mitogen-activated protein kinase 3	Arabidopsis thaliana	93-97
35543483-6	2022	Moreover, as an integrator of the ethylene and JA pathways, ERF1 also acts as a substrate of MPK3/MPK6, which phosphorylate ERF1 to increase its transactivation activity and therefore further cooperate with the ethylene/JA pathways to induce camalexin biosynthesis.	jasmonic acid	220-222	MAP kinase 6	Arabidopsis thaliana	98-102
35543483-6	2022	Moreover, as an integrator of the ethylene and JA pathways, ERF1 also acts as a substrate of MPK3/MPK6, which phosphorylate ERF1 to increase its transactivation activity and therefore further cooperate with the ethylene/JA pathways to induce camalexin biosynthesis.	jasmonic acid	220-222	ethylene responsive element binding factor 1	Arabidopsis thaliana	124-128
35543483-7	2022	Taken together, our data reveal the multilayered synergistic regulation of camalexin biosynthesis by ethylene, JA, and MPK3/MPK6 signaling pathways via ERF1 and WRKY33 transcription factors in Arabidopsis.	jasmonic acid	111-113	ethylene responsive element binding factor 1	Arabidopsis thaliana	152-156
35338957-0	2022	Arabidopsis thaliana AtHRS1 gene is involved in the response to Heterodera schachtii infection and its overexpression hampers development of syncytia and involves a jasmonic acid-dependent mechanism.	jasmonic acid	165-178	myb-like transcription factor family protein	Arabidopsis thaliana	21-27
35627150-12	2022	Simultaneously, reactive oxygen species accumulation; the H2O2, salicylic acid, and jasmonic acid contents; and callose deposition were significantly decreased in cotton plants with GhPRA1.B1-1A silencing.	jasmonic acid	84-97	26S proteasome regulatory subunit S10B homolog B	Gossypium hirsutum	182-188
35445272-5	2022	Rather, SQN positively regulates the JA pathway, as sqn loss-of-function mutants treated with B. cinerea showed reduced JA accumulation, JA response and sensitivity to JA.	jasmonic acid	37-39	peptidyl-prolyl cis-trans isomerase / cyclophilin-40 (CYP40) / rotamase	Arabidopsis thaliana	52-55
35445272-5	2022	Rather, SQN positively regulates the JA pathway, as sqn loss-of-function mutants treated with B. cinerea showed reduced JA accumulation, JA response and sensitivity to JA.	jasmonic acid	120-122	peptidyl-prolyl cis-trans isomerase / cyclophilin-40 (CYP40) / rotamase	Arabidopsis thaliana	8-11
35445272-5	2022	Rather, SQN positively regulates the JA pathway, as sqn loss-of-function mutants treated with B. cinerea showed reduced JA accumulation, JA response and sensitivity to JA.	jasmonic acid	120-122	peptidyl-prolyl cis-trans isomerase / cyclophilin-40 (CYP40) / rotamase	Arabidopsis thaliana	52-55
35445272-5	2022	Rather, SQN positively regulates the JA pathway, as sqn loss-of-function mutants treated with B. cinerea showed reduced JA accumulation, JA response and sensitivity to JA.	jasmonic acid	137-139	peptidyl-prolyl cis-trans isomerase / cyclophilin-40 (CYP40) / rotamase	Arabidopsis thaliana	8-11
35445272-5	2022	Rather, SQN positively regulates the JA pathway, as sqn loss-of-function mutants treated with B. cinerea showed reduced JA accumulation, JA response and sensitivity to JA.	jasmonic acid	137-139	peptidyl-prolyl cis-trans isomerase / cyclophilin-40 (CYP40) / rotamase	Arabidopsis thaliana	52-55
35445272-5	2022	Rather, SQN positively regulates the JA pathway, as sqn loss-of-function mutants treated with B. cinerea showed reduced JA accumulation, JA response and sensitivity to JA.	jasmonic acid	168-170	peptidyl-prolyl cis-trans isomerase / cyclophilin-40 (CYP40) / rotamase	Arabidopsis thaliana	8-11
35445272-5	2022	Rather, SQN positively regulates the JA pathway, as sqn loss-of-function mutants treated with B. cinerea showed reduced JA accumulation, JA response and sensitivity to JA.	jasmonic acid	168-170	peptidyl-prolyl cis-trans isomerase / cyclophilin-40 (CYP40) / rotamase	Arabidopsis thaliana	52-55
35445272-8	2022	These results suggest that SQN positively modulate plant resistance to B. cinerea through the JA pathway, and the miR156-SPL9 module functions as a bridge between SQN and JA to mediate plant resistance to this pathogen.	jasmonic acid	94-96	peptidyl-prolyl cis-trans isomerase / cyclophilin-40 (CYP40) / rotamase	Arabidopsis thaliana	27-30
35445272-8	2022	These results suggest that SQN positively modulate plant resistance to B. cinerea through the JA pathway, and the miR156-SPL9 module functions as a bridge between SQN and JA to mediate plant resistance to this pathogen.	jasmonic acid	171-173	squamosa promoter binding protein-like 9	Arabidopsis thaliana	121-125
35436324-8	2022	Transcript levels of ACER were also negatively regulated by jasmonates, and this process involves the transcription factor MYC2.	jasmonic acid	60-70	Basic helix-loop-helix (bHLH) DNA-binding family protein	Arabidopsis thaliana	123-127
35399062-2	2022	The Arabidopsis thaliana HISTONE DEACETYLASE 6 is part of the CORONATINE INSENSITIVE1 receptor complex, co-repressing the HDA6/COI1-dependent acetic acid-JA pathway that confers plant drought tolerance.	jasmonic acid	154-156	histone deacetylase 6	Arabidopsis thaliana	25-46
35399062-2	2022	The Arabidopsis thaliana HISTONE DEACETYLASE 6 is part of the CORONATINE INSENSITIVE1 receptor complex, co-repressing the HDA6/COI1-dependent acetic acid-JA pathway that confers plant drought tolerance.	jasmonic acid	154-156	histone deacetylase 6	Arabidopsis thaliana	122-126
35399062-2	2022	The Arabidopsis thaliana HISTONE DEACETYLASE 6 is part of the CORONATINE INSENSITIVE1 receptor complex, co-repressing the HDA6/COI1-dependent acetic acid-JA pathway that confers plant drought tolerance.	jasmonic acid	154-156	RNI-like superfamily protein	Arabidopsis thaliana	127-131
35399062-3	2022	The decrease in HDA6 binding to target DNA mirrors histone H4 acetylation (H4Ac) changes during JA-mediated drought response, and mutations in HDA6 also cause depletion in the constitutive repressive marker H3 lysine 27 trimethylation (H3K27me3).	jasmonic acid	96-98	histone deacetylase 6	Arabidopsis thaliana	16-20
35399062-3	2022	The decrease in HDA6 binding to target DNA mirrors histone H4 acetylation (H4Ac) changes during JA-mediated drought response, and mutations in HDA6 also cause depletion in the constitutive repressive marker H3 lysine 27 trimethylation (H3K27me3).	jasmonic acid	96-98	histone deacetylase 6	Arabidopsis thaliana	143-147
35399062-8	2022	H4ac and H3K27me3 enrichment also differentially affects JAs and HDA6-mediated genome integrity and gene regulatory networks, substantiating the role of HDA6 interacting with specific families of transposable elements in planta and highlighting further specificity of action as well as novel targets of HDA6 in the context of JA signalling for abiotic and biotic stress responses.	jasmonic acid	326-328	histone deacetylase 6	Arabidopsis thaliana	153-157
35404431-5	2022	We then used DEFECTIVE IN ANTHER DEHISCENCE1 (DAD1) as a model wound-responsive lipase to demonstrate that although its transient expression in leaves can elicit JA biosynthesis to a low level, an additional level of activation is triggered by wounding, which causes massive accumulation of JA.	jasmonic acid	162-164	alpha/beta-Hydrolases superfamily protein	Arabidopsis thaliana	46-50
35404431-5	2022	We then used DEFECTIVE IN ANTHER DEHISCENCE1 (DAD1) as a model wound-responsive lipase to demonstrate that although its transient expression in leaves can elicit JA biosynthesis to a low level, an additional level of activation is triggered by wounding, which causes massive accumulation of JA.	jasmonic acid	291-293	alpha/beta-Hydrolases superfamily protein	Arabidopsis thaliana	46-50
35404431-6	2022	This wound-triggered boosting effect of DAD1-mediated JA synthesis can happen directly in damaged leaves or indirectly in undamaged remote leaves by the systemically transmitted wound signal.	jasmonic acid	54-56	alpha/beta-Hydrolases superfamily protein	Arabidopsis thaliana	40-44
35406959-4	2022	Linolenic acid, a precursor in the jasmonic acid (JA) biosynthesis, is converted to 12-oxo-phytodienoic acid through oxygenation with LOX, allene oxide synthase, and allene oxide cyclase.	jasmonic acid	50-52	lysyl oxidase	Homo sapiens	134-137
35378389-4	2022	Here, we report that tomato MYC2, a key factor in the JA signal transduction, functions in JA-induced tomato leaf senescence by promoting chlorophyll degradation and inhibiting photosynthetic carbon fixation.	jasmonic acid	54-56	transcription factor MYC2	Solanum lycopersicum	28-32
35432433-0	2022	The Oncidium Ethylene Synthesis Gene Oncidium 1-Aminocyclopropane-1 Carboxylic Acid Synthase 12 and Ethylene Receptor Gene Oncidium ETR1 Affect GA-DELLA and Jasmonic Acid Signaling in Regulating Flowering Time, Anther Dehiscence, and Flower Senescence in Arabidopsis.	jasmonic acid	157-170	Signal transduction histidine kinase, hybrid-type, ethylene sensor	Arabidopsis thaliana	132-136
35432433-10	2022	These results not only provide new insight into the functions of ACS and ETR1 orthologs but also uncover their functional interactions with other hormone signaling pathways, such as GA-DELLA and JA, in plants.	jasmonic acid	195-197	acetyl-CoA synthetase	Arabidopsis thaliana	65-68
35432433-10	2022	These results not only provide new insight into the functions of ACS and ETR1 orthologs but also uncover their functional interactions with other hormone signaling pathways, such as GA-DELLA and JA, in plants.	jasmonic acid	195-197	Signal transduction histidine kinase, hybrid-type, ethylene sensor	Arabidopsis thaliana	73-77
35061924-6	2022	During infection, an opposite regulation in the two branches of the JA pathway (ERF1/PDF1.2 and MYC2/VSP2) occurs in high Pi plants.	jasmonic acid	68-70	ethylene responsive element binding factor 1	Arabidopsis thaliana	80-84
35061924-6	2022	During infection, an opposite regulation in the two branches of the JA pathway (ERF1/PDF1.2 and MYC2/VSP2) occurs in high Pi plants.	jasmonic acid	68-70	plant defensin 1.2	Arabidopsis thaliana	85-91
35061924-6	2022	During infection, an opposite regulation in the two branches of the JA pathway (ERF1/PDF1.2 and MYC2/VSP2) occurs in high Pi plants.	jasmonic acid	68-70	Basic helix-loop-helix (bHLH) DNA-binding family protein	Arabidopsis thaliana	96-100
35061924-6	2022	During infection, an opposite regulation in the two branches of the JA pathway (ERF1/PDF1.2 and MYC2/VSP2) occurs in high Pi plants.	jasmonic acid	68-70	vegetative storage protein 2	Arabidopsis thaliana	101-105
35378389-0	2022	SlMYC2 mediates jasmonate-induced tomato leaf senescence by promoting chlorophyll degradation and repressing carbon fixation.	jasmonic acid	16-25	transcription factor MYC2	Solanum lycopersicum	0-6
35378389-4	2022	Here, we report that tomato MYC2, a key factor in the JA signal transduction, functions in JA-induced tomato leaf senescence by promoting chlorophyll degradation and inhibiting photosynthetic carbon fixation.	jasmonic acid	91-93	transcription factor MYC2	Solanum lycopersicum	28-32
35378389-9	2022	Taken together, these results favor that tomato MYC2 acts positively in the regulation of JA-dependent tomato leaf senescence.	jasmonic acid	90-92	transcription factor MYC2	Solanum lycopersicum	48-52
35092410-6	2022	However, the role of AtOZF1 in JA signaling was not known.	jasmonic acid	31-33	CCCH-type zinc finger family protein	Arabidopsis thaliana	21-27
35323984-0	2022	Exogenous application of acetic acid enhances drought tolerance by influencing the MAPK signaling pathway induced by ABA and JA in apple plants.	jasmonic acid	125-127	mitogen-activated protein kinase homolog D5	Malus domestica	83-87
35323984-9	2022	Collectively, the results showed that external application of AA enhanced drought tolerance in apple plants by influencing the ABA- and JA-induced MAPK signaling pathways.	jasmonic acid	136-138	mitogen-activated protein kinase homolog D5	Malus domestica	147-151
35270123-5	2022	Further, photosynthetic pigments Chl a and Chl b increased at low concentrations of salt and exogenous JA.	jasmonic acid	103-105	chloroplastic lipocalin	Glycine max	33-36
35270123-5	2022	Further, photosynthetic pigments Chl a and Chl b increased at low concentrations of salt and exogenous JA.	jasmonic acid	103-105	chloroplastic lipocalin	Glycine max	43-46
35185952-3	2021	In plants, SKP1/CULLIN1/F-BOX PROTEIN (SCF)-type E3 ubiquitin ligases are essential for the perception and signaling of several key hormones including auxins and jasmonates (JAs).	jasmonic acid	174-177	S phase kinase-associated protein 1	Arabidopsis thaliana	11-15
35185952-3	2021	In plants, SKP1/CULLIN1/F-BOX PROTEIN (SCF)-type E3 ubiquitin ligases are essential for the perception and signaling of several key hormones including auxins and jasmonates (JAs).	jasmonic acid	174-177	cullin 1	Arabidopsis thaliana	16-23
35185952-4	2021	F-box proteins, TRANSPORT INHIBITOR RESPONSE 1 (TIR1) and CORONATINE INSENSITIVE 1 (COI1), bind directly transcriptional repressors AUXIN/INDOLE-3-ACETIC ACID (AUX/IAA) and JASMONATE ZIM-DOMAIN (JAZ) in auxin- and JAs-depending manner, respectively, which permits the perception of the hormones and transcriptional activation of signaling pathways.	jasmonic acid	173-182	F-box/RNI-like superfamily protein	Arabidopsis thaliana	16-46
35185952-4	2021	F-box proteins, TRANSPORT INHIBITOR RESPONSE 1 (TIR1) and CORONATINE INSENSITIVE 1 (COI1), bind directly transcriptional repressors AUXIN/INDOLE-3-ACETIC ACID (AUX/IAA) and JASMONATE ZIM-DOMAIN (JAZ) in auxin- and JAs-depending manner, respectively, which permits the perception of the hormones and transcriptional activation of signaling pathways.	jasmonic acid	173-182	F-box/RNI-like superfamily protein	Arabidopsis thaliana	48-52
35185952-4	2021	F-box proteins, TRANSPORT INHIBITOR RESPONSE 1 (TIR1) and CORONATINE INSENSITIVE 1 (COI1), bind directly transcriptional repressors AUXIN/INDOLE-3-ACETIC ACID (AUX/IAA) and JASMONATE ZIM-DOMAIN (JAZ) in auxin- and JAs-depending manner, respectively, which permits the perception of the hormones and transcriptional activation of signaling pathways.	jasmonic acid	173-182	RNI-like superfamily protein	Arabidopsis thaliana	58-82
35185952-4	2021	F-box proteins, TRANSPORT INHIBITOR RESPONSE 1 (TIR1) and CORONATINE INSENSITIVE 1 (COI1), bind directly transcriptional repressors AUXIN/INDOLE-3-ACETIC ACID (AUX/IAA) and JASMONATE ZIM-DOMAIN (JAZ) in auxin- and JAs-depending manner, respectively, which permits the perception of the hormones and transcriptional activation of signaling pathways.	jasmonic acid	173-182	RNI-like superfamily protein	Arabidopsis thaliana	84-88
35185952-10	2021	Overexpression of non-nitrosable ask1 mutant protein impaired the activation of JA-responsive genes mediated by SCFCOI1 illustrating the functional relevance of this redox-mediated regulation in planta.	jasmonic acid	80-82	S phase kinase-associated protein 1	Arabidopsis thaliana	33-37
35185952-10	2021	Overexpression of non-nitrosable ask1 mutant protein impaired the activation of JA-responsive genes mediated by SCFCOI1 illustrating the functional relevance of this redox-mediated regulation in planta.	jasmonic acid	80-82	RNI-like superfamily protein	Arabidopsis thaliana	112-119
34555166-6	2022	Together, our data revealed that MdABI4 integrates jasmonic acid (JA) and ABA signals to delicately modulate cold tolerance through the JAZ-ABI4-ICE1-CBF regulatory cascade in apple.	jasmonic acid	51-64	transcription factor ICE1-like	Malus domestica	145-149
34555166-6	2022	Together, our data revealed that MdABI4 integrates jasmonic acid (JA) and ABA signals to delicately modulate cold tolerance through the JAZ-ABI4-ICE1-CBF regulatory cascade in apple.	jasmonic acid	66-68	transcription factor ICE1-like	Malus domestica	145-149
34626184-7	2022	The accumulation of pectin and cellulose in the cell wall of sks13 pollen tubes was altered, and the content of jasmonic acid (JA) in the sks13 pollen was reduced.	jasmonic acid	112-125	SKU5 similar 13	Arabidopsis thaliana	138-143
34626184-7	2022	The accumulation of pectin and cellulose in the cell wall of sks13 pollen tubes was altered, and the content of jasmonic acid (JA) in the sks13 pollen was reduced.	jasmonic acid	127-129	SKU5 similar 13	Arabidopsis thaliana	138-143
34626184-9	2022	Our results suggest that SKS13 is essential for pollen tube growth in the transmitting tract by mediating the biosynthesis of JA that modifies the components of pollen tube cell walls.	jasmonic acid	126-128	SKU5 similar 13	Arabidopsis thaliana	25-30
34651644-5	2022	Both FBN2 and FBN1s interact with allene oxide synthase (AOS), and the elimination of any of these FBNs results in a delay in jasmonate-mediated anthocyanin accumulation in response to a combination of moderate high light and low temperature.	jasmonic acid	126-135	allene oxide synthase	Arabidopsis thaliana	57-60
35043181-5	2022	In the present study, the small molecule isoquinoline compound ZINC71820901 (lyn3) was obtained from the ZINC molecular library through virtual screening based on the structure of the crystal COI1-JAZ1 co-receptor and was found to act as an inhibitor of the JA signaling pathway both in Arabidopsis and tea plants.	jasmonic acid	258-260	RNI-like superfamily protein	Arabidopsis thaliana	192-196
35043181-5	2022	In the present study, the small molecule isoquinoline compound ZINC71820901 (lyn3) was obtained from the ZINC molecular library through virtual screening based on the structure of the crystal COI1-JAZ1 co-receptor and was found to act as an inhibitor of the JA signaling pathway both in Arabidopsis and tea plants.	jasmonic acid	258-260	jasmonate-zim-domain protein 1	Arabidopsis thaliana	197-201
35055063-9	2022	We found that in addition to the jasmonic acid and salicylic acid pathways, MPK4 is involved in polyamine synthesis and photosynthesis.	jasmonic acid	33-46	MAP kinase 4	Arabidopsis thaliana	76-80
34463334-8	2022	The increased susceptibility to PcBMM infection was not due to the diminished expression of genes involved in the salicylic acid, ethylene, or jasmonate pathways since they were constitutively upregulated in hma2hma4 plants.	jasmonic acid	143-152	heavy metal atpase 2	Arabidopsis thaliana	208-216
35343247-5	2022	The mutant acp1 plants have reduced levels of linolenic acid (18:3), which is the primary precursor for the biosynthesis of the phytohormone jasmonic acid (JA), and a corresponding decrease in the abundance of JA.	jasmonic acid	156-158	acyl carrier protein 1	Arabidopsis thaliana	11-15
35343247-5	2022	The mutant acp1 plants have reduced levels of linolenic acid (18:3), which is the primary precursor for the biosynthesis of the phytohormone jasmonic acid (JA), and a corresponding decrease in the abundance of JA.	jasmonic acid	210-212	acyl carrier protein 1	Arabidopsis thaliana	11-15
35343247-6	2022	Consistent with the known antagonistic relationship between JA and salicylic acid (SA), acp1 mutant plants also accumulate higher level of SA and display the corresponding shifts in JA- and SA-regulated transcriptional outputs.	jasmonic acid	60-62	acyl carrier protein 1	Arabidopsis thaliana	88-92
35343247-6	2022	Consistent with the known antagonistic relationship between JA and salicylic acid (SA), acp1 mutant plants also accumulate higher level of SA and display the corresponding shifts in JA- and SA-regulated transcriptional outputs.	jasmonic acid	182-184	acyl carrier protein 1	Arabidopsis thaliana	88-92
35386673-13	2022	In addition, it was revealed that ZS-3 activates salicylic acid (NPR1 and PR1) and jasmonic acid/ethylene (AOS, LOX2, PDF1.2, and ERF1) signaling pathways to induce systemic tolerance, thereby inducing salt tolerance in plants.	jasmonic acid	83-96	lipoxygenase 2	Arabidopsis thaliana	112-116
35386673-13	2022	In addition, it was revealed that ZS-3 activates salicylic acid (NPR1 and PR1) and jasmonic acid/ethylene (AOS, LOX2, PDF1.2, and ERF1) signaling pathways to induce systemic tolerance, thereby inducing salt tolerance in plants.	jasmonic acid	83-96	plant defensin 1.2	Arabidopsis thaliana	118-124
35386673-13	2022	In addition, it was revealed that ZS-3 activates salicylic acid (NPR1 and PR1) and jasmonic acid/ethylene (AOS, LOX2, PDF1.2, and ERF1) signaling pathways to induce systemic tolerance, thereby inducing salt tolerance in plants.	jasmonic acid	83-96	ethylene responsive element binding factor 1	Arabidopsis thaliana	130-134
35371134-12	2022	PIF4 is also involving JA and/or ET signaling pathway.	jasmonic acid	23-25	phytochrome interacting factor 4	Arabidopsis thaliana	0-4
34523687-3	2022	MeJA (methyl jasmonate) treatment induces the whole-plant senescence of tobacco in a light-intensity-dependent manner, which is suppressed by silencing of NtCOI1 that encodes the receptor protein of JA-Ile (the bioactive derivative of JA).	jasmonic acid	235-237	coronatine-insensitive protein 1-like	Nicotiana tabacum	155-161
34601578-1	2022	MYB transcription factors play essential roles in regulating plant secondary metabolism and jasmonate (JA) signaling.	jasmonic acid	92-101	uncharacterized protein LOC107775040	Nicotiana tabacum	0-3
34601578-1	2022	MYB transcription factors play essential roles in regulating plant secondary metabolism and jasmonate (JA) signaling.	jasmonic acid	103-105	uncharacterized protein LOC107775040	Nicotiana tabacum	0-3
35053122-6	2022	Our results suggest that the overall function of the wild-type ProSys is more complex than previously shown, as it might activate at least two tomato defense pathways: the well-known Sys-dependent pathway connected with the induction of jasmonic acid biosynthesis and the successive activation of a set of defense-related genes, and the ProSys(1-178)-dependent pathway associated with OGs production leading to the OGs mediate plant immunity.	jasmonic acid	237-250	systemin	Solanum lycopersicum	183-186
35017563-5	2022	The atmyb60-1 mutant shows reduced stomatal opening and accumulates increased levels of 12-oxo-phytodienoic acid (12-OPDA), jasmonic acid (JA) and jasmonoyl-L-isoleucine (JA-Ile) in guard cells.	jasmonic acid	124-137	myb domain protein 60	Arabidopsis thaliana	4-11
35017563-5	2022	The atmyb60-1 mutant shows reduced stomatal opening and accumulates increased levels of 12-oxo-phytodienoic acid (12-OPDA), jasmonic acid (JA) and jasmonoyl-L-isoleucine (JA-Ile) in guard cells.	jasmonic acid	139-141	myb domain protein 60	Arabidopsis thaliana	4-11
35092410-9	2022	AtOZF1 positively regulates the expression of JA inducible genes like PDF1.2, VSP2, THI2.1, and ORA59.	jasmonic acid	46-48	CCCH-type zinc finger family protein	Arabidopsis thaliana	0-6
35092410-9	2022	AtOZF1 positively regulates the expression of JA inducible genes like PDF1.2, VSP2, THI2.1, and ORA59.	jasmonic acid	46-48	plant defensin 1.2	Arabidopsis thaliana	70-76
35092410-9	2022	AtOZF1 positively regulates the expression of JA inducible genes like PDF1.2, VSP2, THI2.1, and ORA59.	jasmonic acid	46-48	vegetative storage protein 2	Arabidopsis thaliana	78-82
35092410-9	2022	AtOZF1 positively regulates the expression of JA inducible genes like PDF1.2, VSP2, THI2.1, and ORA59.	jasmonic acid	46-48	thionin 2.1	Arabidopsis thaliana	84-90
35092410-9	2022	AtOZF1 positively regulates the expression of JA inducible genes like PDF1.2, VSP2, THI2.1, and ORA59.	jasmonic acid	46-48	octadecanoid-responsive AP2/ERF 59	Arabidopsis thaliana	96-101
35092410-10	2022	AtOZF1 takes part in SA-JA cross-talk to an extent similar to that of NPR1.	jasmonic acid	24-26	CCCH-type zinc finger family protein	Arabidopsis thaliana	0-6
34655240-5	2022	Notably, TRK1 and SlLYK1 regulate SlMYC2, a major transcriptional regulator of jasmonic acid (JA) responses and fungal resistance, at transcriptional and post-transcriptional levels.	jasmonic acid	79-92	transcription factor MYC2	Solanum lycopersicum	34-40
34655240-5	2022	Notably, TRK1 and SlLYK1 regulate SlMYC2, a major transcriptional regulator of jasmonic acid (JA) responses and fungal resistance, at transcriptional and post-transcriptional levels.	jasmonic acid	94-96	transcription factor MYC2	Solanum lycopersicum	34-40
34009665-1	2021	In response to jasmonates (JAs), the JA receptor Coronatine Insensitive 1 (COI1) recruits JA-ZIM-domain (JAZ) family repressors for destruction to regulate plant growth, development, and defense.	jasmonic acid	15-25	RNI-like superfamily protein	Arabidopsis thaliana	49-73
34009665-1	2021	In response to jasmonates (JAs), the JA receptor Coronatine Insensitive 1 (COI1) recruits JA-ZIM-domain (JAZ) family repressors for destruction to regulate plant growth, development, and defense.	jasmonic acid	15-25	RNI-like superfamily protein	Arabidopsis thaliana	75-79
33474772-6	2021	We also identified a HD-ZIP gene, SlHD8, as the downstream regulator of JA signaling that promotes trichome elongation.	jasmonic acid	72-74	bZIP transcription factor	Solanum lycopersicum	24-27
34009665-1	2021	In response to jasmonates (JAs), the JA receptor Coronatine Insensitive 1 (COI1) recruits JA-ZIM-domain (JAZ) family repressors for destruction to regulate plant growth, development, and defense.	jasmonic acid	27-30	RNI-like superfamily protein	Arabidopsis thaliana	49-73
34009665-1	2021	In response to jasmonates (JAs), the JA receptor Coronatine Insensitive 1 (COI1) recruits JA-ZIM-domain (JAZ) family repressors for destruction to regulate plant growth, development, and defense.	jasmonic acid	27-30	RNI-like superfamily protein	Arabidopsis thaliana	75-79
34009665-7	2021	The undecuple jaz1/2/3/4/5/6/7/9/10/11/12 (jaz1-7,9-12) mutations enhance JA responses, and suppress the phenotypes of coi1-1 in flowering time, rosette growth and defense.	jasmonic acid	74-76	jasmonate-zim-domain protein 12	Arabidopsis thaliana	14-41
34009665-7	2021	The undecuple jaz1/2/3/4/5/6/7/9/10/11/12 (jaz1-7,9-12) mutations enhance JA responses, and suppress the phenotypes of coi1-1 in flowering time, rosette growth and defense.	jasmonic acid	74-76	jasmonate-zim-domain protein 1	Arabidopsis thaliana	14-18
34009665-7	2021	The undecuple jaz1/2/3/4/5/6/7/9/10/11/12 (jaz1-7,9-12) mutations enhance JA responses, and suppress the phenotypes of coi1-1 in flowering time, rosette growth and defense.	jasmonic acid	74-76	RNI-like superfamily protein	Arabidopsis thaliana	119-123
34009665-8	2021	The JA hypersensitivity of jaz1-7,9-12 in root growth, hook curvature, and leaf yellowing is blocked by coi1-1.	jasmonic acid	4-6	jasmonate-zim-domain protein 1	Arabidopsis thaliana	27-31
34009665-8	2021	The JA hypersensitivity of jaz1-7,9-12 in root growth, hook curvature, and leaf yellowing is blocked by coi1-1.	jasmonic acid	4-6	RNI-like superfamily protein	Arabidopsis thaliana	104-108
34009665-10	2021	jaz1-7,9-12 affects JA-regulated transcriptional profile, and recovers a fraction of that in coi1-1.	jasmonic acid	20-22	jasmonate-zim-domain protein 1	Arabidopsis thaliana	0-4
33530106-6	2021	jar1-1 (jasmonate-resistant 1, JAR1) mutant, mutants of coronatine-insensitive 1 (coi1-2) and myc2 defective in JA signaling showed insensitivity to B deficiency.	jasmonic acid	8-17	Auxin-responsive GH3 family protein	Arabidopsis thaliana	0-6
33530106-10	2021	Therefore, our findings revealed that JA, which is involved in the inhibition of root growth under B deficiency, is regulated by JAR1 activated JA and ethylene signaling pathways.	jasmonic acid	38-40	Auxin-responsive GH3 family protein	Arabidopsis thaliana	129-133
33752238-0	2021	GRAS-domain transcription factor PAT1 regulates jasmonic acid biosynthesis in grape cold stress response.	jasmonic acid	48-61	GRAS family transcription factor	Arabidopsis thaliana	33-37
32949013-10	2021	Monodehydroascorbate reductase (MDHAR), dehydroascorbate reductase (DHAR) and proline contents decreased in the seedlings treated with JA under salinity stress, whereas the ascorbate (AsA) content increased with JA treatment combined with NaCl stress.	jasmonic acid	135-137	monodehydroascorbate reductase	Glycine max	0-30
32949013-10	2021	Monodehydroascorbate reductase (MDHAR), dehydroascorbate reductase (DHAR) and proline contents decreased in the seedlings treated with JA under salinity stress, whereas the ascorbate (AsA) content increased with JA treatment combined with NaCl stress.	jasmonic acid	135-137	monodehydroascorbate reductase	Glycine max	32-37
33759251-0	2021	Jasmonate induces anthocyanin and proanthocyanidin biosynthesis in apple by mediating the JAZ1-TRB1-MYB9 complex.	jasmonic acid	0-9	myb-related protein 308-like	Malus domestica	100-104
33759251-7	2021	These results show that the JAZ1-TRB1-MYB9 module dynamically modulates JA-mediated anthocyanin and proanthocyanidin accumulation.	jasmonic acid	28-30	myb-related protein 308-like	Malus domestica	38-42
33752238-7	2021	Transcriptome analysis revealed VaPAT1 and VaIDD3 overexpression and cold treatment coordinately modulate the expression of stress-related genes including lipoxygenase 3 (LOX3), a gene encoding a key jasmonate biosynthesis enzyme.	jasmonic acid	200-209	lipoxygenase 3	Arabidopsis thaliana	155-169
33752238-7	2021	Transcriptome analysis revealed VaPAT1 and VaIDD3 overexpression and cold treatment coordinately modulate the expression of stress-related genes including lipoxygenase 3 (LOX3), a gene encoding a key jasmonate biosynthesis enzyme.	jasmonic acid	200-209	lipoxygenase 3	Arabidopsis thaliana	171-175
33689093-9	2021	Finally, TCP2 was shown to influence hypocotyl elongation by mediating the jasmonate signaling pathway.	jasmonic acid	75-84	TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2	Arabidopsis thaliana	9-13
33713138-5	2021	Interestingly, med8 seedlings were more tolerant to oxidative stress generated by the herbicide methyl viologen and exhibited transcriptional hyperactivation of defense signaling, in particular salicylic acid- and jasmonic acid-related pathways.	jasmonic acid	214-227	mediator subunit 8	Arabidopsis thaliana	15-19
33713138-6	2021	The med8-triggered tolerance to methyl viologen was manipulated by introduction of secondary mutations in salicylic acid and jasmonic acid pathways.	jasmonic acid	125-138	mediator subunit 8	Arabidopsis thaliana	4-8
33119890-0	2021	Apple B-box protein BBX37 regulates jasmonic acid-mediated cold tolerance through the JAZ-BBX37-ICE1-CBF pathway and undergoes MIEL1-mediated ubiquitination and degradation.	jasmonic acid	36-49	transcription factor ICE1-like	Malus domestica	96-100
33190219-6	2021	Silencing two of these early responders in N. attenuata (JAL1 and JAL3) significantly attenuated the accumulation of JAs, JA-mediated defensives and the plant"s resistance to M. sexta attack, suggesting roles in regulating JA-mediated plant defense.	jasmonic acid	117-120	jacalin-related lectin 3	Nicotiana attenuata	66-70
33119890-6	2021	The data reveal that MIEL1 and JAZ proteins co-regulate JA-mediated cold stress tolerance through the BBX37-ICE1-CBF module in apple.	jasmonic acid	31-33	transcription factor ICE1-like	Malus domestica	108-112
33659016-1	2021	Allene oxide synthase (AOS) is a key enzyme of the jasmonic acid (JA) signaling pathway.	jasmonic acid	51-64	allene oxide synthase	Arabidopsis thaliana	0-21
33165597-0	2021	AtWRKY75 positively regulates jasmonate-mediated plant defense to necrotrophic fungal pathogens.	jasmonic acid	30-39	WRKY DNA-binding protein 75	Arabidopsis thaliana	0-8
33165597-2	2021	In this study, we demonstrated that AtWRKY75 positively regulates the jasmonate (JA)-mediated plant defense against necrotrophic fungal pathogens Botrytis cinerea and Alternaria brassicicola and also affects plants" sensitivity to JA-inhibited seed germination and root growth.	jasmonic acid	70-79	WRKY DNA-binding protein 75	Arabidopsis thaliana	36-44
33165597-2	2021	In this study, we demonstrated that AtWRKY75 positively regulates the jasmonate (JA)-mediated plant defense against necrotrophic fungal pathogens Botrytis cinerea and Alternaria brassicicola and also affects plants" sensitivity to JA-inhibited seed germination and root growth.	jasmonic acid	81-83	WRKY DNA-binding protein 75	Arabidopsis thaliana	36-44
33165597-2	2021	In this study, we demonstrated that AtWRKY75 positively regulates the jasmonate (JA)-mediated plant defense against necrotrophic fungal pathogens Botrytis cinerea and Alternaria brassicicola and also affects plants" sensitivity to JA-inhibited seed germination and root growth.	jasmonic acid	231-233	WRKY DNA-binding protein 75	Arabidopsis thaliana	36-44
33165597-5	2021	In vivo and in vitro experiments suggested that WRKY75 interacts with several JASMONATE ZIM-domain proteins, which are repressors of the JA signaling pathway.	jasmonic acid	78-80	WRKY DNA-binding protein 75	Arabidopsis thaliana	48-54
33165597-8	2021	Taken together, our study provides evidence that WRKY75 functions as a critical component of the JA-mediated signaling pathway to positively regulate Arabidopsis defense response to necrotrophic pathogens.	jasmonic acid	97-99	WRKY DNA-binding protein 75	Arabidopsis thaliana	49-55
33659016-1	2021	Allene oxide synthase (AOS) is a key enzyme of the jasmonic acid (JA) signaling pathway.	jasmonic acid	51-64	allene oxide synthase	Arabidopsis thaliana	23-26
33659016-1	2021	Allene oxide synthase (AOS) is a key enzyme of the jasmonic acid (JA) signaling pathway.	jasmonic acid	66-68	allene oxide synthase	Arabidopsis thaliana	0-21
33659016-1	2021	Allene oxide synthase (AOS) is a key enzyme of the jasmonic acid (JA) signaling pathway.	jasmonic acid	66-68	allene oxide synthase	Arabidopsis thaliana	23-26
33659715-0	2021	G protein and PLDdelta are involved in JA to regulate osmotic stress responses in Arabidopsis thaliana.	jasmonic acid	39-41	phospholipase D delta	Arabidopsis thaliana	0-22
33659715-3	2021	The results showed that GPA1 involved in the regulation of JA to PLDdelta under osmotic stress.	jasmonic acid	59-61	G protein alpha subunit 1	Arabidopsis thaliana	24-28
33659715-3	2021	The results showed that GPA1 involved in the regulation of JA to PLDdelta under osmotic stress.	jasmonic acid	59-61	phospholipase D delta	Arabidopsis thaliana	65-73
33659715-4	2021	Both GPA1 and PLDdelta participated in the regulation of JA on the seed germination and osmotic tolerance.	jasmonic acid	57-59	G protein alpha subunit 1	Arabidopsis thaliana	5-9
33659715-4	2021	Both GPA1 and PLDdelta participated in the regulation of JA on the seed germination and osmotic tolerance.	jasmonic acid	57-59	phospholipase D delta	Arabidopsis thaliana	14-22
33659715-5	2021	Exogenous MeJA reduced the EL and MDA in WT, but increased the EL and MDA in gpa1-4 and plddelta, indicating that GPA1 and PLDdelta were involved in the protection of JA on the membrane.	jasmonic acid	12-14	G protein alpha subunit 1	Arabidopsis thaliana	77-83
33659715-5	2021	Exogenous MeJA reduced the EL and MDA in WT, but increased the EL and MDA in gpa1-4 and plddelta, indicating that GPA1 and PLDdelta were involved in the protection of JA on the membrane.	jasmonic acid	12-14	phospholipase D delta	Arabidopsis thaliana	88-96
33659715-5	2021	Exogenous MeJA reduced the EL and MDA in WT, but increased the EL and MDA in gpa1-4 and plddelta, indicating that GPA1 and PLDdelta were involved in the protection of JA on the membrane.	jasmonic acid	12-14	G protein alpha subunit 1	Arabidopsis thaliana	114-118
33659715-5	2021	Exogenous MeJA reduced the EL and MDA in WT, but increased the EL and MDA in gpa1-4 and plddelta, indicating that GPA1 and PLDdelta were involved in the protection of JA on the membrane.	jasmonic acid	12-14	phospholipase D delta	Arabidopsis thaliana	123-131
33659715-7	2021	The LOX activity and JA content in plddelta seedings were lower obviously than those in WT, but were markedly increased and were higher than WT after applying phosphatidic acid (PA).	jasmonic acid	21-23	phospholipase D delta	Arabidopsis thaliana	35-43
33659715-8	2021	These results demonstrated that JA responded to osmotic stress by regulating G protein and PLDdelta in A. thaliana.	jasmonic acid	32-34	phospholipase D delta	Arabidopsis thaliana	91-99
33659715-9	2021	PLDdelta was located upstream of 9-LOX and involved in the JA biosynthesis.	jasmonic acid	59-61	phospholipase D delta	Arabidopsis thaliana	0-8
32860735-2	2021	Previous studies using T-DNA insertional mutagenesis demonstrated that disrupting the expression of oxophytodienoic acid reductase 3 (OPR3), which is involved in the jasmonate biosynthesis pathway, results in a kind of male sterility that can be restored to fertility by exogenous jasmonate in Arabidopsis.	jasmonic acid	166-175	oxophytodienoate-reductase 3	Arabidopsis thaliana	100-132
33068437-8	2021	Transcriptomic analysis of ami1 mutants disclosed the reprogramming of a considerable number of stress-related genes, including JA and ABA biosynthesis genes.	jasmonic acid	128-130	amidase 1	Arabidopsis thaliana	27-31
32860735-2	2021	Previous studies using T-DNA insertional mutagenesis demonstrated that disrupting the expression of oxophytodienoic acid reductase 3 (OPR3), which is involved in the jasmonate biosynthesis pathway, results in a kind of male sterility that can be restored to fertility by exogenous jasmonate in Arabidopsis.	jasmonic acid	166-175	oxophytodienoate-reductase 3	Arabidopsis thaliana	134-138
32860735-2	2021	Previous studies using T-DNA insertional mutagenesis demonstrated that disrupting the expression of oxophytodienoic acid reductase 3 (OPR3), which is involved in the jasmonate biosynthesis pathway, results in a kind of male sterility that can be restored to fertility by exogenous jasmonate in Arabidopsis.	jasmonic acid	281-290	oxophytodienoate-reductase 3	Arabidopsis thaliana	100-132
32860735-2	2021	Previous studies using T-DNA insertional mutagenesis demonstrated that disrupting the expression of oxophytodienoic acid reductase 3 (OPR3), which is involved in the jasmonate biosynthesis pathway, results in a kind of male sterility that can be restored to fertility by exogenous jasmonate in Arabidopsis.	jasmonic acid	281-290	oxophytodienoate-reductase 3	Arabidopsis thaliana	134-138
32888338-0	2021	Mediation of JA signaling in glandular trichomes by the woolly/SlMYC1 regulatory module improves pest resistance in tomato.	jasmonic acid	13-15	transcription factor MYC1	Solanum lycopersicum	63-69
32888338-7	2021	The wo/SlMYC1 regulatory module is inhibited by SlJAZ2 through a competitive binding mechanism, resulting in a fine-tuned JA response in tomato trichomes.	jasmonic acid	50-52	transcription factor MYC1	Solanum lycopersicum	7-13
33467172-8	2021	Moreover, JA-deficient opr7-5opr8-2 mutant displayed enhanced resistance to GSR compared to wild type.	jasmonic acid	10-12	12-oxophytodienoate reductase7	Zea mays	23-27
33124043-0	2021	Jasmonates induce Arabidopsis bioactivities selectively inhibiting the growth of breast cancer cells through CDC6 and mTOR.	jasmonic acid	0-10	cell division control 6	Arabidopsis thaliana	109-113
33419940-7	2021	Transcriptome analysis revealed that AHL13 regulates key factors of jasmonic acid biosynthesis and signaling and affects immunity toward Pseudomonas syringae and Botrytis cinerea pathogens.	jasmonic acid	68-81	AT hook motif DNA-binding family protein	Arabidopsis thaliana	37-42
33487333-6	2021	SlMYB14 works downstream of SlMYC2 in the jasmonate signaling pathway.	jasmonic acid	42-51	transcription factor MYC2	Solanum lycopersicum	28-34
33617121-8	2021	These new insights into hormone crosstalk regulation of plant defense are reviewed here, with a focus on crosstalk acting on the jasmonic acid pathway in Arabidopsis thaliana, highlighting the transcription factors MYC2 and ORA59 as major targets for modulation by other hormones.	jasmonic acid	129-142	Basic helix-loop-helix (bHLH) DNA-binding family protein	Arabidopsis thaliana	215-219
33357541-10	2021	By analyzing transcriptome in N. benthamiana and the contents of salicylic acid (SA) and jasmonic acid (JA), GP-1 enhanced viral resistance of tobacco by improving the SA and JA contents, strengthening plant secondary metabolites activities, promoting systemic accumulation of pathogenesis-related proteins in TMV- inoculated tobacco there by producing antiviral activity.	jasmonic acid	89-102	polygalacturonase-1 non-catalytic subunit beta-like	Nicotiana tabacum	109-113
33357541-10	2021	By analyzing transcriptome in N. benthamiana and the contents of salicylic acid (SA) and jasmonic acid (JA), GP-1 enhanced viral resistance of tobacco by improving the SA and JA contents, strengthening plant secondary metabolites activities, promoting systemic accumulation of pathogenesis-related proteins in TMV- inoculated tobacco there by producing antiviral activity.	jasmonic acid	104-106	polygalacturonase-1 non-catalytic subunit beta-like	Nicotiana tabacum	109-113
33111454-7	2021	Also, tem1 tem2 plants showed a delay in salt-induced leaf senescence, possibly as a consequence of down-regulation of Jasmonic Acid (JA) biosynthetic genes.	jasmonic acid	119-132	AP2/B3 transcription factor family protein	Arabidopsis thaliana	6-10
33111454-7	2021	Also, tem1 tem2 plants showed a delay in salt-induced leaf senescence, possibly as a consequence of down-regulation of Jasmonic Acid (JA) biosynthetic genes.	jasmonic acid	119-132	related to ABI3/VP1 2	Arabidopsis thaliana	11-15
33111454-7	2021	Also, tem1 tem2 plants showed a delay in salt-induced leaf senescence, possibly as a consequence of down-regulation of Jasmonic Acid (JA) biosynthetic genes.	jasmonic acid	134-136	AP2/B3 transcription factor family protein	Arabidopsis thaliana	6-10
33111454-7	2021	Also, tem1 tem2 plants showed a delay in salt-induced leaf senescence, possibly as a consequence of down-regulation of Jasmonic Acid (JA) biosynthetic genes.	jasmonic acid	134-136	related to ABI3/VP1 2	Arabidopsis thaliana	11-15
33428670-3	2021	We previously showed that begomoviral betaC1 inhibits MYC2-mediated jasmonate signaling to establish plant-dependent mutualism with its insect vector.	jasmonic acid	68-77	adenylate cyclase 1	Homo sapiens	38-44
33357541-10	2021	By analyzing transcriptome in N. benthamiana and the contents of salicylic acid (SA) and jasmonic acid (JA), GP-1 enhanced viral resistance of tobacco by improving the SA and JA contents, strengthening plant secondary metabolites activities, promoting systemic accumulation of pathogenesis-related proteins in TMV- inoculated tobacco there by producing antiviral activity.	jasmonic acid	175-177	polygalacturonase-1 non-catalytic subunit beta-like	Nicotiana tabacum	109-113
33051890-0	2021	Apple BT2 protein negatively regulates JA-triggered leaf senescence by modulating the stability of MYC2 and JAZ2.	jasmonic acid	39-41	protein TIFY 6B-like	Malus domestica	108-112
33617121-8	2021	These new insights into hormone crosstalk regulation of plant defense are reviewed here, with a focus on crosstalk acting on the jasmonic acid pathway in Arabidopsis thaliana, highlighting the transcription factors MYC2 and ORA59 as major targets for modulation by other hormones.	jasmonic acid	129-142	octadecanoid-responsive AP2/ERF 59	Arabidopsis thaliana	224-229
33371315-6	2020	For example, Radical Induced Cell Death1 depends on ID in transcription factors for its numerous, structurally heterogeneous interactions, and the JAZ:MYC:MED15 regulatory unit depends on protein dynamics, including binding-associated unfolding, for regulation of jasmonate-signaling.	jasmonic acid	264-273	MYC proto-oncogene, bHLH transcription factor	Homo sapiens	151-154
33371315-6	2020	For example, Radical Induced Cell Death1 depends on ID in transcription factors for its numerous, structurally heterogeneous interactions, and the JAZ:MYC:MED15 regulatory unit depends on protein dynamics, including binding-associated unfolding, for regulation of jasmonate-signaling.	jasmonic acid	264-273	mediator complex subunit 15	Homo sapiens	155-160
33007468-9	2020	We obtained strong evidence of suppression of jasmonate (JA) and JA-Ile levels by deconjugation and hydroxylation via IAA-ALA RESISTANT3 (IAR3) and JASMONATE-INDUCED OXYGENASE 2 (JOX2) under the control of JASMONATE INSENSITIVE 1 (MYC2).	jasmonic acid	46-55	peptidase M20/M25/M40 family protein	Arabidopsis thaliana	138-142
33391323-6	2020	Furthermore, the role of AtUSR1 in regulating leaf senescence is related to MYC2-mediuated jasmonic acid (JA) signaling pathway.	jasmonic acid	91-104	Basic helix-loop-helix (bHLH) DNA-binding family protein	Arabidopsis thaliana	76-80
33391323-6	2020	Furthermore, the role of AtUSR1 in regulating leaf senescence is related to MYC2-mediuated jasmonic acid (JA) signaling pathway.	jasmonic acid	106-108	Basic helix-loop-helix (bHLH) DNA-binding family protein	Arabidopsis thaliana	76-80
33287718-9	2020	CONCLUSION: This study reveals that exposure of juvenile Arabidopsis plants to a short repetitive period of MS can alter gene expression and prime plant resistance upon subsequent challenge with necrotrophic pathogens via the JA-mediated COI1 signalling pathway.	jasmonic acid	226-228	RNI-like superfamily protein	Arabidopsis thaliana	238-242
33287718-7	2020	The loss-of-function in JA signalling mediated by the JA-insensitive coronatine-insensitive 1 (coi1) mutant impaired the hyper-induction of defense gene expression and promoted pathogen proliferation in MS-treated plants subject to infection.	jasmonic acid	24-26	RNI-like superfamily protein	Arabidopsis thaliana	95-99
33287718-7	2020	The loss-of-function in JA signalling mediated by the JA-insensitive coronatine-insensitive 1 (coi1) mutant impaired the hyper-induction of defense gene expression and promoted pathogen proliferation in MS-treated plants subject to infection.	jasmonic acid	54-56	RNI-like superfamily protein	Arabidopsis thaliana	95-99
33007468-9	2020	We obtained strong evidence of suppression of jasmonate (JA) and JA-Ile levels by deconjugation and hydroxylation via IAA-ALA RESISTANT3 (IAR3) and JASMONATE-INDUCED OXYGENASE 2 (JOX2) under the control of JASMONATE INSENSITIVE 1 (MYC2).	jasmonic acid	46-55	Basic helix-loop-helix (bHLH) DNA-binding family protein	Arabidopsis thaliana	206-229
33007468-9	2020	We obtained strong evidence of suppression of jasmonate (JA) and JA-Ile levels by deconjugation and hydroxylation via IAA-ALA RESISTANT3 (IAR3) and JASMONATE-INDUCED OXYGENASE 2 (JOX2) under the control of JASMONATE INSENSITIVE 1 (MYC2).	jasmonic acid	46-55	Basic helix-loop-helix (bHLH) DNA-binding family protein	Arabidopsis thaliana	231-235
33007468-9	2020	We obtained strong evidence of suppression of jasmonate (JA) and JA-Ile levels by deconjugation and hydroxylation via IAA-ALA RESISTANT3 (IAR3) and JASMONATE-INDUCED OXYGENASE 2 (JOX2) under the control of JASMONATE INSENSITIVE 1 (MYC2).	jasmonic acid	57-59	Basic helix-loop-helix (bHLH) DNA-binding family protein	Arabidopsis thaliana	206-229
33276577-4	2020	Quantitative polymerase chain reaction (qPCR) experiments revealed that the expression of ARABIDOPSIS NUCLEOREDOXIN 1 (AtNRX1) is specifically induced by the application of jasmonic acid (JA) and upon inoculation with a necrotrophic fungal pathogen, Alternaria brassicicola.	jasmonic acid	173-186	DC1 domain-containing protein	Arabidopsis thaliana	119-125
33007468-9	2020	We obtained strong evidence of suppression of jasmonate (JA) and JA-Ile levels by deconjugation and hydroxylation via IAA-ALA RESISTANT3 (IAR3) and JASMONATE-INDUCED OXYGENASE 2 (JOX2) under the control of JASMONATE INSENSITIVE 1 (MYC2).	jasmonic acid	57-59	Basic helix-loop-helix (bHLH) DNA-binding family protein	Arabidopsis thaliana	231-235
33276577-4	2020	Quantitative polymerase chain reaction (qPCR) experiments revealed that the expression of ARABIDOPSIS NUCLEOREDOXIN 1 (AtNRX1) is specifically induced by the application of jasmonic acid (JA) and upon inoculation with a necrotrophic fungal pathogen, Alternaria brassicicola.	jasmonic acid	188-190	DC1 domain-containing protein	Arabidopsis thaliana	119-125
33029918-5	2020	Our genetic evidence demonstrates that AtPME17 strongly contributes to the pathogen-induced PME activity and resistance against B. cinerea by triggering jasmonic acid-ethylene-dependent PDF1.2 expression.	jasmonic acid	153-166	Plant invertase/pectin methylesterase inhibitor superfamily	Arabidopsis thaliana	39-46
32910959-5	2020	In SA (NahG, sid2) and JA (jar1) deficient mutants, disease severity indicated that both SA and JA pathways are necessary for Arabidopsis response to Pst DC3000.	jasmonic acid	23-25	Auxin-responsive GH3 family protein	Arabidopsis thaliana	27-31
32910959-5	2020	In SA (NahG, sid2) and JA (jar1) deficient mutants, disease severity indicated that both SA and JA pathways are necessary for Arabidopsis response to Pst DC3000.	jasmonic acid	96-98	Auxin-responsive GH3 family protein	Arabidopsis thaliana	27-31
32969146-0	2020	Rice stripe virus coat protein induces the accumulation of jasmonic acid, activating plant defence against the virus while also attracting its vector to feed.	jasmonic acid	59-72	golgi phosphoprotein 3	Homo sapiens	18-30
32969146-6	2020	The coat protein (CP) was the major viral component responsible for inducing the JA pathway.	jasmonic acid	81-83	golgi phosphoprotein 3	Homo sapiens	4-16
32969146-6	2020	The coat protein (CP) was the major viral component responsible for inducing the JA pathway.	jasmonic acid	81-83	golgi phosphoprotein 3	Homo sapiens	18-20
32969146-9	2020	Our results demonstrate that CP is an inducer of the JA pathway that activates plant defence against RSV while also attracting SBPHs to feed and benefitting viral transmission.	jasmonic acid	53-55	golgi phosphoprotein 3	Homo sapiens	29-31
32996255-1	2020	Allene oxide synthase (AOS) and hydroperoxide lyase (HPL) are two important members of P450 enzymes metabolizing hydroperoxy fatty acid to produce jasmonates and aldehydes respectively, which function in response to diverse environmental and developmental stimuli.	jasmonic acid	147-157	allene oxide synthase	Glycine max	0-21
32996255-1	2020	Allene oxide synthase (AOS) and hydroperoxide lyase (HPL) are two important members of P450 enzymes metabolizing hydroperoxy fatty acid to produce jasmonates and aldehydes respectively, which function in response to diverse environmental and developmental stimuli.	jasmonic acid	147-157	9-divinyl ether synthase-like	Glycine max	32-51
32996255-1	2020	Allene oxide synthase (AOS) and hydroperoxide lyase (HPL) are two important members of P450 enzymes metabolizing hydroperoxy fatty acid to produce jasmonates and aldehydes respectively, which function in response to diverse environmental and developmental stimuli.	jasmonic acid	147-157	9-divinyl ether synthase-like	Glycine max	53-56
33023956-6	2020	Further genetic analyses showed that JA activates ABA signaling and requires functional ABI3 and ABI5.	jasmonic acid	37-39	AP2/B3-like transcriptional factor family protein	Arabidopsis thaliana	88-92
33023956-6	2020	Further genetic analyses showed that JA activates ABA signaling and requires functional ABI3 and ABI5.	jasmonic acid	37-39	Basic-leucine zipper (bZIP) transcription factor family protein	Arabidopsis thaliana	97-101
33023956-8	2020	Together, our results reveal a previously uncharacterized signaling module in which JAZ repressors of the JA pathway regulate the ABA-responsive ABI3 and ABI5 transcription factors to integrate JA and ABA signals during seed germination and post-germinative growth.	jasmonic acid	84-86	AP2/B3-like transcriptional factor family protein	Arabidopsis thaliana	145-149
33023956-8	2020	Together, our results reveal a previously uncharacterized signaling module in which JAZ repressors of the JA pathway regulate the ABA-responsive ABI3 and ABI5 transcription factors to integrate JA and ABA signals during seed germination and post-germinative growth.	jasmonic acid	84-86	Basic-leucine zipper (bZIP) transcription factor family protein	Arabidopsis thaliana	154-158
33023956-8	2020	Together, our results reveal a previously uncharacterized signaling module in which JAZ repressors of the JA pathway regulate the ABA-responsive ABI3 and ABI5 transcription factors to integrate JA and ABA signals during seed germination and post-germinative growth.	jasmonic acid	106-108	AP2/B3-like transcriptional factor family protein	Arabidopsis thaliana	145-149
33023956-8	2020	Together, our results reveal a previously uncharacterized signaling module in which JAZ repressors of the JA pathway regulate the ABA-responsive ABI3 and ABI5 transcription factors to integrate JA and ABA signals during seed germination and post-germinative growth.	jasmonic acid	106-108	Basic-leucine zipper (bZIP) transcription factor family protein	Arabidopsis thaliana	154-158
33043777-3	2020	In this report, we show that the tet8 mutant was attenuated in the plant hormone jasmonate (JA) accumulation in response to mechanical wounding treatment.	jasmonic acid	81-90	tetraspanin8	Arabidopsis thaliana	33-37
33043777-3	2020	In this report, we show that the tet8 mutant was attenuated in the plant hormone jasmonate (JA) accumulation in response to mechanical wounding treatment.	jasmonic acid	92-94	tetraspanin8	Arabidopsis thaliana	33-37
33218621-5	2020	As the translational RUS4-GFP fusion protein has been localized to the chloroplasts where the first step of jasmonic acid (JA) biosynthesis takes place, leading to the hypothesis that RUS4 may be involved in JA-mediated stamen development.	jasmonic acid	108-121	root UVB sensitive protein (Protein of unknown function, DUF647)	Arabidopsis thaliana	21-25
33218621-5	2020	As the translational RUS4-GFP fusion protein has been localized to the chloroplasts where the first step of jasmonic acid (JA) biosynthesis takes place, leading to the hypothesis that RUS4 may be involved in JA-mediated stamen development.	jasmonic acid	108-121	root UVB sensitive protein (Protein of unknown function, DUF647)	Arabidopsis thaliana	184-188
33218621-5	2020	As the translational RUS4-GFP fusion protein has been localized to the chloroplasts where the first step of jasmonic acid (JA) biosynthesis takes place, leading to the hypothesis that RUS4 may be involved in JA-mediated stamen development.	jasmonic acid	123-125	root UVB sensitive protein (Protein of unknown function, DUF647)	Arabidopsis thaliana	21-25
33218621-5	2020	As the translational RUS4-GFP fusion protein has been localized to the chloroplasts where the first step of jasmonic acid (JA) biosynthesis takes place, leading to the hypothesis that RUS4 may be involved in JA-mediated stamen development.	jasmonic acid	123-125	root UVB sensitive protein (Protein of unknown function, DUF647)	Arabidopsis thaliana	184-188
33218621-5	2020	As the translational RUS4-GFP fusion protein has been localized to the chloroplasts where the first step of jasmonic acid (JA) biosynthesis takes place, leading to the hypothesis that RUS4 may be involved in JA-mediated stamen development.	jasmonic acid	208-210	root UVB sensitive protein (Protein of unknown function, DUF647)	Arabidopsis thaliana	21-25
33218621-5	2020	As the translational RUS4-GFP fusion protein has been localized to the chloroplasts where the first step of jasmonic acid (JA) biosynthesis takes place, leading to the hypothesis that RUS4 may be involved in JA-mediated stamen development.	jasmonic acid	208-210	root UVB sensitive protein (Protein of unknown function, DUF647)	Arabidopsis thaliana	184-188
33218621-8	2020	Our data suggest that RUS4 may play a role in coordinating anther dehiscence and pollen maturation by affecting the expression of JA-related genes.	jasmonic acid	130-132	root UVB sensitive protein (Protein of unknown function, DUF647)	Arabidopsis thaliana	22-26
33255510-1	2020	DEFECTIVE IN ANTHER DEHISCENCE 1 (DAD1), a phospholipase A1, utilizes galactolipids (18:3) to generate alpha-linolenic acid (ALA) in the initial step of jasmonic acid (JA) biosynthesis in Arabidopsis thaliana.	jasmonic acid	153-166	alpha/beta-Hydrolases superfamily protein	Arabidopsis thaliana	0-32
33255510-1	2020	DEFECTIVE IN ANTHER DEHISCENCE 1 (DAD1), a phospholipase A1, utilizes galactolipids (18:3) to generate alpha-linolenic acid (ALA) in the initial step of jasmonic acid (JA) biosynthesis in Arabidopsis thaliana.	jasmonic acid	153-166	alpha/beta-Hydrolases superfamily protein	Arabidopsis thaliana	34-38
33255510-1	2020	DEFECTIVE IN ANTHER DEHISCENCE 1 (DAD1), a phospholipase A1, utilizes galactolipids (18:3) to generate alpha-linolenic acid (ALA) in the initial step of jasmonic acid (JA) biosynthesis in Arabidopsis thaliana.	jasmonic acid	168-170	alpha/beta-Hydrolases superfamily protein	Arabidopsis thaliana	0-32
33255510-1	2020	DEFECTIVE IN ANTHER DEHISCENCE 1 (DAD1), a phospholipase A1, utilizes galactolipids (18:3) to generate alpha-linolenic acid (ALA) in the initial step of jasmonic acid (JA) biosynthesis in Arabidopsis thaliana.	jasmonic acid	168-170	alpha/beta-Hydrolases superfamily protein	Arabidopsis thaliana	34-38
33255380-0	2020	Induction of Jasmonoyl-Isoleucine (JA-Ile)-Dependent JASMONATE ZIM-DOMAIN (JAZ) Genes in NaCl-Treated Arabidopsis thaliana Roots Can Occur at Very Low JA-Ile Levels and in the Absence of the JA/JA-Ile Transporter JAT1/AtABCG16.	jasmonic acid	53-62	ABC-2 type transporter family protein	Arabidopsis thaliana	218-226
33141846-0	2020	Retraction: Identification of a Novel Jasmonate-Responsive Element in the AtJMT Promoter and Its Binding Protein for AtJMT Repression.	jasmonic acid	38-47	jasmonic acid carboxyl methyltransferase	Arabidopsis thaliana	74-79
33141846-0	2020	Retraction: Identification of a Novel Jasmonate-Responsive Element in the AtJMT Promoter and Its Binding Protein for AtJMT Repression.	jasmonic acid	38-47	jasmonic acid carboxyl methyltransferase	Arabidopsis thaliana	117-122
32585752-3	2020	Mutations in DGD1, the major DGDG synthesizing enzyme, severely reduce DGDG content and induce jasmonic acid (JA) overproduction, resulting in stunted growth.	jasmonic acid	95-108	UDP-Glycosyltransferase superfamily protein	Arabidopsis thaliana	13-17
32585752-3	2020	Mutations in DGD1, the major DGDG synthesizing enzyme, severely reduce DGDG content and induce jasmonic acid (JA) overproduction, resulting in stunted growth.	jasmonic acid	110-112	UDP-Glycosyltransferase superfamily protein	Arabidopsis thaliana	13-17
32585752-7	2020	Expression of JA-biosynthesis and -responsive genes were reduced in amiR-MGD1-transformed dgd1 plants.	jasmonic acid	14-16	UDP-Glycosyltransferase superfamily protein	Arabidopsis thaliana	90-94
33180717-8	2020	Collectively, this study indicated that CsWRKY10 negatively regulates the resistance of cucumber to B. cinerea by reducing the ROS contents and inhibiting the JA-mediated resistance signalling pathway, but strengthens resistance to Corynespora cassiicola.	jasmonic acid	159-161	probable WRKY transcription factor 21	Cucumis sativus	40-48
33142885-4	2020	In addition, Flg22 and chitin upregulated the expression of salicylic acid-related genes, ICS1 and EDS1, whereas AtPep1 upregulated the expression of jasmonic acid-related genes, JAZ1 and PDF1.2, in addition to ICS1 and EDS1.	jasmonic acid	150-163	precursor of peptide 1	Arabidopsis thaliana	113-119
33060707-0	2020	CmLOX10 positively regulates drought tolerance through jasmonic acid -mediated stomatal closure in oriental melon (Cucumis melo var.	jasmonic acid	55-68	linoleate 13S-lipoxygenase 2-1, chloroplastic-like	Cucumis melo	0-7
33060707-6	2020	Moreover, the transcription of jasmonic acid (JA)-related genes and JA accumulation were significantly induced in CmLOX10-overexpressed Arabidopsis, which were reversely suppressed in CmLOX10-silenced seedlings during the stage of drought stress.	jasmonic acid	31-44	linoleate 13S-lipoxygenase 2-1, chloroplastic-like	Cucumis melo	114-121
33060707-6	2020	Moreover, the transcription of jasmonic acid (JA)-related genes and JA accumulation were significantly induced in CmLOX10-overexpressed Arabidopsis, which were reversely suppressed in CmLOX10-silenced seedlings during the stage of drought stress.	jasmonic acid	31-44	linoleate 13S-lipoxygenase 2-1, chloroplastic-like	Cucumis melo	184-191
33060707-6	2020	Moreover, the transcription of jasmonic acid (JA)-related genes and JA accumulation were significantly induced in CmLOX10-overexpressed Arabidopsis, which were reversely suppressed in CmLOX10-silenced seedlings during the stage of drought stress.	jasmonic acid	46-48	linoleate 13S-lipoxygenase 2-1, chloroplastic-like	Cucumis melo	114-121
33060707-6	2020	Moreover, the transcription of jasmonic acid (JA)-related genes and JA accumulation were significantly induced in CmLOX10-overexpressed Arabidopsis, which were reversely suppressed in CmLOX10-silenced seedlings during the stage of drought stress.	jasmonic acid	46-48	linoleate 13S-lipoxygenase 2-1, chloroplastic-like	Cucumis melo	184-191
33060707-6	2020	Moreover, the transcription of jasmonic acid (JA)-related genes and JA accumulation were significantly induced in CmLOX10-overexpressed Arabidopsis, which were reversely suppressed in CmLOX10-silenced seedlings during the stage of drought stress.	jasmonic acid	68-70	linoleate 13S-lipoxygenase 2-1, chloroplastic-like	Cucumis melo	114-121
33060707-8	2020	In addition, the feedback regulation of CmLOX10 was induced by JA signaling, and the expression level of CmMYC2 was increased by JA and drought treatment.	jasmonic acid	63-65	linoleate 13S-lipoxygenase 2-1, chloroplastic-like	Cucumis melo	40-47
33060707-10	2020	In summary, we identified the important roles of CmLOX10 in the regulation of drought tolerance in oriental melon seedlings through JA- mediated stomatal closure and JA signaling-mediated feedback through CmMYC2.	jasmonic acid	132-134	linoleate 13S-lipoxygenase 2-1, chloroplastic-like	Cucumis melo	49-56
33060707-10	2020	In summary, we identified the important roles of CmLOX10 in the regulation of drought tolerance in oriental melon seedlings through JA- mediated stomatal closure and JA signaling-mediated feedback through CmMYC2.	jasmonic acid	166-168	linoleate 13S-lipoxygenase 2-1, chloroplastic-like	Cucumis melo	49-56
32738736-3	2020	JA signaling induces cell proliferation and restores root meristem by ectopically inducing an AP2/ERF transcription factor ETHYLENE RESPONSE FACTOR 115 (ERF115) which in normal development, replenishes quiescent center cells.	jasmonic acid	0-2	transcription factor AP-2 alpha	Homo sapiens	94-97
32738736-3	2020	JA signaling induces cell proliferation and restores root meristem by ectopically inducing an AP2/ERF transcription factor ETHYLENE RESPONSE FACTOR 115 (ERF115) which in normal development, replenishes quiescent center cells.	jasmonic acid	0-2	ETS2 repressor factor	Homo sapiens	98-101
32777679-0	2020	Mediator subunit MED25: at the nexus of jasmonate signaling.	jasmonic acid	40-49	mediator complex subunit 25	Homo sapiens	17-22
32669418-0	2020	Jasmonate precursor biosynthetic enzymes LOX3 and LOX4 control wound-response growth restriction.	jasmonic acid	0-9	lipoxygenase 3	Arabidopsis thaliana	41-45
32669418-0	2020	Jasmonate precursor biosynthetic enzymes LOX3 and LOX4 control wound-response growth restriction.	jasmonic acid	0-9	PLAT/LH2 domain-containing lipoxygenase family protein	Arabidopsis thaliana	50-54
32669418-4	2020	Additional genetic studies were carried out in the gain-of-function fatty acid oxygenation 2 (fou2) mutant that, even when undamaged, shows JA-dependent leaf growth restriction.	jasmonic acid	140-142	two-pore channel 1	Arabidopsis thaliana	94-98
32669418-5	2020	The fou2 lox3 lox4 triple mutant suppressed the fou2 JA-dependent growth phenotype, confirming that LOX3 and LOX4 function in leaf growth restriction.	jasmonic acid	53-55	two-pore channel 1	Arabidopsis thaliana	4-8
32669418-5	2020	The fou2 lox3 lox4 triple mutant suppressed the fou2 JA-dependent growth phenotype, confirming that LOX3 and LOX4 function in leaf growth restriction.	jasmonic acid	53-55	lipoxygenase 3	Arabidopsis thaliana	9-13
32669418-5	2020	The fou2 lox3 lox4 triple mutant suppressed the fou2 JA-dependent growth phenotype, confirming that LOX3 and LOX4 function in leaf growth restriction.	jasmonic acid	53-55	PLAT/LH2 domain-containing lipoxygenase family protein	Arabidopsis thaliana	14-18
32669418-5	2020	The fou2 lox3 lox4 triple mutant suppressed the fou2 JA-dependent growth phenotype, confirming that LOX3 and LOX4 function in leaf growth restriction.	jasmonic acid	53-55	two-pore channel 1	Arabidopsis thaliana	48-52
32669418-5	2020	The fou2 lox3 lox4 triple mutant suppressed the fou2 JA-dependent growth phenotype, confirming that LOX3 and LOX4 function in leaf growth restriction.	jasmonic acid	53-55	lipoxygenase 3	Arabidopsis thaliana	100-104
32669418-5	2020	The fou2 lox3 lox4 triple mutant suppressed the fou2 JA-dependent growth phenotype, confirming that LOX3 and LOX4 function in leaf growth restriction.	jasmonic acid	53-55	PLAT/LH2 domain-containing lipoxygenase family protein	Arabidopsis thaliana	109-113
32669418-8	2020	To activate LOX3-dependent JA production in unwounded plants, we employed hyperactive TPC1 variants.	jasmonic acid	27-29	lipoxygenase 3	Arabidopsis thaliana	12-16
32669418-8	2020	To activate LOX3-dependent JA production in unwounded plants, we employed hyperactive TPC1 variants.	jasmonic acid	27-29	two-pore channel 1	Arabidopsis thaliana	86-90
32732351-6	2020	In sun1, jasmonate signaling and expression of downstream chemical defense genes, including VEGETATIVE STORAGE PROTEIN 1 (VSP1) and BRANCHED-CHAIN AMINOTRANSFERASE4 (BCAT4), are increased but, unexpectedly sun1 is more susceptible to insect feeding.	jasmonic acid	9-18	vegetative storage protein 1	Arabidopsis thaliana	92-120
32732351-6	2020	In sun1, jasmonate signaling and expression of downstream chemical defense genes, including VEGETATIVE STORAGE PROTEIN 1 (VSP1) and BRANCHED-CHAIN AMINOTRANSFERASE4 (BCAT4), are increased but, unexpectedly sun1 is more susceptible to insect feeding.	jasmonic acid	9-18	vegetative storage protein 1	Arabidopsis thaliana	122-126
32732351-6	2020	In sun1, jasmonate signaling and expression of downstream chemical defense genes, including VEGETATIVE STORAGE PROTEIN 1 (VSP1) and BRANCHED-CHAIN AMINOTRANSFERASE4 (BCAT4), are increased but, unexpectedly sun1 is more susceptible to insect feeding.	jasmonic acid	9-18	branched-chain aminotransferase4	Arabidopsis thaliana	166-171
32732351-7	2020	The central transcription factor in jasmonate signaling, MYC2, binds to and induces AtTBL37 expression.	jasmonic acid	36-45	Basic helix-loop-helix (bHLH) DNA-binding family protein	Arabidopsis thaliana	57-61
32732351-7	2020	The central transcription factor in jasmonate signaling, MYC2, binds to and induces AtTBL37 expression.	jasmonic acid	36-45	TRICHOME BIREFRINGENCE-LIKE 37	Arabidopsis thaliana	84-91
32900442-0	2020	Jasmonic acid promotes leaf senescence through MYC2-mediated repression of CATALASE2 expression in Arabidopsis.	jasmonic acid	0-13	Basic helix-loop-helix (bHLH) DNA-binding family protein	Arabidopsis thaliana	47-51
32900442-0	2020	Jasmonic acid promotes leaf senescence through MYC2-mediated repression of CATALASE2 expression in Arabidopsis.	jasmonic acid	0-13	catalase 2	Arabidopsis thaliana	75-84
32900442-4	2020	The mutant myc2 with a mutation of MYC2, a master transcription factor in JA signalling pathway, exhibits delayed leaf senescence with increased catalase activity and decreased H2O2 accumulation compared with the wild type upon JA treatment.	jasmonic acid	74-76	Basic helix-loop-helix (bHLH) DNA-binding family protein	Arabidopsis thaliana	11-15
32900442-4	2020	The mutant myc2 with a mutation of MYC2, a master transcription factor in JA signalling pathway, exhibits delayed leaf senescence with increased catalase activity and decreased H2O2 accumulation compared with the wild type upon JA treatment.	jasmonic acid	74-76	Basic helix-loop-helix (bHLH) DNA-binding family protein	Arabidopsis thaliana	35-39
32900442-4	2020	The mutant myc2 with a mutation of MYC2, a master transcription factor in JA signalling pathway, exhibits delayed leaf senescence with increased catalase activity and decreased H2O2 accumulation compared with the wild type upon JA treatment.	jasmonic acid	228-230	Basic helix-loop-helix (bHLH) DNA-binding family protein	Arabidopsis thaliana	11-15
32900442-4	2020	The mutant myc2 with a mutation of MYC2, a master transcription factor in JA signalling pathway, exhibits delayed leaf senescence with increased catalase activity and decreased H2O2 accumulation compared with the wild type upon JA treatment.	jasmonic acid	228-230	Basic helix-loop-helix (bHLH) DNA-binding family protein	Arabidopsis thaliana	35-39
32900442-5	2020	Further study showed that MYC2 downregulates CATALASE 2 (CAT2) expression by binding to its promoter, thus promoting JA-induced H2O2 accumulation and leaf senescence.	jasmonic acid	117-119	Basic helix-loop-helix (bHLH) DNA-binding family protein	Arabidopsis thaliana	26-30
32900442-5	2020	Further study showed that MYC2 downregulates CATALASE 2 (CAT2) expression by binding to its promoter, thus promoting JA-induced H2O2 accumulation and leaf senescence.	jasmonic acid	117-119	catalase 2	Arabidopsis thaliana	45-55
32900442-5	2020	Further study showed that MYC2 downregulates CATALASE 2 (CAT2) expression by binding to its promoter, thus promoting JA-induced H2O2 accumulation and leaf senescence.	jasmonic acid	117-119	catalase 2	Arabidopsis thaliana	57-61
32900442-7	2020	Thus, our study reveals that JA represses CAT2 expression to increase H2O2 accumulation, thus promoting leaf senescence in a MYC2 dependent manner in Arabidopsis.	jasmonic acid	29-31	catalase 2	Arabidopsis thaliana	42-46
32900442-7	2020	Thus, our study reveals that JA represses CAT2 expression to increase H2O2 accumulation, thus promoting leaf senescence in a MYC2 dependent manner in Arabidopsis.	jasmonic acid	29-31	Basic helix-loop-helix (bHLH) DNA-binding family protein	Arabidopsis thaliana	125-129
32940767-5	2020	Hence, investigating the role of AC4 in pathogenesis divulged that ToLCNDV-AC4 interacted with host TAR1 (tryptophan amino transferase 1)-like protein, CYP450 monooxygenase-the key enzyme of indole acetic acid (IAA) biosynthesis pathway-and with a protein encoded by senescence-associated gene involved in jasmonic acid pathway.	jasmonic acid	306-319	adenylate cyclase 4	Homo sapiens	75-78
32887516-6	2020	AIM1 is a 3-hydroxyacyl-CoA dehydrogenase involved in fatty acid beta-oxidation that contributes to jasmonic acid (JA) and salicylic acid (SA) biosynthesis.	jasmonic acid	100-113	Enoyl-CoA hydratase/isomerase family	Arabidopsis thaliana	0-4
32634250-5	2020	We also demonstrate that ERF115 is transcriptionally activated by jasmonate (JA), an oxylipin-derived phytohormone, which represses ARI in NINJA-dependent and independent manners.	jasmonic acid	66-75	Integrase-type DNA-binding superfamily protein	Arabidopsis thaliana	25-31
32634250-5	2020	We also demonstrate that ERF115 is transcriptionally activated by jasmonate (JA), an oxylipin-derived phytohormone, which represses ARI in NINJA-dependent and independent manners.	jasmonic acid	77-79	Integrase-type DNA-binding superfamily protein	Arabidopsis thaliana	25-31
32706429-6	2020	By interacting with another nuclear protein TYROSYL-DNA PHOSPHODIESTERASE1 (TDP1), AN imposes transcriptional repression on MYB46, encoding a transcriptional activator of PHENYLALANINE AMMONIA-LYASE (PAL) genes which are required for SA biosynthesis, while releasing the TDP1-imposed transcriptional repression on WRKY33, a master regulator of the JA/ET signaling pathway.	jasmonic acid	348-350	tyrosyl-DNA phosphodiesterase-like protein	Arabidopsis thaliana	44-74
32706429-6	2020	By interacting with another nuclear protein TYROSYL-DNA PHOSPHODIESTERASE1 (TDP1), AN imposes transcriptional repression on MYB46, encoding a transcriptional activator of PHENYLALANINE AMMONIA-LYASE (PAL) genes which are required for SA biosynthesis, while releasing the TDP1-imposed transcriptional repression on WRKY33, a master regulator of the JA/ET signaling pathway.	jasmonic acid	348-350	tyrosyl-DNA phosphodiesterase-like protein	Arabidopsis thaliana	76-80
32706429-6	2020	By interacting with another nuclear protein TYROSYL-DNA PHOSPHODIESTERASE1 (TDP1), AN imposes transcriptional repression on MYB46, encoding a transcriptional activator of PHENYLALANINE AMMONIA-LYASE (PAL) genes which are required for SA biosynthesis, while releasing the TDP1-imposed transcriptional repression on WRKY33, a master regulator of the JA/ET signaling pathway.	jasmonic acid	348-350	myb domain protein 46	Arabidopsis thaliana	124-129
32706429-6	2020	By interacting with another nuclear protein TYROSYL-DNA PHOSPHODIESTERASE1 (TDP1), AN imposes transcriptional repression on MYB46, encoding a transcriptional activator of PHENYLALANINE AMMONIA-LYASE (PAL) genes which are required for SA biosynthesis, while releasing the TDP1-imposed transcriptional repression on WRKY33, a master regulator of the JA/ET signaling pathway.	jasmonic acid	348-350	tyrosyl-DNA phosphodiesterase-like protein	Arabidopsis thaliana	271-275
32706429-6	2020	By interacting with another nuclear protein TYROSYL-DNA PHOSPHODIESTERASE1 (TDP1), AN imposes transcriptional repression on MYB46, encoding a transcriptional activator of PHENYLALANINE AMMONIA-LYASE (PAL) genes which are required for SA biosynthesis, while releasing the TDP1-imposed transcriptional repression on WRKY33, a master regulator of the JA/ET signaling pathway.	jasmonic acid	348-350	WRKY DNA-binding protein 33	Arabidopsis thaliana	314-320
32706429-7	2020	These findings demonstrate that the transcriptional co-regulation of MYB46 and WRKY33 by AN mediates the coordination of SA and JA/ET pathways to optimize defenses against (hemi)biotrophic and necrotrophic pathogens.	jasmonic acid	128-130	myb domain protein 46	Arabidopsis thaliana	69-74
32706429-7	2020	These findings demonstrate that the transcriptional co-regulation of MYB46 and WRKY33 by AN mediates the coordination of SA and JA/ET pathways to optimize defenses against (hemi)biotrophic and necrotrophic pathogens.	jasmonic acid	128-130	WRKY DNA-binding protein 33	Arabidopsis thaliana	79-85
32973859-7	2020	NtSKP1 could activate the transcription of genes in jasmonic acid (JA) pathways by impairing the stabilization of JAZ1 protein.	jasmonic acid	52-65	SKP1-like protein 1A	Nicotiana tabacum	0-6
32973859-7	2020	NtSKP1 could activate the transcription of genes in jasmonic acid (JA) pathways by impairing the stabilization of JAZ1 protein.	jasmonic acid	67-69	SKP1-like protein 1A	Nicotiana tabacum	0-6
32887516-6	2020	AIM1 is a 3-hydroxyacyl-CoA dehydrogenase involved in fatty acid beta-oxidation that contributes to jasmonic acid (JA) and salicylic acid (SA) biosynthesis.	jasmonic acid	115-117	Enoyl-CoA hydratase/isomerase family	Arabidopsis thaliana	0-4
32875268-6	2020	Protein interaction networks identified two genes, SKIP and ALY4 whose products have both DNA- and RNA-binding affinities, as potential key regulators mediating jasmonate signaling and AS regulation.	jasmonic acid	161-170	ALWAYS EARLY 4	Arabidopsis thaliana	60-64
32756392-6	2020	Furthermore, the exogenous application of either of three plant hormones-salicylic acid, jasmonic acid, or abscisic acid-enhanced the cuticle formation in atmin7 mutant leaves and the related defense responses to the bacterial Pto infection.	jasmonic acid	89-102	HOPM interactor 7	Arabidopsis thaliana	155-161
32973821-4	2020	The increase in the concentration of JA leads to the decoupling of the JAZ repressor proteins and the bHLH transcription factor MYC3 causing the induction of genes of interest.	jasmonic acid	37-39	zinc finger protein 346	Homo sapiens	71-74
32792583-4	2020	These results demonstrated that cell death resulted from loss of FAH in Arabidopsis is related to JA but not SA, and suggested that JA signaling positively regulates sscd1 cell death by up-regulating Tyr degradation.	jasmonic acid	132-134	fumarylacetoacetase	Arabidopsis thaliana	166-171
31876387-6	2020	MYC2 also controls the transcription of JAV1 and JAM1, which are key factors controlling JA biosynthesis and catabolism, respectively.	jasmonic acid	40-42	Basic helix-loop-helix (bHLH) DNA-binding family protein	Arabidopsis thaliana	0-4
31876387-3	2020	The induced JA is converted to JA-Ile and perceived by the COI1-JAZ co-receptor, leading to activation of the transcription factors (TFs) MYC2 and its homologs, which further induce JA-responsive genes.	jasmonic acid	12-14	RNI-like superfamily protein	Arabidopsis thaliana	59-63
31876387-8	2020	This work illustrates the central role of MYC2/3/4 in controlling wounding-induced JA accumulation by regulating the transcription of genes involved in JA biosynthesis and catabolism.	jasmonic acid	83-85	Basic helix-loop-helix (bHLH) DNA-binding family protein	Arabidopsis thaliana	42-50
31876387-3	2020	The induced JA is converted to JA-Ile and perceived by the COI1-JAZ co-receptor, leading to activation of the transcription factors (TFs) MYC2 and its homologs, which further induce JA-responsive genes.	jasmonic acid	12-14	Basic helix-loop-helix (bHLH) DNA-binding family protein	Arabidopsis thaliana	138-142
31876387-3	2020	The induced JA is converted to JA-Ile and perceived by the COI1-JAZ co-receptor, leading to activation of the transcription factors (TFs) MYC2 and its homologs, which further induce JA-responsive genes.	jasmonic acid	31-33	RNI-like superfamily protein	Arabidopsis thaliana	59-63
31876387-8	2020	This work illustrates the central role of MYC2/3/4 in controlling wounding-induced JA accumulation by regulating the transcription of genes involved in JA biosynthesis and catabolism.	jasmonic acid	152-154	Basic helix-loop-helix (bHLH) DNA-binding family protein	Arabidopsis thaliana	42-50
31876387-3	2020	The induced JA is converted to JA-Ile and perceived by the COI1-JAZ co-receptor, leading to activation of the transcription factors (TFs) MYC2 and its homologs, which further induce JA-responsive genes.	jasmonic acid	31-33	Basic helix-loop-helix (bHLH) DNA-binding family protein	Arabidopsis thaliana	138-142
32563451-3	2020	The Arabidopsis Glucosinolate transporter1 (GTR1/NPF2.10) is characterized as a JA-Ile, a bioactive form of JA, transporter.	jasmonic acid	80-82	Major facilitator superfamily protein	Arabidopsis thaliana	44-48
31876387-3	2020	The induced JA is converted to JA-Ile and perceived by the COI1-JAZ co-receptor, leading to activation of the transcription factors (TFs) MYC2 and its homologs, which further induce JA-responsive genes.	jasmonic acid	31-33	RNI-like superfamily protein	Arabidopsis thaliana	59-63
31876387-3	2020	The induced JA is converted to JA-Ile and perceived by the COI1-JAZ co-receptor, leading to activation of the transcription factors (TFs) MYC2 and its homologs, which further induce JA-responsive genes.	jasmonic acid	31-33	Basic helix-loop-helix (bHLH) DNA-binding family protein	Arabidopsis thaliana	138-142
31876387-5	2020	Here, we show that in Arabidopsis thaliana MYC2 functions additively with MYC3 and MYC4 to regulate wounding-induced JA accumulation by directly binding to the promoters of genes function in JA biosynthesis and catabolism to promote their transcription.	jasmonic acid	117-119	Basic helix-loop-helix (bHLH) DNA-binding family protein	Arabidopsis thaliana	43-47
31876387-5	2020	Here, we show that in Arabidopsis thaliana MYC2 functions additively with MYC3 and MYC4 to regulate wounding-induced JA accumulation by directly binding to the promoters of genes function in JA biosynthesis and catabolism to promote their transcription.	jasmonic acid	117-119	Basic helix-loop-helix (bHLH) DNA-binding family protein	Arabidopsis thaliana	74-78
31876387-5	2020	Here, we show that in Arabidopsis thaliana MYC2 functions additively with MYC3 and MYC4 to regulate wounding-induced JA accumulation by directly binding to the promoters of genes function in JA biosynthesis and catabolism to promote their transcription.	jasmonic acid	117-119	Basic helix-loop-helix (bHLH) DNA-binding family protein	Arabidopsis thaliana	83-87
31876387-5	2020	Here, we show that in Arabidopsis thaliana MYC2 functions additively with MYC3 and MYC4 to regulate wounding-induced JA accumulation by directly binding to the promoters of genes function in JA biosynthesis and catabolism to promote their transcription.	jasmonic acid	191-193	Basic helix-loop-helix (bHLH) DNA-binding family protein	Arabidopsis thaliana	43-47
31876387-5	2020	Here, we show that in Arabidopsis thaliana MYC2 functions additively with MYC3 and MYC4 to regulate wounding-induced JA accumulation by directly binding to the promoters of genes function in JA biosynthesis and catabolism to promote their transcription.	jasmonic acid	191-193	Basic helix-loop-helix (bHLH) DNA-binding family protein	Arabidopsis thaliana	74-78
31876387-5	2020	Here, we show that in Arabidopsis thaliana MYC2 functions additively with MYC3 and MYC4 to regulate wounding-induced JA accumulation by directly binding to the promoters of genes function in JA biosynthesis and catabolism to promote their transcription.	jasmonic acid	191-193	Basic helix-loop-helix (bHLH) DNA-binding family protein	Arabidopsis thaliana	83-87
32563451-5	2020	In this study, we confirmed that GTR1 is induced by both JA and salinity.	jasmonic acid	57-59	Major facilitator superfamily protein	Arabidopsis thaliana	33-37
32563451-7	2020	The JA responsive genes, JAZ1, JAZ5, MYC2, LOX3, are down-regulated in gtr1 mutant.	jasmonic acid	4-6	jasmonate-zim-domain protein 1	Arabidopsis thaliana	25-29
32563451-7	2020	The JA responsive genes, JAZ1, JAZ5, MYC2, LOX3, are down-regulated in gtr1 mutant.	jasmonic acid	4-6	jasmonate-zim-domain protein 5	Arabidopsis thaliana	31-35
32563451-7	2020	The JA responsive genes, JAZ1, JAZ5, MYC2, LOX3, are down-regulated in gtr1 mutant.	jasmonic acid	4-6	Basic helix-loop-helix (bHLH) DNA-binding family protein	Arabidopsis thaliana	37-41
32563451-7	2020	The JA responsive genes, JAZ1, JAZ5, MYC2, LOX3, are down-regulated in gtr1 mutant.	jasmonic acid	4-6	lipoxygenase 3	Arabidopsis thaliana	43-47
32563451-7	2020	The JA responsive genes, JAZ1, JAZ5, MYC2, LOX3, are down-regulated in gtr1 mutant.	jasmonic acid	4-6	Major facilitator superfamily protein	Arabidopsis thaliana	71-75
32563451-10	2020	Since HKT1 is a negative regulator for lateral root development under salt stress, we proposed that GTR1 alleviates the repression of lateral root development by salt stress by mediating JA signaling and repressing HKT1 expression.	jasmonic acid	187-189	high-affinity K+ transporter 1	Arabidopsis thaliana	6-10
32563451-10	2020	Since HKT1 is a negative regulator for lateral root development under salt stress, we proposed that GTR1 alleviates the repression of lateral root development by salt stress by mediating JA signaling and repressing HKT1 expression.	jasmonic acid	187-189	Major facilitator superfamily protein	Arabidopsis thaliana	100-104
32664460-3	2020	Exogenous JA treatments not only induced the transcript accumulation of UPR marker gene SlBiP but also elevated transcript levels of SlIRE1 and SlbZIP60.	jasmonic acid	10-12	BEL1-like homeodomain protein 2	Solanum lycopersicum	88-93
32520524-8	2020	In addition, elevated levels of JA and its metabolites, jasmonate/ethylene-driven upregulation of PLANT DEFENSIN 1.2 (PDF1.2) and other defensins, and also temporarily elevated levels of reactive oxygen species marked the plant response to 3-methoxy-BAPA treatment.	jasmonic acid	56-65	plant defensin 1.2	Arabidopsis thaliana	98-116
32520524-8	2020	In addition, elevated levels of JA and its metabolites, jasmonate/ethylene-driven upregulation of PLANT DEFENSIN 1.2 (PDF1.2) and other defensins, and also temporarily elevated levels of reactive oxygen species marked the plant response to 3-methoxy-BAPA treatment.	jasmonic acid	56-65	plant defensin 1.2	Arabidopsis thaliana	118-124
32399789-7	2020	Jasmonate (JA)-responsive genes, viz., PDF, and LOX genes, were also upregulated in chilli plants challenged with GBNV.	jasmonic acid	11-13	lysyl oxidase	Homo sapiens	48-51
32647129-2	2020	JA-Ile mediates the interaction between the F-box protein COI1 (part of the SCFCOI1 E3 ubiquitin ligase) and a JAZ repressor leading to early jasmonate responses.	jasmonic acid	142-151	RNI-like superfamily protein	Arabidopsis thaliana	58-62
32399789-7	2020	Jasmonate (JA)-responsive genes, viz., PDF, and LOX genes, were also upregulated in chilli plants challenged with GBNV.	jasmonic acid	0-9	lysyl oxidase	Homo sapiens	48-51
30484042-8	2020	The regulatory and defense genes, LePR-1a and Lipoxygenase (LOX), involved in the salicylic acid (SA) and (JA) signaling pathways, respectively, were highly expressed in tomato plants treated with ZONPs compared to untreated plants.	jasmonic acid	107-109	linoleate 9S-lipoxygenase A	Solanum lycopersicum	46-58
32314432-7	2020	Unexpectedly, At5g10650 was identified as JAV1-ASSOCIATED UBIQUITIN LIGASE1 (JUL1), which was recently reported to participate in the jasmonate signaling pathway.	jasmonic acid	134-143	VQ motif-containing protein	Arabidopsis thaliana	42-75
32587286-8	2020	GUS reporter assays indicated expression of the SA-dependent PR1 gene in plants treated with nine elicitors, whereas the JA-dependent LOX2 gene was only expressed upon MeJA treatment.	jasmonic acid	121-123	lipoxygenase 2	Arabidopsis thaliana	134-138
32676090-1	2020	Fatty Acid Desaturase 7 (FAD7) generates polyunsaturated fatty acids, promoting the desaturation of chloroplast membranes; it also provides an essential precursor for the synthesis of jasmonic acid (JA), a phytohormone that can influence plant growth, development, and primary metabolism.	jasmonic acid	184-197	omega-3 fatty acid desaturase	Solanum lycopersicum	0-23
32676090-1	2020	Fatty Acid Desaturase 7 (FAD7) generates polyunsaturated fatty acids, promoting the desaturation of chloroplast membranes; it also provides an essential precursor for the synthesis of jasmonic acid (JA), a phytohormone that can influence plant growth, development, and primary metabolism.	jasmonic acid	184-197	omega-3 fatty acid desaturase	Solanum lycopersicum	25-29
32676090-1	2020	Fatty Acid Desaturase 7 (FAD7) generates polyunsaturated fatty acids, promoting the desaturation of chloroplast membranes; it also provides an essential precursor for the synthesis of jasmonic acid (JA), a phytohormone that can influence plant growth, development, and primary metabolism.	jasmonic acid	199-201	omega-3 fatty acid desaturase	Solanum lycopersicum	0-23
32676090-1	2020	Fatty Acid Desaturase 7 (FAD7) generates polyunsaturated fatty acids, promoting the desaturation of chloroplast membranes; it also provides an essential precursor for the synthesis of jasmonic acid (JA), a phytohormone that can influence plant growth, development, and primary metabolism.	jasmonic acid	199-201	omega-3 fatty acid desaturase	Solanum lycopersicum	25-29
30484042-8	2020	The regulatory and defense genes, LePR-1a and Lipoxygenase (LOX), involved in the salicylic acid (SA) and (JA) signaling pathways, respectively, were highly expressed in tomato plants treated with ZONPs compared to untreated plants.	jasmonic acid	107-109	linoleate 9S-lipoxygenase A	Solanum lycopersicum	60-63
32172019-13	2020	Combined with the previous findings that GLVs activate JA biosynthesis, these results suggest that both LOX10-derived substrates and/or GLVs are involved in the large second phase of JA synthesis proximal to the wound.	jasmonic acid	55-57	linoleate 13S-lipoxygenase10	Zea mays	104-109
32319186-6	2020	The lre-MIR159a overexpression also led to repressed expression of two targets of miR159, AtMYB33 and AtMYB65, and enhanced accumulation of hormone-related genes, including AtPR1, AtPR2, AtNPR1, AtPDF1.2, and AtLOX for both the jasmonic acid and salicylic acid pathways.	jasmonic acid	228-241	myb domain protein 33	Arabidopsis thaliana	90-97
32319186-6	2020	The lre-MIR159a overexpression also led to repressed expression of two targets of miR159, AtMYB33 and AtMYB65, and enhanced accumulation of hormone-related genes, including AtPR1, AtPR2, AtNPR1, AtPDF1.2, and AtLOX for both the jasmonic acid and salicylic acid pathways.	jasmonic acid	228-241	myb domain protein 65	Arabidopsis thaliana	102-109
32265268-3	2020	Here, we show that the rapid activation of clade-A mitogen-activated protein kinases (MAPKs) MPK3 and MPK6 by wounding depends on the upstream MAPK kinases MKK4 and MKK5 but is independent of jasmonic acid (JA) signaling.	jasmonic acid	192-205	mitogen-activated protein kinase 3	Arabidopsis thaliana	93-97
32172019-13	2020	Combined with the previous findings that GLVs activate JA biosynthesis, these results suggest that both LOX10-derived substrates and/or GLVs are involved in the large second phase of JA synthesis proximal to the wound.	jasmonic acid	183-185	linoleate 13S-lipoxygenase10	Zea mays	104-109
32265268-3	2020	Here, we show that the rapid activation of clade-A mitogen-activated protein kinases (MAPKs) MPK3 and MPK6 by wounding depends on the upstream MAPK kinases MKK4 and MKK5 but is independent of jasmonic acid (JA) signaling.	jasmonic acid	192-205	MAP kinase 6	Arabidopsis thaliana	102-106
32172019-18	2020	Our results show that GLV-deficiency and reduced JA in lox10 mutants had a greater impact on wound-induced local and systemic tissue oxylipin responses compared to the solely JA-deficient opr7opr8 double mutants.	jasmonic acid	49-51	linoleate 13S-lipoxygenase10	Zea mays	55-60
32265268-3	2020	Here, we show that the rapid activation of clade-A mitogen-activated protein kinases (MAPKs) MPK3 and MPK6 by wounding depends on the upstream MAPK kinases MKK4 and MKK5 but is independent of jasmonic acid (JA) signaling.	jasmonic acid	207-209	mitogen-activated protein kinase 3	Arabidopsis thaliana	93-97
32265268-3	2020	Here, we show that the rapid activation of clade-A mitogen-activated protein kinases (MAPKs) MPK3 and MPK6 by wounding depends on the upstream MAPK kinases MKK4 and MKK5 but is independent of jasmonic acid (JA) signaling.	jasmonic acid	207-209	MAP kinase 6	Arabidopsis thaliana	102-106
32490347-5	2020	Based on these interaction results, we next revealed the signaling cross talk between jasmonate and abscisic acid by characterizing the JAZ1-PYL4 and JAZ1-ABI1 interactions.	jasmonic acid	86-95	jasmonate-zim-domain protein 1	Arabidopsis thaliana	136-140
32265268-3	2020	Here, we show that the rapid activation of clade-A mitogen-activated protein kinases (MAPKs) MPK3 and MPK6 by wounding depends on the upstream MAPK kinases MKK4 and MKK5 but is independent of jasmonic acid (JA) signaling.	jasmonic acid	207-209	mitogen-activated protein kinase kinase 4	Arabidopsis thaliana	156-160
32265268-3	2020	Here, we show that the rapid activation of clade-A mitogen-activated protein kinases (MAPKs) MPK3 and MPK6 by wounding depends on the upstream MAPK kinases MKK4 and MKK5 but is independent of jasmonic acid (JA) signaling.	jasmonic acid	207-209	MAP kinase kinase 5	Arabidopsis thaliana	165-169
32265268-6	2020	We provide evidence that the activation of this MKK3-MPK1/2/7 module occurs mainly through wound-induced JA production via the transcriptional regulation of upstream clade-III MAP3Ks, particularly MAP3K14.	jasmonic acid	105-107	mitogen-activated protein kinase homolog MMK2-like	Nicotiana tabacum	53-61
32490347-5	2020	Based on these interaction results, we next revealed the signaling cross talk between jasmonate and abscisic acid by characterizing the JAZ1-PYL4 and JAZ1-ABI1 interactions.	jasmonic acid	86-95	PYR1-like 4	Arabidopsis thaliana	141-145
32490347-5	2020	Based on these interaction results, we next revealed the signaling cross talk between jasmonate and abscisic acid by characterizing the JAZ1-PYL4 and JAZ1-ABI1 interactions.	jasmonic acid	86-95	jasmonate-zim-domain protein 1	Arabidopsis thaliana	150-154
32490347-5	2020	Based on these interaction results, we next revealed the signaling cross talk between jasmonate and abscisic acid by characterizing the JAZ1-PYL4 and JAZ1-ABI1 interactions.	jasmonic acid	86-95	Protein phosphatase 2C family protein	Arabidopsis thaliana	155-159
32372640-6	2020	Knockout of SlMYC2 significantly decreased the activities of disease defensive and antioxidant enzymes, as well as the expression levels of pathogen-related (PR) genes (SlPR-1 and SlPR-STH2) and the key genes related to jasmonic acid (JA) biosynthesis and signaling pathway including allene oxide cyclase (SlAOC), lipoxygenase D (SlLOXD), SlMYC2, and coronatine insensitive 1 (SlCOI1), and consequently aggravated the disease symptoms.	jasmonic acid	220-233	transcription factor MYC2	Solanum lycopersicum	12-18
32508858-6	2020	This review highlights the role of AC2/C2 in affecting the jasmonic acid and salicylic acid (JA and SA) pathways, the ubiquitin/proteasome system (UPS), and RNA silencing pathways.	jasmonic acid	59-72	adenylate cyclase 2	Homo sapiens	35-38
32372640-6	2020	Knockout of SlMYC2 significantly decreased the activities of disease defensive and antioxidant enzymes, as well as the expression levels of pathogen-related (PR) genes (SlPR-1 and SlPR-STH2) and the key genes related to jasmonic acid (JA) biosynthesis and signaling pathway including allene oxide cyclase (SlAOC), lipoxygenase D (SlLOXD), SlMYC2, and coronatine insensitive 1 (SlCOI1), and consequently aggravated the disease symptoms.	jasmonic acid	235-237	transcription factor MYC2	Solanum lycopersicum	12-18
32385404-0	2020	Expansin-like Exl1 from Pectobacterium is a virulence factor required for host infection, and induces a defence plant response involving ROS, and jasmonate, ethylene and salicylic acid signalling pathways in Arabidopsis thaliana.	jasmonic acid	146-155	Phosphate-responsive 1 family protein	Arabidopsis thaliana	14-18
32489516-3	2020	In this study, we used the electrical penetration graph (EPG) technique to monitor and quantify the different CLA feeding patterns on the maize JA-deficient 12-oxo-phytodienoic acid reductase (opr7opr8) plants.	jasmonic acid	144-146	12-oxophytodienoate reductase7	Zea mays	193-201
32123042-1	2020	Jasmonate-induced protein 60 (JIP60) is a ribosome-inactivating protein (RIP) from barley (Hordeum vulgare) and is involved in the plant immune response dependent on jasmonate hormones.	jasmonic acid	0-9	Protein synthesis inhibitor II	Hordeum vulgare	42-71
32154880-5	2020	The first detailed TTG1-dependent metabolic pathways could be proposed for the biosynthesis of mucilage, jasmonic acid and cuticle including wax ester in developing seeds.	jasmonic acid	105-118	Transducin/WD40 repeat-like superfamily protein	Arabidopsis thaliana	19-23
32123042-1	2020	Jasmonate-induced protein 60 (JIP60) is a ribosome-inactivating protein (RIP) from barley (Hordeum vulgare) and is involved in the plant immune response dependent on jasmonate hormones.	jasmonic acid	0-9	Protein synthesis inhibitor II	Hordeum vulgare	73-76
32123042-1	2020	Jasmonate-induced protein 60 (JIP60) is a ribosome-inactivating protein (RIP) from barley (Hordeum vulgare) and is involved in the plant immune response dependent on jasmonate hormones.	jasmonic acid	166-175	Protein synthesis inhibitor II	Hordeum vulgare	42-71
32123042-1	2020	Jasmonate-induced protein 60 (JIP60) is a ribosome-inactivating protein (RIP) from barley (Hordeum vulgare) and is involved in the plant immune response dependent on jasmonate hormones.	jasmonic acid	166-175	Protein synthesis inhibitor II	Hordeum vulgare	73-76
32388423-5	2020	Correspondingly, the JA biosynthesis genes (AtAOC1 and AtOPR3) and signaling genes (AtJAZ5, AtJAZ10 and AtMYB15) are down-regulated in the ROC1S58F mutant compared with the WT.	jasmonic acid	21-23	allene oxide cyclase 1	Arabidopsis thaliana	44-50
32321430-6	2020	The role of jasmonate signalling was explored using the jasmonate response mutants jar1-1 and coi1-16.	jasmonic acid	56-65	Auxin-responsive GH3 family protein	Arabidopsis thaliana	83-87
32388423-5	2020	Correspondingly, the JA biosynthesis genes (AtAOC1 and AtOPR3) and signaling genes (AtJAZ5, AtJAZ10 and AtMYB15) are down-regulated in the ROC1S58F mutant compared with the WT.	jasmonic acid	21-23	oxophytodienoate-reductase 3	Arabidopsis thaliana	55-61
32321430-7	2020	While the jar1-1 mutant lacked jasmonate-isoleucine and jasmonate-leucine, it accumulated 12-oxo-phytodienoic acid at low temperature on agar medium.	jasmonic acid	31-40	Auxin-responsive GH3 family protein	Arabidopsis thaliana	10-14
32321430-7	2020	While the jar1-1 mutant lacked jasmonate-isoleucine and jasmonate-leucine, it accumulated 12-oxo-phytodienoic acid at low temperature on agar medium.	jasmonic acid	56-65	Auxin-responsive GH3 family protein	Arabidopsis thaliana	10-14
32388423-5	2020	Correspondingly, the JA biosynthesis genes (AtAOC1 and AtOPR3) and signaling genes (AtJAZ5, AtJAZ10 and AtMYB15) are down-regulated in the ROC1S58F mutant compared with the WT.	jasmonic acid	21-23	jasmonate-zim-domain protein 5	Arabidopsis thaliana	84-90
32388423-5	2020	Correspondingly, the JA biosynthesis genes (AtAOC1 and AtOPR3) and signaling genes (AtJAZ5, AtJAZ10 and AtMYB15) are down-regulated in the ROC1S58F mutant compared with the WT.	jasmonic acid	21-23	jasmonate-zim-domain protein 10	Arabidopsis thaliana	92-99
32388423-5	2020	Correspondingly, the JA biosynthesis genes (AtAOC1 and AtOPR3) and signaling genes (AtJAZ5, AtJAZ10 and AtMYB15) are down-regulated in the ROC1S58F mutant compared with the WT.	jasmonic acid	21-23	myb domain protein 15	Arabidopsis thaliana	104-111
32211010-10	2020	The production of SA and JA in nitrate reductase loss-of function mutant (nia1nia2) plants was also induced by the 3BN treatments, with a greater induction for JA.	jasmonic acid	25-27	nitrate reductase 1	Arabidopsis thaliana	74-82
31879762-4	2020	In Arabidopsis, NAI2 is expressed in seedlings where cER bodies are formed, whereas TSA1 is expressed in JA-treated leaves where iER bodies are formed.	jasmonic acid	105-107	tryptophan synthase alpha chain	Arabidopsis thaliana	84-88
31879762-5	2020	We found that the expression of NAI2 in seedlings and the JA inducibility of TSA1 are conserved across other Brassicaceae plants.	jasmonic acid	58-60	tryptophan synthase alpha chain	Arabidopsis thaliana	77-81
31879762-6	2020	The accumulation of NAI2 transcripts in Arabidopsis seedlings is dependent on the transcription factor NAI1, whereas the JA induction of TSA1 in rosette leaves is dependent on MYC2, MYC3 and MYC4.	jasmonic acid	121-123	tryptophan synthase alpha chain	Arabidopsis thaliana	137-141
31879762-6	2020	The accumulation of NAI2 transcripts in Arabidopsis seedlings is dependent on the transcription factor NAI1, whereas the JA induction of TSA1 in rosette leaves is dependent on MYC2, MYC3 and MYC4.	jasmonic acid	121-123	Basic helix-loop-helix (bHLH) DNA-binding family protein	Arabidopsis thaliana	176-180
32265961-3	2020	The NPR1 gene has also been shown to be involved in the crosstalk between SAR signaling and the jasmonic acid-ethylene (JA/Et) pathway, which is involved in the response to necrotrophic fungi.	jasmonic acid	96-109	regulatory protein (NPR1)	Arabidopsis thaliana	4-8
32123086-0	2020	CUL3BPM E3 ubiquitin ligases regulate MYC2, MYC3, and MYC4 stability and JA responses.	jasmonic acid	73-75	cullin 3	Homo sapiens	0-4
32123086-10	2020	Our results uncover a layer for JA-pathway regulation by CUL3BPM-mediated degradation of MYC transcription factors.	jasmonic acid	32-34	cullin 3	Homo sapiens	57-61
32123086-10	2020	Our results uncover a layer for JA-pathway regulation by CUL3BPM-mediated degradation of MYC transcription factors.	jasmonic acid	32-34	MYC proto-oncogene, bHLH transcription factor	Homo sapiens	89-92
32211010-10	2020	The production of SA and JA in nitrate reductase loss-of function mutant (nia1nia2) plants was also induced by the 3BN treatments, with a greater induction for JA.	jasmonic acid	160-162	nitrate reductase 1	Arabidopsis thaliana	74-82
32170290-2	2020	Here, we investigated the signalling pathway of the hormone jasmonic acid (JA), which controls a plethora of critically important processes in plants and is orchestrated by the transcription factor MYC2 and its closest relatives in Arabidopsis thaliana.	jasmonic acid	60-73	Basic helix-loop-helix (bHLH) DNA-binding family protein	Arabidopsis thaliana	198-202
32194589-2	2020	Arabidopsis Mediator subunits, MED18 and MED25, have previously been shown to modulate disease resistance against fungal and bacterial pathogens through their role in jasmonic acid (JA) signaling.	jasmonic acid	167-180	mediator of RNA polymerase II transcription subunit	Arabidopsis thaliana	31-36
32194589-2	2020	Arabidopsis Mediator subunits, MED18 and MED25, have previously been shown to modulate disease resistance against fungal and bacterial pathogens through their role in jasmonic acid (JA) signaling.	jasmonic acid	167-180	phytochrome and flowering time regulatory protein (PFT1)	Arabidopsis thaliana	41-46
32194589-2	2020	Arabidopsis Mediator subunits, MED18 and MED25, have previously been shown to modulate disease resistance against fungal and bacterial pathogens through their role in jasmonic acid (JA) signaling.	jasmonic acid	182-184	mediator of RNA polymerase II transcription subunit	Arabidopsis thaliana	31-36
32194589-2	2020	Arabidopsis Mediator subunits, MED18 and MED25, have previously been shown to modulate disease resistance against fungal and bacterial pathogens through their role in jasmonic acid (JA) signaling.	jasmonic acid	182-184	phytochrome and flowering time regulatory protein (PFT1)	Arabidopsis thaliana	41-46
32194589-8	2020	The upregulation of SA signaling and suppression of JA signaling in med18 may have led to more targeted oxidative burst and programmed cell death to control viruses.	jasmonic acid	52-54	mediator of RNA polymerase II transcription subunit	Arabidopsis thaliana	68-73
32043408-0	2020	JA modulates phytochrome a signaling via repressing FHY3 activity by JAZ proteins.	jasmonic acid	0-2	zinc finger protein 346	Homo sapiens	69-72
32170290-2	2020	Here, we investigated the signalling pathway of the hormone jasmonic acid (JA), which controls a plethora of critically important processes in plants and is orchestrated by the transcription factor MYC2 and its closest relatives in Arabidopsis thaliana.	jasmonic acid	75-77	Basic helix-loop-helix (bHLH) DNA-binding family protein	Arabidopsis thaliana	198-202
31834385-1	2020	Arabidopsis (Arabidopsis thaliana) 12-oxophytodienoic acid reductase isoform 3 (OPR3) is involved in the synthesis of jasmonic acid by reducing the alpha,beta-unsaturated double bond of the cyclopentenone moiety in 12-oxo-phytodienoic acid (12-OPDA).	jasmonic acid	118-131	oxophytodienoate-reductase 3	Arabidopsis thaliana	35-78
31834385-1	2020	Arabidopsis (Arabidopsis thaliana) 12-oxophytodienoic acid reductase isoform 3 (OPR3) is involved in the synthesis of jasmonic acid by reducing the alpha,beta-unsaturated double bond of the cyclopentenone moiety in 12-oxo-phytodienoic acid (12-OPDA).	jasmonic acid	118-131	oxophytodienoate-reductase 3	Arabidopsis thaliana	80-84
32093127-3	2020	As the receptor of jasmonates, the F-box protein COI1 is critical to the JA signaling required for plant development, defense, and metabolic homeostasis.	jasmonic acid	19-29	RNI-like superfamily protein	Arabidopsis thaliana	49-53
31862839-8	2020	Disruption of MYC2, a key gene in JA signaling, in the mob1a/1b background partially alleviated the root defects and JA hypersensitivity observed in mob1a/1b.	jasmonic acid	34-36	Basic helix-loop-helix (bHLH) DNA-binding family protein	Arabidopsis thaliana	14-18
32033528-3	2020	In JA pathway, JAZs interact with MYB21 and MYB24 to control filament elongation.	jasmonic acid	3-5	myb domain protein 21	Arabidopsis thaliana	34-39
32033528-3	2020	In JA pathway, JAZs interact with MYB21 and MYB24 to control filament elongation.	jasmonic acid	3-5	myb domain protein 24	Arabidopsis thaliana	44-49
32046227-2	2020	A major jasmonate is (+)-7-iso-jasmonoyl-l-isoleucine (JA-Ile), which is perceived by the unique COI1-JAZ coreceptor system.	jasmonic acid	8-17	zinc finger protein 346	Homo sapiens	102-105
31998332-0	2019	The Lamin-Like LITTLE NUCLEI 1 (LINC1) Regulates Pattern-Triggered Immunity and Jasmonic Acid Signaling.	jasmonic acid	80-93	little nuclei1	Arabidopsis thaliana	15-30
31753845-5	2020	Both jasmonic acid-related gene expression and jasmonic acid precursors specifically accumulated in pao1, a mutant deficient in PAO.	jasmonic acid	5-18	polyamine oxidase 1	Arabidopsis thaliana	100-104
31753845-5	2020	Both jasmonic acid-related gene expression and jasmonic acid precursors specifically accumulated in pao1, a mutant deficient in PAO.	jasmonic acid	47-60	polyamine oxidase 1	Arabidopsis thaliana	100-104
31998332-11	2019	In accordance with a general role of LINC1 in JA signaling, linc1 mutants are hypersensitive to growth inhibition to external JA.	jasmonic acid	46-48	little nuclei1	Arabidopsis thaliana	60-65
31998332-11	2019	In accordance with a general role of LINC1 in JA signaling, linc1 mutants are hypersensitive to growth inhibition to external JA.	jasmonic acid	126-128	little nuclei1	Arabidopsis thaliana	37-42
31998332-0	2019	The Lamin-Like LITTLE NUCLEI 1 (LINC1) Regulates Pattern-Triggered Immunity and Jasmonic Acid Signaling.	jasmonic acid	80-93	little nuclei1	Arabidopsis thaliana	32-37
31998332-11	2019	In accordance with a general role of LINC1 in JA signaling, linc1 mutants are hypersensitive to growth inhibition to external JA.	jasmonic acid	126-128	little nuclei1	Arabidopsis thaliana	60-65
31998332-12	2019	In summary, our findings show that the lamin-like LINC1 protein plays a key role in JA signaling and regulation of PTI responses in Arabidopsis.	jasmonic acid	84-86	little nuclei1	Arabidopsis thaliana	50-55
31998332-3	2019	We show here that among the four Arabidopsis lamin homologs LITTLE NUCLEI/CROWDED NUCLEI (LINC/CRWN), LINC1 plays an important role in PTI and jasmonic acid (JA) signaling.	jasmonic acid	143-156	little nuclei1	Arabidopsis thaliana	102-107
31998332-3	2019	We show here that among the four Arabidopsis lamin homologs LITTLE NUCLEI/CROWDED NUCLEI (LINC/CRWN), LINC1 plays an important role in PTI and jasmonic acid (JA) signaling.	jasmonic acid	158-160	little nuclei1	Arabidopsis thaliana	102-107
31998332-5	2019	We also demonstrate that linc1 mutants are compromised in regulating PAMP-triggered pathogen-related genes, in particular encoding factors involved in JA signaling and responses.	jasmonic acid	151-153	little nuclei1	Arabidopsis thaliana	25-30
31998332-7	2019	Moreover, PAMP triggers JA and JA-Ile accumulation in linc1 mutants, whereas salicylic acid levels are unchanged.	jasmonic acid	24-26	little nuclei1	Arabidopsis thaliana	54-59
31998332-7	2019	Moreover, PAMP triggers JA and JA-Ile accumulation in linc1 mutants, whereas salicylic acid levels are unchanged.	jasmonic acid	31-33	little nuclei1	Arabidopsis thaliana	54-59
31998332-11	2019	In accordance with a general role of LINC1 in JA signaling, linc1 mutants are hypersensitive to growth inhibition to external JA.	jasmonic acid	46-48	little nuclei1	Arabidopsis thaliana	37-42
31907627-8	2020	JA might rapidly activate RAV1 and KAN1 to repress brassinosteroid (BR) response genes, upregulate KAN1, the C2H2 TF families ZF2, ZF3, ZAT6, and STZ/ZAT10 to repress the biosynthesis, transport, and signaling of auxin to arrest growth.	jasmonic acid	0-2	related to ABI3/VP1 1	Arabidopsis thaliana	26-30
31907627-8	2020	JA might rapidly activate RAV1 and KAN1 to repress brassinosteroid (BR) response genes, upregulate KAN1, the C2H2 TF families ZF2, ZF3, ZAT6, and STZ/ZAT10 to repress the biosynthesis, transport, and signaling of auxin to arrest growth.	jasmonic acid	0-2	Homeodomain-like superfamily protein	Arabidopsis thaliana	35-39
31936090-6	2020	JA treatment elevated the activities of SOD, POD, CAT, APOX, DHAR, GPOX, GR, and PPO in nematode-infested seedlings.	jasmonic acid	0-2	polyphenol oxidase B, chloroplastic	Solanum lycopersicum	81-84
31907627-8	2020	JA might rapidly activate RAV1 and KAN1 to repress brassinosteroid (BR) response genes, upregulate KAN1, the C2H2 TF families ZF2, ZF3, ZAT6, and STZ/ZAT10 to repress the biosynthesis, transport, and signaling of auxin to arrest growth.	jasmonic acid	0-2	Homeodomain-like superfamily protein	Arabidopsis thaliana	99-103
31907627-8	2020	JA might rapidly activate RAV1 and KAN1 to repress brassinosteroid (BR) response genes, upregulate KAN1, the C2H2 TF families ZF2, ZF3, ZAT6, and STZ/ZAT10 to repress the biosynthesis, transport, and signaling of auxin to arrest growth.	jasmonic acid	0-2	zinc-finger protein 2	Arabidopsis thaliana	126-129
31907627-8	2020	JA might rapidly activate RAV1 and KAN1 to repress brassinosteroid (BR) response genes, upregulate KAN1, the C2H2 TF families ZF2, ZF3, ZAT6, and STZ/ZAT10 to repress the biosynthesis, transport, and signaling of auxin to arrest growth.	jasmonic acid	0-2	zinc-finger protein 3	Arabidopsis thaliana	131-134
31907627-8	2020	JA might rapidly activate RAV1 and KAN1 to repress brassinosteroid (BR) response genes, upregulate KAN1, the C2H2 TF families ZF2, ZF3, ZAT6, and STZ/ZAT10 to repress the biosynthesis, transport, and signaling of auxin to arrest growth.	jasmonic acid	0-2	6	Arabidopsis thaliana	136-140
31907627-8	2020	JA might rapidly activate RAV1 and KAN1 to repress brassinosteroid (BR) response genes, upregulate KAN1, the C2H2 TF families ZF2, ZF3, ZAT6, and STZ/ZAT10 to repress the biosynthesis, transport, and signaling of auxin to arrest growth.	jasmonic acid	0-2	salt tolerance zinc finger	Arabidopsis thaliana	150-155
31641025-0	2020	A Jasmonate-Activated MYC2-Dof2.1-MYC2 Transcriptional Loop Promotes Leaf Senescence in Arabidopsis.	jasmonic acid	2-11	Basic helix-loop-helix (bHLH) DNA-binding family protein	Arabidopsis thaliana	22-26
31318448-7	2020	More importantly, application of JA to P5-1 transgenic plants did not reduce their susceptibility to RBSDV infection.	jasmonic acid	33-35	HLA complex P5	Homo sapiens	39-43
31318448-8	2020	Our results suggest that P5-1 inhibits the ubiquitination activity of SCF E3 ligases through an interaction with OsCSN5A, and hinders the RUBylation/deRUBylation of CUL1, leading to an inhibition of the JA response pathway and an enhancement of RBSDV infection in rice.	jasmonic acid	203-205	HLA complex P5	Homo sapiens	25-29
31318448-8	2020	Our results suggest that P5-1 inhibits the ubiquitination activity of SCF E3 ligases through an interaction with OsCSN5A, and hinders the RUBylation/deRUBylation of CUL1, leading to an inhibition of the JA response pathway and an enhancement of RBSDV infection in rice.	jasmonic acid	203-205	KIT ligand	Homo sapiens	70-73
31641025-0	2020	A Jasmonate-Activated MYC2-Dof2.1-MYC2 Transcriptional Loop Promotes Leaf Senescence in Arabidopsis.	jasmonic acid	2-11	DOF zinc finger protein 2	Arabidopsis thaliana	27-31
31641025-0	2020	A Jasmonate-Activated MYC2-Dof2.1-MYC2 Transcriptional Loop Promotes Leaf Senescence in Arabidopsis.	jasmonic acid	2-11	Basic helix-loop-helix (bHLH) DNA-binding family protein	Arabidopsis thaliana	34-38
31641025-4	2020	Additionally, the dof2 1 knockout mutant showed almost no change in the transcriptome in the absence of JA; in the presence of JA, expression of many senescence-associated genes, including MYC2, which encodes a central regulator of JA responses, was induced to a lesser extent in the dof2 1 mutant than in the wild type.	jasmonic acid	127-129	DOF zinc finger protein 2	Arabidopsis thaliana	18-22
31641025-4	2020	Additionally, the dof2 1 knockout mutant showed almost no change in the transcriptome in the absence of JA; in the presence of JA, expression of many senescence-associated genes, including MYC2, which encodes a central regulator of JA responses, was induced to a lesser extent in the dof2 1 mutant than in the wild type.	jasmonic acid	127-129	Basic helix-loop-helix (bHLH) DNA-binding family protein	Arabidopsis thaliana	189-193
31641025-4	2020	Additionally, the dof2 1 knockout mutant showed almost no change in the transcriptome in the absence of JA; in the presence of JA, expression of many senescence-associated genes, including MYC2, which encodes a central regulator of JA responses, was induced to a lesser extent in the dof2 1 mutant than in the wild type.	jasmonic acid	127-129	DOF zinc finger protein 2	Arabidopsis thaliana	18-22
31641025-4	2020	Additionally, the dof2 1 knockout mutant showed almost no change in the transcriptome in the absence of JA; in the presence of JA, expression of many senescence-associated genes, including MYC2, which encodes a central regulator of JA responses, was induced to a lesser extent in the dof2 1 mutant than in the wild type.	jasmonic acid	127-129	Basic helix-loop-helix (bHLH) DNA-binding family protein	Arabidopsis thaliana	189-193
31641025-6	2020	Interestingly, MYC2 was also identified as a transcriptional activator responsible for JA-inducible expression of Dof2 1 Based on these results, we propose that Dof2.1 acts as an enhancer of JA-induced leaf senescence through the MYC2-Dof2.1-MYC2 feedforward transcriptional loop.	jasmonic acid	87-89	Basic helix-loop-helix (bHLH) DNA-binding family protein	Arabidopsis thaliana	15-19
31641025-6	2020	Interestingly, MYC2 was also identified as a transcriptional activator responsible for JA-inducible expression of Dof2 1 Based on these results, we propose that Dof2.1 acts as an enhancer of JA-induced leaf senescence through the MYC2-Dof2.1-MYC2 feedforward transcriptional loop.	jasmonic acid	87-89	Basic helix-loop-helix (bHLH) DNA-binding family protein	Arabidopsis thaliana	230-234
31641025-6	2020	Interestingly, MYC2 was also identified as a transcriptional activator responsible for JA-inducible expression of Dof2 1 Based on these results, we propose that Dof2.1 acts as an enhancer of JA-induced leaf senescence through the MYC2-Dof2.1-MYC2 feedforward transcriptional loop.	jasmonic acid	87-89	DOF zinc finger protein 2	Arabidopsis thaliana	114-118
31641025-6	2020	Interestingly, MYC2 was also identified as a transcriptional activator responsible for JA-inducible expression of Dof2 1 Based on these results, we propose that Dof2.1 acts as an enhancer of JA-induced leaf senescence through the MYC2-Dof2.1-MYC2 feedforward transcriptional loop.	jasmonic acid	87-89	Basic helix-loop-helix (bHLH) DNA-binding family protein	Arabidopsis thaliana	230-234
31641025-6	2020	Interestingly, MYC2 was also identified as a transcriptional activator responsible for JA-inducible expression of Dof2 1 Based on these results, we propose that Dof2.1 acts as an enhancer of JA-induced leaf senescence through the MYC2-Dof2.1-MYC2 feedforward transcriptional loop.	jasmonic acid	191-193	Basic helix-loop-helix (bHLH) DNA-binding family protein	Arabidopsis thaliana	15-19
31641025-6	2020	Interestingly, MYC2 was also identified as a transcriptional activator responsible for JA-inducible expression of Dof2 1 Based on these results, we propose that Dof2.1 acts as an enhancer of JA-induced leaf senescence through the MYC2-Dof2.1-MYC2 feedforward transcriptional loop.	jasmonic acid	191-193	Basic helix-loop-helix (bHLH) DNA-binding family protein	Arabidopsis thaliana	230-234
31641025-6	2020	Interestingly, MYC2 was also identified as a transcriptional activator responsible for JA-inducible expression of Dof2 1 Based on these results, we propose that Dof2.1 acts as an enhancer of JA-induced leaf senescence through the MYC2-Dof2.1-MYC2 feedforward transcriptional loop.	jasmonic acid	191-193	DOF zinc finger protein 2	Arabidopsis thaliana	114-118
31557372-10	2020	These findings suggest that JAZ4 participates in the canonical JA signaling pathway leading to plant defense response in addition to COI1/MYC-independent functions in plant growth and development, supporting the notion that JAZ4-mediated signaling may have distinct branches.	jasmonic acid	28-30	jasmonate-zim-domain protein 4	Arabidopsis thaliana	224-228
31641025-6	2020	Interestingly, MYC2 was also identified as a transcriptional activator responsible for JA-inducible expression of Dof2 1 Based on these results, we propose that Dof2.1 acts as an enhancer of JA-induced leaf senescence through the MYC2-Dof2.1-MYC2 feedforward transcriptional loop.	jasmonic acid	191-193	Basic helix-loop-helix (bHLH) DNA-binding family protein	Arabidopsis thaliana	230-234
31861935-2	2019	Although their name suggests a specific role in ethylene signalling, some ERF members also co-ordinate signals regulated by other key plant stress hormones such as jasmonate, abscisic acid and salicylate.	jasmonic acid	164-173	ETS2 repressor factor	Homo sapiens	74-77
31603283-8	2019	Furthermore, we found that in both 6 dpi oilseed rape and the Arabidopsis nced3 mutant, the salicylic acid (SA) signalling pathway was induced while the jasmonic acid (JA)/ethylene (ET) signalling pathway was concomitantly mitigated.	jasmonic acid	153-166	nine-cis-epoxycarotenoid dioxygenase 3	Arabidopsis thaliana	74-79
31835299-14	2019	In addition, endogenous JA acted as a positive regulator for the transportation of sodium ions from the roots to the shoots because the mutant opr7opr8 had a higher level of sodium in the roots but a significantly lower level in the shoots than WT.	jasmonic acid	24-26	12-oxophytodienoate reductase7	Zea mays	143-151
31835299-4	2019	In this study, a JA biosynthesis mutant opr7opr8 was used for the investigation of JA roles in the salt stress responses of maize seedlings, whose roots were exposed to 0 to 300 mM NaCl.	jasmonic acid	17-19	12-oxophytodienoate reductase7	Zea mays	40-48
31835299-4	2019	In this study, a JA biosynthesis mutant opr7opr8 was used for the investigation of JA roles in the salt stress responses of maize seedlings, whose roots were exposed to 0 to 300 mM NaCl.	jasmonic acid	83-85	12-oxophytodienoate reductase7	Zea mays	40-48
31835299-6	2019	The results regarding chlorophyll content and leaf senescence showed that opr7opr8 exhibited delayed leaf senescence under salt stress as compared to WT, indicating that JA plays a role in salt-inducing cell death and subsequent leaf senescence.	jasmonic acid	170-172	12-oxophytodienoate reductase7	Zea mays	74-82
31603283-8	2019	Furthermore, we found that in both 6 dpi oilseed rape and the Arabidopsis nced3 mutant, the salicylic acid (SA) signalling pathway was induced while the jasmonic acid (JA)/ethylene (ET) signalling pathway was concomitantly mitigated.	jasmonic acid	168-170	nine-cis-epoxycarotenoid dioxygenase 3	Arabidopsis thaliana	74-79
31597687-6	2019	Analysis of phosphatidic acid (PA), hydrogen peroxide, and jasmonic acid (JA) levels and expression of related genes indicated that the relocalization of PLDdelta is crucial for its activation to produce PA and initiate reactive oxygen species and JA signaling pathways.	jasmonic acid	59-72	phospholipase D delta	Arabidopsis thaliana	154-162
31437321-3	2019	In the current study we show that the PRC1 protein LHP1 is required for the repression of the MYC2 branch of jasmonic acid (JA)/ethylene (ET) pathway of immunity.	jasmonic acid	109-122	cellulose synthase 6	Arabidopsis thaliana	38-42
31437321-3	2019	In the current study we show that the PRC1 protein LHP1 is required for the repression of the MYC2 branch of jasmonic acid (JA)/ethylene (ET) pathway of immunity.	jasmonic acid	109-122	like heterochromatin protein (LHP1)	Arabidopsis thaliana	51-55
31437321-3	2019	In the current study we show that the PRC1 protein LHP1 is required for the repression of the MYC2 branch of jasmonic acid (JA)/ethylene (ET) pathway of immunity.	jasmonic acid	109-122	Basic helix-loop-helix (bHLH) DNA-binding family protein	Arabidopsis thaliana	94-98
31437321-3	2019	In the current study we show that the PRC1 protein LHP1 is required for the repression of the MYC2 branch of jasmonic acid (JA)/ethylene (ET) pathway of immunity.	jasmonic acid	124-126	cellulose synthase 6	Arabidopsis thaliana	38-42
31437321-3	2019	In the current study we show that the PRC1 protein LHP1 is required for the repression of the MYC2 branch of jasmonic acid (JA)/ethylene (ET) pathway of immunity.	jasmonic acid	124-126	like heterochromatin protein (LHP1)	Arabidopsis thaliana	51-55
31437321-3	2019	In the current study we show that the PRC1 protein LHP1 is required for the repression of the MYC2 branch of jasmonic acid (JA)/ethylene (ET) pathway of immunity.	jasmonic acid	124-126	Basic helix-loop-helix (bHLH) DNA-binding family protein	Arabidopsis thaliana	94-98
31551361-10	2019	After aphid infestation, however, pae9 mutants increased their levels of camalexin, glucosinolates, and JA, and no long-term effects were observed on aphid fitness.	jasmonic acid	104-106	Pectinacetylesterase family protein	Arabidopsis thaliana	34-38
31597687-6	2019	Analysis of phosphatidic acid (PA), hydrogen peroxide, and jasmonic acid (JA) levels and expression of related genes indicated that the relocalization of PLDdelta is crucial for its activation to produce PA and initiate reactive oxygen species and JA signaling pathways.	jasmonic acid	74-76	phospholipase D delta	Arabidopsis thaliana	154-162
31597687-6	2019	Analysis of phosphatidic acid (PA), hydrogen peroxide, and jasmonic acid (JA) levels and expression of related genes indicated that the relocalization of PLDdelta is crucial for its activation to produce PA and initiate reactive oxygen species and JA signaling pathways.	jasmonic acid	248-250	phospholipase D delta	Arabidopsis thaliana	154-162
31795159-3	2019	It starts with the perception of the active JA derivative, jasmonoyl-isoleucine (JA-Ile), by the F-box protein COI1 which is part of the E3-ligase SCFCOI1.	jasmonic acid	44-46	RNI-like superfamily protein	Arabidopsis thaliana	111-115
31795159-3	2019	It starts with the perception of the active JA derivative, jasmonoyl-isoleucine (JA-Ile), by the F-box protein COI1 which is part of the E3-ligase SCFCOI1.	jasmonic acid	81-83	RNI-like superfamily protein	Arabidopsis thaliana	111-115
31795159-4	2019	Binding of JA-Ile enables the interaction between COI1 and JAZ repressor proteins.	jasmonic acid	11-13	RNI-like superfamily protein	Arabidopsis thaliana	50-54
31795159-12	2019	Finally, using protoplasts from the aos coi1 double mutant, which is deficient in JA synthesis and perception, we provide a system that has the potential to study the activity of different COI1 variants in the presence of different ligands.	jasmonic acid	82-84	RNI-like superfamily protein	Arabidopsis thaliana	40-44
31739571-2	2019	Nicotine biosynthesis is controlled developmentally and can be induced by abiotic and biotic stressors via a jasmonic acid (JA)-mediated signal transduction mechanism involving members of the APETALA 2/ethylene-responsive factor (AP2/ERF) and basic helix-loop-helix (bHLH) transcription factor (TF) families.	jasmonic acid	109-122	ethylene-responsive transcription factor RAP2-3-like	Nicotiana tabacum	230-237
31752425-7	2019	The senescence regulatory network was predicted based on these key differentially expressed genes, which indicated that the senescence process is mainly regulated by bHLH, WRKY, and AP2/EREBP family transcription factors, leading to the accumulations of jasmonic acid and ethylene.	jasmonic acid	254-267	WRKY transcription factor WRKY76	Zea mays	172-176
31729958-7	2019	Furthermore, four key transcription factors (TFs), NPR1, TGA4, Pti6, and MYC2, all involved in the SA and JA signal pathways were identified, and the expression profile revealed the different regulation of the pathogenesis related protein1 (PR1) resistance gene, as mediated by the four TFs.	jasmonic acid	106-108	natriuretic peptide receptor 1	Homo sapiens	51-55
31729958-7	2019	Furthermore, four key transcription factors (TFs), NPR1, TGA4, Pti6, and MYC2, all involved in the SA and JA signal pathways were identified, and the expression profile revealed the different regulation of the pathogenesis related protein1 (PR1) resistance gene, as mediated by the four TFs.	jasmonic acid	106-108	transmembrane protein 37	Homo sapiens	231-239
31729958-7	2019	Furthermore, four key transcription factors (TFs), NPR1, TGA4, Pti6, and MYC2, all involved in the SA and JA signal pathways were identified, and the expression profile revealed the different regulation of the pathogenesis related protein1 (PR1) resistance gene, as mediated by the four TFs.	jasmonic acid	106-108	transmembrane protein 37	Homo sapiens	52-55
31739571-2	2019	Nicotine biosynthesis is controlled developmentally and can be induced by abiotic and biotic stressors via a jasmonic acid (JA)-mediated signal transduction mechanism involving members of the APETALA 2/ethylene-responsive factor (AP2/ERF) and basic helix-loop-helix (bHLH) transcription factor (TF) families.	jasmonic acid	124-126	ethylene-responsive transcription factor RAP2-3-like	Nicotiana tabacum	230-237
31326997-4	2019	Under full light the oxylipin cis-12-oxo-phytodienoic acid (OPDA), a precursor of the stress-related phytohormone jasmonic acid, interacts with ABA and MFT to repress germination.	jasmonic acid	114-127	PEBP (phosphatidylethanolamine-binding protein) family protein	Arabidopsis thaliana	152-155
31520787-3	2019	ARF6 and ARF8 are positive regulators of adventitious root initiation upstream of jasmonate, but the exact auxin co-receptor complexes controlling the transcriptional activity of these proteins has remained unknown.	jasmonic acid	82-91	auxin response factor 6	Arabidopsis thaliana	0-4
31520787-3	2019	ARF6 and ARF8 are positive regulators of adventitious root initiation upstream of jasmonate, but the exact auxin co-receptor complexes controlling the transcriptional activity of these proteins has remained unknown.	jasmonic acid	82-91	auxin response factor 8	Arabidopsis thaliana	9-13
31520787-6	2019	We show that TIR1 and AFB2 are positive regulators of AR formation and TIR1 plays a dual role in the control of jasmonic acid (JA) biosynthesis and conjugation, as several JA biosynthesis genes are up-regulated in the tir1-1 mutant.	jasmonic acid	112-125	F-box/RNI-like superfamily protein	Arabidopsis thaliana	71-75
31520787-6	2019	We show that TIR1 and AFB2 are positive regulators of AR formation and TIR1 plays a dual role in the control of jasmonic acid (JA) biosynthesis and conjugation, as several JA biosynthesis genes are up-regulated in the tir1-1 mutant.	jasmonic acid	127-129	F-box/RNI-like superfamily protein	Arabidopsis thaliana	71-75
31520787-6	2019	We show that TIR1 and AFB2 are positive regulators of AR formation and TIR1 plays a dual role in the control of jasmonic acid (JA) biosynthesis and conjugation, as several JA biosynthesis genes are up-regulated in the tir1-1 mutant.	jasmonic acid	172-174	F-box/RNI-like superfamily protein	Arabidopsis thaliana	13-17
31520787-6	2019	We show that TIR1 and AFB2 are positive regulators of AR formation and TIR1 plays a dual role in the control of jasmonic acid (JA) biosynthesis and conjugation, as several JA biosynthesis genes are up-regulated in the tir1-1 mutant.	jasmonic acid	172-174	auxin signaling F-box 2	Arabidopsis thaliana	22-26
31520787-6	2019	We show that TIR1 and AFB2 are positive regulators of AR formation and TIR1 plays a dual role in the control of jasmonic acid (JA) biosynthesis and conjugation, as several JA biosynthesis genes are up-regulated in the tir1-1 mutant.	jasmonic acid	172-174	F-box/RNI-like superfamily protein	Arabidopsis thaliana	71-75
31520787-6	2019	We show that TIR1 and AFB2 are positive regulators of AR formation and TIR1 plays a dual role in the control of jasmonic acid (JA) biosynthesis and conjugation, as several JA biosynthesis genes are up-regulated in the tir1-1 mutant.	jasmonic acid	172-174	F-box/RNI-like superfamily protein	Arabidopsis thaliana	218-224
31520787-7	2019	These results lead us to propose that in the presence of auxin, TIR1 and AFB2 form specific sensing complexes with IAA6, IAA9, and/or IAA17 to modulate JA homeostasis and control AR initiation.	jasmonic acid	152-154	F-box/RNI-like superfamily protein	Arabidopsis thaliana	64-68
31520787-7	2019	These results lead us to propose that in the presence of auxin, TIR1 and AFB2 form specific sensing complexes with IAA6, IAA9, and/or IAA17 to modulate JA homeostasis and control AR initiation.	jasmonic acid	152-154	auxin signaling F-box 2	Arabidopsis thaliana	73-77
31520787-7	2019	These results lead us to propose that in the presence of auxin, TIR1 and AFB2 form specific sensing complexes with IAA6, IAA9, and/or IAA17 to modulate JA homeostasis and control AR initiation.	jasmonic acid	152-154	indole-3-acetic acid 6	Arabidopsis thaliana	115-119
31520787-7	2019	These results lead us to propose that in the presence of auxin, TIR1 and AFB2 form specific sensing complexes with IAA6, IAA9, and/or IAA17 to modulate JA homeostasis and control AR initiation.	jasmonic acid	152-154	indole-3-acetic acid inducible 9	Arabidopsis thaliana	121-125
31520787-7	2019	These results lead us to propose that in the presence of auxin, TIR1 and AFB2 form specific sensing complexes with IAA6, IAA9, and/or IAA17 to modulate JA homeostasis and control AR initiation.	jasmonic acid	152-154	AUX/IAA transcriptional regulator family protein	Arabidopsis thaliana	134-139
31280042-8	2019	JA application enhanced the contents of secondary metabolites (total phenols, polyphenols, flavonoids, and anthocyanin) which were confirmed with enhanced expression of chalcone synthase and phenylalanine ammonia lyase in Pb-exposed seedlings.	jasmonic acid	0-2	phenylalanine ammonia-lyase	Solanum lycopersicum	191-218
31548265-3	2019	In this study, we conducted analyses in Arabidopsis (Arabidopsis thaliana) on the functions of AtIQM1 (IQ-Motif Containing Protein1), a Ca2+-independent CaMBP, in JA biosynthesis and defense against the necrotrophic pathogen Botrytis cinerea using molecular, biochemical, and genetic analyses.	jasmonic acid	163-165	calmodulin-binding family protein	Arabidopsis thaliana	95-101
31548265-4	2019	IQM1 directly interacted with and promoted CATALASE2 (CAT2) expression and CAT2 enzyme activity and indirectly increased the activity of the JA biosynthetic enzymes ACX2 and ACX3 through CAT2, thereby positively regulating JA content and B. cinerea resistance.	jasmonic acid	141-143	calmodulin-binding family protein	Arabidopsis thaliana	0-4
31548265-4	2019	IQM1 directly interacted with and promoted CATALASE2 (CAT2) expression and CAT2 enzyme activity and indirectly increased the activity of the JA biosynthetic enzymes ACX2 and ACX3 through CAT2, thereby positively regulating JA content and B. cinerea resistance.	jasmonic acid	223-225	calmodulin-binding family protein	Arabidopsis thaliana	0-4
31548265-5	2019	In addition, in vitro assays showed that in the presence of CaM5, IQM1 further enhanced the activity of CAT2, suggesting that CaM5 may affect the activity of CAT2 by combining with IQM1 in the absence of Ca2+ Our data indicate that IQM1 is a key regulatory factor in signaling of plant disease responses mediated by JA.	jasmonic acid	316-318	calmodulin 5	Arabidopsis thaliana	60-64
31548265-5	2019	In addition, in vitro assays showed that in the presence of CaM5, IQM1 further enhanced the activity of CAT2, suggesting that CaM5 may affect the activity of CAT2 by combining with IQM1 in the absence of Ca2+ Our data indicate that IQM1 is a key regulatory factor in signaling of plant disease responses mediated by JA.	jasmonic acid	316-318	calmodulin-binding family protein	Arabidopsis thaliana	66-70
31548265-5	2019	In addition, in vitro assays showed that in the presence of CaM5, IQM1 further enhanced the activity of CAT2, suggesting that CaM5 may affect the activity of CAT2 by combining with IQM1 in the absence of Ca2+ Our data indicate that IQM1 is a key regulatory factor in signaling of plant disease responses mediated by JA.	jasmonic acid	316-318	calmodulin 5	Arabidopsis thaliana	126-130
31548265-5	2019	In addition, in vitro assays showed that in the presence of CaM5, IQM1 further enhanced the activity of CAT2, suggesting that CaM5 may affect the activity of CAT2 by combining with IQM1 in the absence of Ca2+ Our data indicate that IQM1 is a key regulatory factor in signaling of plant disease responses mediated by JA.	jasmonic acid	316-318	calmodulin-binding family protein	Arabidopsis thaliana	181-185
31548265-5	2019	In addition, in vitro assays showed that in the presence of CaM5, IQM1 further enhanced the activity of CAT2, suggesting that CaM5 may affect the activity of CAT2 by combining with IQM1 in the absence of Ca2+ Our data indicate that IQM1 is a key regulatory factor in signaling of plant disease responses mediated by JA.	jasmonic acid	316-318	calmodulin-binding family protein	Arabidopsis thaliana	181-185
31481228-4	2019	JAs activate the expression of JA-responsive genes by degrading jasmonate zinc-finger-inflorescence meristem (Zim) domain (JAZ) repressors via the E3 ubiquitin-ligase Skp/Cullin/F-box protein CORONATINE INSENSITIVE1 (COI1) complex (SCFCOI1) by using 26S proteasome.	jasmonic acid	0-3	zinc finger protein 346	Homo sapiens	123-126
31649695-7	2019	Together, our findings indicate that CSN4 and CSN5 play critical roles in JA-dependent basal defense against RKN.	jasmonic acid	74-76	COP9 signalosome complex subunit CSN5	Solanum lycopersicum	46-50
31150089-0	2019	12-Hydroxy-Jasmonoyl-l-Isoleucine Is an Active Jasmonate That Signals through CORONATINE INSENSITIVE 1 and Contributes to the Wound Response in Arabidopsis.	jasmonic acid	47-56	RNI-like superfamily protein	Arabidopsis thaliana	78-102
31481228-4	2019	JAs activate the expression of JA-responsive genes by degrading jasmonate zinc-finger-inflorescence meristem (Zim) domain (JAZ) repressors via the E3 ubiquitin-ligase Skp/Cullin/F-box protein CORONATINE INSENSITIVE1 (COI1) complex (SCFCOI1) by using 26S proteasome.	jasmonic acid	0-3	CDK2 associated cullin domain 1	Homo sapiens	171-177
31481228-4	2019	JAs activate the expression of JA-responsive genes by degrading jasmonate zinc-finger-inflorescence meristem (Zim) domain (JAZ) repressors via the E3 ubiquitin-ligase Skp/Cullin/F-box protein CORONATINE INSENSITIVE1 (COI1) complex (SCFCOI1) by using 26S proteasome.	jasmonic acid	0-2	zinc finger protein 346	Homo sapiens	123-126
31481228-4	2019	JAs activate the expression of JA-responsive genes by degrading jasmonate zinc-finger-inflorescence meristem (Zim) domain (JAZ) repressors via the E3 ubiquitin-ligase Skp/Cullin/F-box protein CORONATINE INSENSITIVE1 (COI1) complex (SCFCOI1) by using 26S proteasome.	jasmonic acid	0-2	CDK2 associated cullin domain 1	Homo sapiens	171-177
31326115-3	2019	NtERF91 was preferentially expressed in roots and induced by jasmonic acid.	jasmonic acid	61-74	ethylene-responsive transcription factor 13-like	Nicotiana tabacum	0-7
31399934-7	2019	Proteomics analysis revealed that BnMPK4 activation affects multiple pathways (e.g., metabolism, redox regulation, jasmonic acid biosynthesis and stress responses).	jasmonic acid	115-128	mitogen-activated protein kinase 4	Brassica napus	34-40
31087367-5	2019	In contrast, transcripts encoding jasmonic acid (JA) pathway markers such as PR4 and MYC2 and transcripts with positive roles in defence against necrotrophs were less abundant following the 10-hr cold treatment.	jasmonic acid	34-47	pathogenesis-related 4	Arabidopsis thaliana	77-80
31505771-6	2019	Here we provide evidence that COI1-dependent JA signaling controls the expression of DAO1 and its closely related paralog DAO2.	jasmonic acid	45-47	RNI-like superfamily protein	Arabidopsis thaliana	30-34
31049793-8	2019	We hypothesize that de-regulated callose deposition in mlo3 genotypes might be the result of a subtle transient aberration of salicylic acid-jasmonic acid homeostasis during development.	jasmonic acid	141-154	Seven transmembrane MLO family protein	Arabidopsis thaliana	55-59
31311834-6	2019	We show that FHY3 and FAR1 repress plant growth through directly activating the expression of two atypical basic helix-loop-helix transcriptional cofactors, PHYTOCHROME RAPIDLY REGULATED1 (PAR1) and PAR2, and that this process is antagonized by a group of JASMONATE ZIM-DOMAIN proteins, key repressors of the jasmonic acid (JA) signaling pathway, through physical interactions.	jasmonic acid	309-322	far-red elongated hypocotyls 3	Arabidopsis thaliana	13-17
31311834-6	2019	We show that FHY3 and FAR1 repress plant growth through directly activating the expression of two atypical basic helix-loop-helix transcriptional cofactors, PHYTOCHROME RAPIDLY REGULATED1 (PAR1) and PAR2, and that this process is antagonized by a group of JASMONATE ZIM-DOMAIN proteins, key repressors of the jasmonic acid (JA) signaling pathway, through physical interactions.	jasmonic acid	309-322	FRS (FAR1 Related Sequences) transcription factor family	Arabidopsis thaliana	22-26
31311834-6	2019	We show that FHY3 and FAR1 repress plant growth through directly activating the expression of two atypical basic helix-loop-helix transcriptional cofactors, PHYTOCHROME RAPIDLY REGULATED1 (PAR1) and PAR2, and that this process is antagonized by a group of JASMONATE ZIM-DOMAIN proteins, key repressors of the jasmonic acid (JA) signaling pathway, through physical interactions.	jasmonic acid	309-322	phy rapidly regulated 1	Arabidopsis thaliana	157-187
31311834-6	2019	We show that FHY3 and FAR1 repress plant growth through directly activating the expression of two atypical basic helix-loop-helix transcriptional cofactors, PHYTOCHROME RAPIDLY REGULATED1 (PAR1) and PAR2, and that this process is antagonized by a group of JASMONATE ZIM-DOMAIN proteins, key repressors of the jasmonic acid (JA) signaling pathway, through physical interactions.	jasmonic acid	309-322	phy rapidly regulated 1	Arabidopsis thaliana	189-193
31311834-6	2019	We show that FHY3 and FAR1 repress plant growth through directly activating the expression of two atypical basic helix-loop-helix transcriptional cofactors, PHYTOCHROME RAPIDLY REGULATED1 (PAR1) and PAR2, and that this process is antagonized by a group of JASMONATE ZIM-DOMAIN proteins, key repressors of the jasmonic acid (JA) signaling pathway, through physical interactions.	jasmonic acid	256-258	far-red elongated hypocotyls 3	Arabidopsis thaliana	13-17
31311834-6	2019	We show that FHY3 and FAR1 repress plant growth through directly activating the expression of two atypical basic helix-loop-helix transcriptional cofactors, PHYTOCHROME RAPIDLY REGULATED1 (PAR1) and PAR2, and that this process is antagonized by a group of JASMONATE ZIM-DOMAIN proteins, key repressors of the jasmonic acid (JA) signaling pathway, through physical interactions.	jasmonic acid	256-258	FRS (FAR1 Related Sequences) transcription factor family	Arabidopsis thaliana	22-26
31311834-6	2019	We show that FHY3 and FAR1 repress plant growth through directly activating the expression of two atypical basic helix-loop-helix transcriptional cofactors, PHYTOCHROME RAPIDLY REGULATED1 (PAR1) and PAR2, and that this process is antagonized by a group of JASMONATE ZIM-DOMAIN proteins, key repressors of the jasmonic acid (JA) signaling pathway, through physical interactions.	jasmonic acid	256-258	phy rapidly regulated 1	Arabidopsis thaliana	157-187
31311834-6	2019	We show that FHY3 and FAR1 repress plant growth through directly activating the expression of two atypical basic helix-loop-helix transcriptional cofactors, PHYTOCHROME RAPIDLY REGULATED1 (PAR1) and PAR2, and that this process is antagonized by a group of JASMONATE ZIM-DOMAIN proteins, key repressors of the jasmonic acid (JA) signaling pathway, through physical interactions.	jasmonic acid	256-258	phy rapidly regulated 1	Arabidopsis thaliana	189-193
31311834-7	2019	Furthermore, we show that FHY3 interacts with MYC2, a key transcriptional regulator of JA responses, coordinately regulating JA-responsive defense gene expression.	jasmonic acid	87-89	far-red elongated hypocotyls 3	Arabidopsis thaliana	26-30
31311834-7	2019	Furthermore, we show that FHY3 interacts with MYC2, a key transcriptional regulator of JA responses, coordinately regulating JA-responsive defense gene expression.	jasmonic acid	87-89	Basic helix-loop-helix (bHLH) DNA-binding family protein	Arabidopsis thaliana	46-50
31311834-7	2019	Furthermore, we show that FHY3 interacts with MYC2, a key transcriptional regulator of JA responses, coordinately regulating JA-responsive defense gene expression.	jasmonic acid	125-127	far-red elongated hypocotyls 3	Arabidopsis thaliana	26-30
31311834-7	2019	Furthermore, we show that FHY3 interacts with MYC2, a key transcriptional regulator of JA responses, coordinately regulating JA-responsive defense gene expression.	jasmonic acid	125-127	Basic helix-loop-helix (bHLH) DNA-binding family protein	Arabidopsis thaliana	46-50
31087367-5	2019	In contrast, transcripts encoding jasmonic acid (JA) pathway markers such as PR4 and MYC2 and transcripts with positive roles in defence against necrotrophs were less abundant following the 10-hr cold treatment.	jasmonic acid	34-47	Basic helix-loop-helix (bHLH) DNA-binding family protein	Arabidopsis thaliana	85-89
31087367-5	2019	In contrast, transcripts encoding jasmonic acid (JA) pathway markers such as PR4 and MYC2 and transcripts with positive roles in defence against necrotrophs were less abundant following the 10-hr cold treatment.	jasmonic acid	49-51	pathogenesis-related 4	Arabidopsis thaliana	77-80
31087367-5	2019	In contrast, transcripts encoding jasmonic acid (JA) pathway markers such as PR4 and MYC2 and transcripts with positive roles in defence against necrotrophs were less abundant following the 10-hr cold treatment.	jasmonic acid	49-51	Basic helix-loop-helix (bHLH) DNA-binding family protein	Arabidopsis thaliana	85-89
31405001-1	2019	The phenotype of the tomato mutant jasmonate-insensitive1-1 (jai1-1) mutated in the JA-Ile co-receptor COI1 demonstrates JA function in flower development, since it is female-sterile.	jasmonic acid	35-44	Basic helix-loop-helix (bHLH) DNA-binding family protein	Arabidopsis thaliana	61-67
31405001-1	2019	The phenotype of the tomato mutant jasmonate-insensitive1-1 (jai1-1) mutated in the JA-Ile co-receptor COI1 demonstrates JA function in flower development, since it is female-sterile.	jasmonic acid	84-86	Basic helix-loop-helix (bHLH) DNA-binding family protein	Arabidopsis thaliana	61-67
31123095-0	2019	OXI1 and DAD Regulate Light-Induced Cell Death Antagonistically through Jasmonate and Salicylate Levels.	jasmonic acid	72-81	AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein	Arabidopsis thaliana	0-4
31211865-4	2019	Recently, hormone receptor components for auxin and jasmonic acid, respectively, have been identified as clients of the HSP90 chaperone system, suggesting a direct HSP90-dependent link to hormone signaling.	jasmonic acid	52-65	heat shock protein 90 alpha family class A member 1	Homo sapiens	120-125
31211865-4	2019	Recently, hormone receptor components for auxin and jasmonic acid, respectively, have been identified as clients of the HSP90 chaperone system, suggesting a direct HSP90-dependent link to hormone signaling.	jasmonic acid	52-65	heat shock protein 90 alpha family class A member 1	Homo sapiens	164-169
31136906-10	2019	The jasmonoyl-isoleucine level increased slightly after 10 h of SGR1 overexpression, and this increase became significant after 18 h. These observations suggest that jasmonate is produced through chlorophyll a degradation and affects the promotion of senescence.	jasmonic acid	166-175	non-yellowing 1	Arabidopsis thaliana	64-68
30880572-10	2019	Furthermore, JA also enhanced the activity of PAL, PPO, and CAT and the production of NO and H2O2.	jasmonic acid	13-15	polyphenol oxidase B, chloroplastic	Solanum lycopersicum	51-54
30976791-3	2019	Perception of insect attack locally and systemically elicits rapid synthesis of jasmonate, which is perceived by the F-box protein COI1 to further recruit JAZ repressors for ubiquitination and degradation, thereby releasing transcription factors that subsequently activate plant defense against insect attack.	jasmonic acid	80-89	zinc finger protein 346	Homo sapiens	155-158
30989238-0	2019	A Chimeric IDD4 Repressor Constitutively Induces Immunity in Arabidopsis via the Modulation of Salicylic Acid and Jasmonic Acid Homeostasis.	jasmonic acid	114-127	indeterminate(ID)-domain 4	Arabidopsis thaliana	11-15
31123095-5	2019	DAD1 or DAD2 overexpression decreased OXI1 expression, jasmonate levels, and sensitivity to photooxidative stress.	jasmonic acid	55-64	alpha/beta-Hydrolases superfamily protein	Arabidopsis thaliana	0-4
31123095-5	2019	DAD1 or DAD2 overexpression decreased OXI1 expression, jasmonate levels, and sensitivity to photooxidative stress.	jasmonic acid	55-64	Defender against death (DAD family) protein	Arabidopsis thaliana	8-12
31123095-8	2019	Treating plants with salicylate upregulated the DAD genes and downregulated OXI1 We conclude that OXI1 and DAD are antagonistic regulators of cell death through modulating jasmonate and salicylate levels.	jasmonic acid	172-181	AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein	Arabidopsis thaliana	98-102
31206553-6	2019	NSs directly interacts with MYC2, the jasmonate (JA) signaling master regulator and its two close homologs MYC3 and MYC4, to disable JA-mediated activation of terpene synthase genes.	jasmonic acid	49-51	transcription factor MYC2	Solanum lycopersicum	28-32
31234561-11	2019	In this mini-review, we aim to summarize how plants make use of the LOX2-AOS-AOC2 complex in chloroplasts to boost JA biosynthesis over volatile production and how this situation may change in plant communities during mass ingestion by insect pests.	jasmonic acid	115-117	lipoxygenase 2	Arabidopsis thaliana	68-72
31234561-11	2019	In this mini-review, we aim to summarize how plants make use of the LOX2-AOS-AOC2 complex in chloroplasts to boost JA biosynthesis over volatile production and how this situation may change in plant communities during mass ingestion by insect pests.	jasmonic acid	115-117	allene oxide cyclase 2	Arabidopsis thaliana	77-81
31150478-9	2019	A transcription factor with strong similarity to MYB47, known to be up-regulated by salt, drought, and jasmonic acid, but not cold in Arabidopsis, was essentially off in the freezing sensitive biotype CO46, but was cold-induced in the winter biotype Joelle.	jasmonic acid	103-116	myb domain protein 47	Arabidopsis thaliana	49-54
30753691-5	2019	Based on combined analyses of gene expression, JA biosynthesis and glycerolipid remodeling in wild-type Arabidopsis and in the coi1-16 mutant, JA signaling seems important in the determination of the basal levels of phosphatidylcholine, phosphatidic acid (PA), monogalactosyldiacylglycerol (MGDG) and digalactosyldiacylglycerol.	jasmonic acid	143-145	RNI-like superfamily protein	Arabidopsis thaliana	127-134
30838445-8	2019	Mutational analyses also indicate the plant wounding hormone, systemin, is not required, while jasmonic acid again appears to play a direct role in induction of the Ve1 gene.	jasmonic acid	95-108	verticillium wilt disease resistance protein	Solanum lycopersicum	165-168
31128710-7	2019	The interaction between MdHIR4 and AtJAZs proteins (AtJAZ3, AtJAZ4, and AtJAZ9) implied that MdHIR4 participated in the jasmonic acid (JA) signaling pathway.	jasmonic acid	120-133	jasmonate-zim-domain protein 3	Arabidopsis thaliana	52-58
31128710-7	2019	The interaction between MdHIR4 and AtJAZs proteins (AtJAZ3, AtJAZ4, and AtJAZ9) implied that MdHIR4 participated in the jasmonic acid (JA) signaling pathway.	jasmonic acid	120-133	jasmonate-zim-domain protein 4	Arabidopsis thaliana	60-66
31128710-7	2019	The interaction between MdHIR4 and AtJAZs proteins (AtJAZ3, AtJAZ4, and AtJAZ9) implied that MdHIR4 participated in the jasmonic acid (JA) signaling pathway.	jasmonic acid	120-133	TIFY domain/Divergent CCT motif family protein	Arabidopsis thaliana	72-78
31128710-7	2019	The interaction between MdHIR4 and AtJAZs proteins (AtJAZ3, AtJAZ4, and AtJAZ9) implied that MdHIR4 participated in the jasmonic acid (JA) signaling pathway.	jasmonic acid	37-39	jasmonate-zim-domain protein 3	Arabidopsis thaliana	52-58
31128710-7	2019	The interaction between MdHIR4 and AtJAZs proteins (AtJAZ3, AtJAZ4, and AtJAZ9) implied that MdHIR4 participated in the jasmonic acid (JA) signaling pathway.	jasmonic acid	37-39	jasmonate-zim-domain protein 4	Arabidopsis thaliana	60-66
31128710-7	2019	The interaction between MdHIR4 and AtJAZs proteins (AtJAZ3, AtJAZ4, and AtJAZ9) implied that MdHIR4 participated in the jasmonic acid (JA) signaling pathway.	jasmonic acid	37-39	TIFY domain/Divergent CCT motif family protein	Arabidopsis thaliana	72-78
30598046-11	2019	In addition, we demonstrated that MPK3/MPK6-induced GLIP1 expression is independent of ethylene and jasmonic acid, two important hormones in plant defense.	jasmonic acid	100-113	mitogen-activated protein kinase 3	Arabidopsis thaliana	34-38
30598046-11	2019	In addition, we demonstrated that MPK3/MPK6-induced GLIP1 expression is independent of ethylene and jasmonic acid, two important hormones in plant defense.	jasmonic acid	100-113	MAP kinase 6	Arabidopsis thaliana	39-43
31182849-5	2019	JA regulates the dynamic chromatin looping between JAEs and their promoters in a MED25-dependent manner, while MYC2 auto-regulates itself through JAEs.	jasmonic acid	0-2	phytochrome and flowering time regulatory protein (PFT1)	Arabidopsis thaliana	81-86
31182849-6	2019	Interestingly, the JAE of the MYC2 locus (named ME2) positively regulates MYC2 expression during short-term JA responses but negatively regulates it during constant JA responses.	jasmonic acid	19-21	Basic helix-loop-helix (bHLH) DNA-binding family protein	Arabidopsis thaliana	30-34
31182849-6	2019	Interestingly, the JAE of the MYC2 locus (named ME2) positively regulates MYC2 expression during short-term JA responses but negatively regulates it during constant JA responses.	jasmonic acid	19-21	Basic helix-loop-helix (bHLH) DNA-binding family protein	Arabidopsis thaliana	74-78
30690505-0	2019	Tissue Distribution and Specific Contribution of Arabidopsis FAD7 and FAD8 Plastid Desaturases to the JA- and ABA-Mediated Cold Stress or Defense Responses.	jasmonic acid	102-104	fatty acid desaturase 7	Arabidopsis thaliana	61-65
30894458-0	2019	Tomato MYB21 Acts in Ovules to Mediate Jasmonate-Regulated Fertility.	jasmonic acid	39-48	myb domain protein 21	Arabidopsis thaliana	7-12
30382422-5	2019	A similar effect was observed after cotyledon wounding, in which an increase of JA-inducible LOX2:GUS expression represses root growth, which correlates with the loss of TCS::GFP detection at the very root tip.	jasmonic acid	80-82	lipoxygenase 2	Arabidopsis thaliana	93-97
30690505-0	2019	Tissue Distribution and Specific Contribution of Arabidopsis FAD7 and FAD8 Plastid Desaturases to the JA- and ABA-Mediated Cold Stress or Defense Responses.	jasmonic acid	102-104	fatty acid desaturase 8	Arabidopsis thaliana	70-74
30690505-6	2019	AtFAD7 protein levels increased in response to wounding but not to jasmonate (JA), and decreased upon abscisic acid (ABA) treatment.	jasmonic acid	78-80	fatty acid desaturase 7	Arabidopsis thaliana	0-6
30690505-7	2019	Conversely, AtFAD8 protein levels increased upon cold or JA exposure and decreased at high temperatures, but did not respond to ABA or wounding.	jasmonic acid	57-59	fatty acid desaturase 8	Arabidopsis thaliana	12-18
30203844-6	2019	In addition, auxin and jasmonate (JA) are implicated in regulating cell division and cell expansion in stamens and pistils, and exogenous JA instead of auxin treatment can effectively rescue tomato stigma exsertion through regulating the JA/COI1 signalling pathway.	jasmonic acid	23-32	coronatine-insensitive 1	Solanum lycopersicum	241-245
30372534-6	2019	BIG deficiency promotes JA-dependent gene induction, increases JA production but restricts the accumulation of both ET and salicylic acid.	jasmonic acid	24-26	auxin transport protein (BIG)	Arabidopsis thaliana	0-3
30372534-7	2019	JA-induced anthocyanin accumulation and chlorophyll degradation are enhanced and stomatal immunity is impaired by BIG disruption.	jasmonic acid	0-2	auxin transport protein (BIG)	Arabidopsis thaliana	114-117
30372534-9	2019	Our results indicate that BIG negatively and positively regulate the MYC2 and ERF1 arms of the JA signalling pathway.	jasmonic acid	95-97	auxin transport protein (BIG)	Arabidopsis thaliana	26-29
30372534-9	2019	Our results indicate that BIG negatively and positively regulate the MYC2 and ERF1 arms of the JA signalling pathway.	jasmonic acid	95-97	Basic helix-loop-helix (bHLH) DNA-binding family protein	Arabidopsis thaliana	69-73
30372534-9	2019	Our results indicate that BIG negatively and positively regulate the MYC2 and ERF1 arms of the JA signalling pathway.	jasmonic acid	95-97	ethylene responsive element binding factor 1	Arabidopsis thaliana	78-82
30203844-6	2019	In addition, auxin and jasmonate (JA) are implicated in regulating cell division and cell expansion in stamens and pistils, and exogenous JA instead of auxin treatment can effectively rescue tomato stigma exsertion through regulating the JA/COI1 signalling pathway.	jasmonic acid	34-36	coronatine-insensitive 1	Solanum lycopersicum	241-245
31001304-5	2019	Among these JATs, AtJAT1/AtABCG16, has a dual localization in the plasma membrane and nuclear envelop and mediates the efflux of jasmonic acid (JA) across the plasma membrane and influx of JA-Ile into the nucleus.	jasmonic acid	129-142	ABC-2 type transporter family protein	Arabidopsis thaliana	25-33
31001304-5	2019	Among these JATs, AtJAT1/AtABCG16, has a dual localization in the plasma membrane and nuclear envelop and mediates the efflux of jasmonic acid (JA) across the plasma membrane and influx of JA-Ile into the nucleus.	jasmonic acid	12-14	ABC-2 type transporter family protein	Arabidopsis thaliana	25-33
30690555-6	2019	Biochemical experiments identified AOS as a constituent of complexes also containing lipoxygenase 2 (LOX2) and allene oxide cyclase (AOC), which catalyze consecutive steps in JA precursor biosynthesis, while excluding the concurrent HPL reaction.	jasmonic acid	175-177	lipoxygenase 2	Arabidopsis thaliana	85-99
30690555-6	2019	Biochemical experiments identified AOS as a constituent of complexes also containing lipoxygenase 2 (LOX2) and allene oxide cyclase (AOC), which catalyze consecutive steps in JA precursor biosynthesis, while excluding the concurrent HPL reaction.	jasmonic acid	175-177	lipoxygenase 2	Arabidopsis thaliana	101-105
30632760-4	2019	We showed an increase in pathogen resistance and suppression of jasmonic acid (JA) signaling in the BnMPK4 overexpressing (OE) plants.	jasmonic acid	64-77	mitogen-activated protein kinase 4	Brassica napus	100-106
30478481-4	2019	We used a NtQPT2 promoter-driven reporter gene to examine the cell type-specific and jasmonate-induced expression of this gene in transgenic tomato hairy roots.	jasmonic acid	85-94	nicotinate-nucleotide pyrophosphorylase [carboxylating], chloroplastic-like	Nicotiana tabacum	10-16
30632760-4	2019	We showed an increase in pathogen resistance and suppression of jasmonic acid (JA) signaling in the BnMPK4 overexpressing (OE) plants.	jasmonic acid	79-81	mitogen-activated protein kinase 4	Brassica napus	100-106
30610166-0	2019	MYC2 Regulates the Termination of Jasmonate Signaling via an Autoregulatory Negative Feedback Loop.	jasmonic acid	34-43	transcription factor MYC2	Solanum lycopersicum	0-4
30808959-10	2019	The transcription of the NtCOI1 gene, a key gene in the JA pathway, was significantly higher in both the inoculated and systemic leaves of the AHK-treated plants compared to the control.	jasmonic acid	56-58	coronatine-insensitive protein 1-like	Nicotiana tabacum	25-31
30267434-0	2019	Jasmonic acid-inducible TSA1 facilitates ER body formation.	jasmonic acid	0-13	tryptophan synthase alpha chain	Arabidopsis thaliana	24-28
30670655-6	2019	AHL10 S314 phosphorylation was critical for restriction of plant growth under low-water potential stress and for regulation of jasmonic acid and auxin-related gene expression as well as expression of developmental regulators including Shootmeristemless These genes were also misregulated in hai1-2 AHL10 S314 phosphorylation was required for AHL10 complexes to form foci within the nucleoplasm, suggesting that S314 phosphorylation may control AHL10 association with the nuclear matrix or with other transcriptional regulators.	jasmonic acid	127-140	AT hook motif DNA-binding family protein	Arabidopsis thaliana	0-5
30191311-6	2019	GO and KEGG enrichment analyses showed that plant-pathogen interaction, the MAPK pathway, and the pathways related to JA and ET biosynthesis were affected by miR482b in tomato.	jasmonic acid	118-120	MIR482b	Solanum lycopersicum	158-165
31058576-8	2019	Further analysis showed that raptor1b seeds maintained higher levels of indole-3-acetic acid and jasmonates, namely jasmonic acid (JA) and 12-oxo-phytodienoic acid, even after stratification.	jasmonic acid	97-107	Regulatory-associated protein of TOR 1	Arabidopsis thaliana	29-37
30610166-4	2019	Although much has been learned about the MYC2-dependent transcriptional activation of JA-responsive genes, relatively less studied is the termination of JA-mediated transcriptional responses and the underlying mechanisms.	jasmonic acid	86-88	transcription factor MYC2	Solanum lycopersicum	41-45
31058576-8	2019	Further analysis showed that raptor1b seeds maintained higher levels of indole-3-acetic acid and jasmonates, namely jasmonic acid (JA) and 12-oxo-phytodienoic acid, even after stratification.	jasmonic acid	116-129	Regulatory-associated protein of TOR 1	Arabidopsis thaliana	29-37
31058576-8	2019	Further analysis showed that raptor1b seeds maintained higher levels of indole-3-acetic acid and jasmonates, namely jasmonic acid (JA) and 12-oxo-phytodienoic acid, even after stratification.	jasmonic acid	131-133	Regulatory-associated protein of TOR 1	Arabidopsis thaliana	29-37
30610166-5	2019	Here, we report an unexpected function of MYC2 in regulating the termination of JA signaling through activating a small group of JA-inducible bHLH proteins, termed MYC2-TARGETED BHLH1 (MTB1), MTB2, and MTB3.	jasmonic acid	80-82	transcription factor MYC2	Solanum lycopersicum	42-46
31187685-7	2019	MEK1/2 inhibitor PD98059 decreased JA-induced AsA/DHA ratio and the transcript levels and the activities of ascorbate peroxidase (APX), glutathione reductase (GR), monodehydroascorbate reductase (MDHAR), dehydroascorbate reductase (DHAR) and L-galactono-1,4-lactone dehydrogenase (GalLDH) in WT.	jasmonic acid	35-37	MAP kinase/ ERK kinase 1	Arabidopsis thaliana	0-6
31187685-7	2019	MEK1/2 inhibitor PD98059 decreased JA-induced AsA/DHA ratio and the transcript levels and the activities of ascorbate peroxidase (APX), glutathione reductase (GR), monodehydroascorbate reductase (MDHAR), dehydroascorbate reductase (DHAR) and L-galactono-1,4-lactone dehydrogenase (GalLDH) in WT.	jasmonic acid	35-37	peroxidase	Arabidopsis thaliana	118-128
31187685-7	2019	MEK1/2 inhibitor PD98059 decreased JA-induced AsA/DHA ratio and the transcript levels and the activities of ascorbate peroxidase (APX), glutathione reductase (GR), monodehydroascorbate reductase (MDHAR), dehydroascorbate reductase (DHAR) and L-galactono-1,4-lactone dehydrogenase (GalLDH) in WT.	jasmonic acid	35-37	glutathione reductase	Arabidopsis thaliana	136-157
31187685-7	2019	MEK1/2 inhibitor PD98059 decreased JA-induced AsA/DHA ratio and the transcript levels and the activities of ascorbate peroxidase (APX), glutathione reductase (GR), monodehydroascorbate reductase (MDHAR), dehydroascorbate reductase (DHAR) and L-galactono-1,4-lactone dehydrogenase (GalLDH) in WT.	jasmonic acid	35-37	glutathione reductase	Arabidopsis thaliana	159-161
31187685-7	2019	MEK1/2 inhibitor PD98059 decreased JA-induced AsA/DHA ratio and the transcript levels and the activities of ascorbate peroxidase (APX), glutathione reductase (GR), monodehydroascorbate reductase (MDHAR), dehydroascorbate reductase (DHAR) and L-galactono-1,4-lactone dehydrogenase (GalLDH) in WT.	jasmonic acid	35-37	monodehydroascorbate reductase	Arabidopsis thaliana	164-194
31094274-5	2019	The enhanced shoot regeneration was diminished in coi1-1 mutants, indicating that JA-pretreated explants potentiate shoot regeneration in a COI1-dependent manner.	jasmonic acid	82-84	RNI-like superfamily protein	Arabidopsis thaliana	50-54
31094274-5	2019	The enhanced shoot regeneration was diminished in coi1-1 mutants, indicating that JA-pretreated explants potentiate shoot regeneration in a COI1-dependent manner.	jasmonic acid	82-84	RNI-like superfamily protein	Arabidopsis thaliana	140-144
31187685-0	2019	Jasmonic acid-induced hydrogen sulfide activates MEK1/2 in regulating the redox state of ascorbate in Arabidopsis thaliana leaves.	jasmonic acid	0-13	MAP kinase/ ERK kinase 1	Arabidopsis thaliana	49-55
31187685-7	2019	MEK1/2 inhibitor PD98059 decreased JA-induced AsA/DHA ratio and the transcript levels and the activities of ascorbate peroxidase (APX), glutathione reductase (GR), monodehydroascorbate reductase (MDHAR), dehydroascorbate reductase (DHAR) and L-galactono-1,4-lactone dehydrogenase (GalLDH) in WT.	jasmonic acid	35-37	monodehydroascorbate reductase	Arabidopsis thaliana	196-201
30610166-5	2019	Here, we report an unexpected function of MYC2 in regulating the termination of JA signaling through activating a small group of JA-inducible bHLH proteins, termed MYC2-TARGETED BHLH1 (MTB1), MTB2, and MTB3.	jasmonic acid	80-82	transcription factor MYC2	Solanum lycopersicum	164-168
31187685-11	2019	Our results suggested that H2S activated MEK1/2 in JA-regulated AsA/DHA ratio in A. thaliana leaves through enzymes in ascorbate metabolism.	jasmonic acid	51-53	MAP kinase/ ERK kinase 1	Arabidopsis thaliana	41-47
30610166-5	2019	Here, we report an unexpected function of MYC2 in regulating the termination of JA signaling through activating a small group of JA-inducible bHLH proteins, termed MYC2-TARGETED BHLH1 (MTB1), MTB2, and MTB3.	jasmonic acid	80-82	basic helix-loop-helix	Solanum lycopersicum	178-183
30610166-5	2019	Here, we report an unexpected function of MYC2 in regulating the termination of JA signaling through activating a small group of JA-inducible bHLH proteins, termed MYC2-TARGETED BHLH1 (MTB1), MTB2, and MTB3.	jasmonic acid	129-131	transcription factor MYC2	Solanum lycopersicum	42-46
31187685-1	2019	In this paper, we investigated the relationship between hydrogen sulfide (H2S) and mitogen-activated protein kinase kinase (MEK1/2) in jasmonic acid (JA)-regulated the redox state of ascorbate in the leaves of Arabidopsis thaliana.	jasmonic acid	135-148	MAP kinase/ ERK kinase 1	Arabidopsis thaliana	124-130
30610166-5	2019	Here, we report an unexpected function of MYC2 in regulating the termination of JA signaling through activating a small group of JA-inducible bHLH proteins, termed MYC2-TARGETED BHLH1 (MTB1), MTB2, and MTB3.	jasmonic acid	129-131	transcription factor MYC2	Solanum lycopersicum	164-168
31187685-1	2019	In this paper, we investigated the relationship between hydrogen sulfide (H2S) and mitogen-activated protein kinase kinase (MEK1/2) in jasmonic acid (JA)-regulated the redox state of ascorbate in the leaves of Arabidopsis thaliana.	jasmonic acid	150-152	MAP kinase/ ERK kinase 1	Arabidopsis thaliana	124-130
31187685-2	2019	The results showed that JA significantly enhanced the phosphorylation level of MEK1/2, the production of endogenous H2S and the ratio of reduced ascorbate (AsA) to dehydroascorbate (DHA) (AsA/DHA) in wild type of A. thaliana (WT).	jasmonic acid	24-26	MAP kinase/ ERK kinase 1	Arabidopsis thaliana	79-85
31264505-0	2019	Jasmonic Acid Modulates Xylem Development by Controlling Expression of PIN-FORMED 7.	jasmonic acid	0-13	Auxin efflux carrier family protein	Arabidopsis thaliana	71-83
30610166-5	2019	Here, we report an unexpected function of MYC2 in regulating the termination of JA signaling through activating a small group of JA-inducible bHLH proteins, termed MYC2-TARGETED BHLH1 (MTB1), MTB2, and MTB3.	jasmonic acid	129-131	basic helix-loop-helix	Solanum lycopersicum	178-183
31264505-5	2019	Here, we characterized the expression of PIN3 and PIN7 in JA-treated Arabidopsis plants.	jasmonic acid	58-60	Auxin efflux carrier family protein	Arabidopsis thaliana	41-45
31187685-4	2019	H2S scavenger hypotaurine (HT) markedly reduced JA-induced the phosphorylation level of MEK1/2, AsA/DHA ratio and the production of endogenous H2S in WT.	jasmonic acid	48-50	MAP kinase/ ERK kinase 1	Arabidopsis thaliana	88-94
30610166-6	2019	MTB proteins negatively regulate JA-mediated transcriptional responses via their antagonistic effects on the functionality of the MYC2-MED25 transcriptional activation complex.	jasmonic acid	33-35	transcription factor MYC2	Solanum lycopersicum	130-134
31264505-5	2019	Here, we characterized the expression of PIN3 and PIN7 in JA-treated Arabidopsis plants.	jasmonic acid	58-60	Auxin efflux carrier family protein	Arabidopsis thaliana	50-54
31264505-6	2019	PIN3 expression was not altered in response to JA; by contrast, PIN7 expression was reduced by JA, which suggested that PIN7 is involved in JA-mediated xylem development.	jasmonic acid	95-97	Auxin efflux carrier family protein	Arabidopsis thaliana	64-68
30610166-8	2019	Therefore, MYC2 and MTB proteins form an autoregulatory negative feedback circuit to terminate JA signaling in a highly organized manner.	jasmonic acid	95-97	transcription factor MYC2	Solanum lycopersicum	11-15
31264505-6	2019	PIN3 expression was not altered in response to JA; by contrast, PIN7 expression was reduced by JA, which suggested that PIN7 is involved in JA-mediated xylem development.	jasmonic acid	95-97	Auxin efflux carrier family protein	Arabidopsis thaliana	120-124
30165674-8	2018	Mutations in two putative catalytic residues in the DAD1-like lipase domain abolished the ability of RipAL to induce JA production and suppress SA signaling.	jasmonic acid	117-119	alpha/beta-Hydrolases superfamily protein	Arabidopsis thaliana	52-56
31264505-7	2019	Indeed, overexpressing PIN7 suppressed the formation of extra xylem in response to JA.	jasmonic acid	83-85	Auxin efflux carrier family protein	Arabidopsis thaliana	23-27
31264505-8	2019	Based on these results, we propose that JA mediates xylem development by controlling polar auxin transport with PIN7 critically involved in this process.	jasmonic acid	40-42	Auxin efflux carrier family protein	Arabidopsis thaliana	112-116
31382813-4	2019	In the current manuscript we show that mutation of Arabidopsis RAPTOR1B leads to significantly decreased levels of free jasmonic acid (JA), jasmonoyl-(L)-isoleucine (JA-Ile) as well as its biosynthetic precursor 12-oxo-phytodienoic acid (OPDA).	jasmonic acid	120-133	Regulatory-associated protein of TOR 1	Arabidopsis thaliana	63-71
31382813-4	2019	In the current manuscript we show that mutation of Arabidopsis RAPTOR1B leads to significantly decreased levels of free jasmonic acid (JA), jasmonoyl-(L)-isoleucine (JA-Ile) as well as its biosynthetic precursor 12-oxo-phytodienoic acid (OPDA).	jasmonic acid	135-137	Regulatory-associated protein of TOR 1	Arabidopsis thaliana	63-71
31382813-5	2019	Although raptor1b leaves showed decreased basic JA level compared to WT, the mutant responded substantially to wounding stress by producing the same amount of JA as WT.	jasmonic acid	48-50	Regulatory-associated protein of TOR 1	Arabidopsis thaliana	9-17
31382813-7	2019	AZD-treated WT and raptor1b leaves accumulated high JA levels.	jasmonic acid	52-54	Regulatory-associated protein of TOR 1	Arabidopsis thaliana	19-27
29924303-9	2018	In addition, COI1 overexpression positively affects the availability of metabolites such as beta-alanine, threonic acid, putrescine, glucose and myo-inositol, thereby providing a connection between JA-inhibited growth and stress responses.	jasmonic acid	198-200	RNI-like superfamily protein	Arabidopsis thaliana	13-17
30544968-4	2018	Transgenic wheat plants with high AtOPR3 expression levels have increased basal levels of JA, and up-regulated expression of ALLENE OXIDE SYNTHASE, a jasmonate biosynthesis pathway gene that is known to be regulated by a positive feedback loop that maintains and boosts JA levels.	jasmonic acid	90-92	oxophytodienoate-reductase 3	Arabidopsis thaliana	34-40
30544968-4	2018	Transgenic wheat plants with high AtOPR3 expression levels have increased basal levels of JA, and up-regulated expression of ALLENE OXIDE SYNTHASE, a jasmonate biosynthesis pathway gene that is known to be regulated by a positive feedback loop that maintains and boosts JA levels.	jasmonic acid	270-272	oxophytodienoate-reductase 3	Arabidopsis thaliana	34-40
30544968-4	2018	Transgenic wheat plants with high AtOPR3 expression levels have increased basal levels of JA, and up-regulated expression of ALLENE OXIDE SYNTHASE, a jasmonate biosynthesis pathway gene that is known to be regulated by a positive feedback loop that maintains and boosts JA levels.	jasmonic acid	270-272	allene oxide synthase 2	Triticum aestivum	125-146
30392908-3	2018	Genetic and biochemical experiments revealed that exogenous jasmonate could attenuate the cold sensitivity of glr1.2 and glr1.3 mutants, and the overexpression of GLR1.2 or GLR1.3 enhanced cold tolerance by increasing endogenous jasmonate levels under cold stress.	jasmonic acid	60-69	Glutamate receptor family protein	Arabidopsis thaliana	110-116
30392908-3	2018	Genetic and biochemical experiments revealed that exogenous jasmonate could attenuate the cold sensitivity of glr1.2 and glr1.3 mutants, and the overexpression of GLR1.2 or GLR1.3 enhanced cold tolerance by increasing endogenous jasmonate levels under cold stress.	jasmonic acid	60-69	glutamate receptor 1.3	Arabidopsis thaliana	121-127
30392908-3	2018	Genetic and biochemical experiments revealed that exogenous jasmonate could attenuate the cold sensitivity of glr1.2 and glr1.3 mutants, and the overexpression of GLR1.2 or GLR1.3 enhanced cold tolerance by increasing endogenous jasmonate levels under cold stress.	jasmonic acid	229-238	Glutamate receptor family protein	Arabidopsis thaliana	163-169
30392908-3	2018	Genetic and biochemical experiments revealed that exogenous jasmonate could attenuate the cold sensitivity of glr1.2 and glr1.3 mutants, and the overexpression of GLR1.2 or GLR1.3 enhanced cold tolerance by increasing endogenous jasmonate levels under cold stress.	jasmonic acid	229-238	glutamate receptor 1.1	Arabidopsis thaliana	163-167
30392908-6	2018	Together, our findings suggest that AtGLR1.2 and 1.3 positively enhance cold tolerance in Arabidopsis by activating endogenous jasmonate accumulation and subsequently promoting the downstream CBF/DREB1 cold response pathway during cold stress.	jasmonic acid	127-136	glutamate receptor 1.1	Arabidopsis thaliana	36-42
30240931-0	2018	Foliar sprays of salicylic acid and jasmonic acid stimulate H+-ATPase activity of tonoplast, nutrient uptake and salt tolerance of soybean.	jasmonic acid	36-49	plasma membrane ATPase 4	Glycine max	60-69
30240931-4	2018	Treatment of plants with SA, JA and SA+JA improved H+-ATPase activity and ATP content in root cells.	jasmonic acid	29-31	plasma membrane ATPase 4	Glycine max	51-60
30240931-4	2018	Treatment of plants with SA, JA and SA+JA improved H+-ATPase activity and ATP content in root cells.	jasmonic acid	39-41	plasma membrane ATPase 4	Glycine max	51-60
30116887-8	2018	Ni tolerance in the presence of GA3 was attributed to peroxisomal reactions that stimulated the synthesis of endogenous JA.	jasmonic acid	120-122	succinyl-CoA:glutarate-CoA transferase	Homo sapiens	32-35
30510560-2	2018	Octadecanoid-responsive arabidopsis 59 (ORA59) is an ethylene response factor (ERF) transcription factor and has been suggested to integrate ethylene and jasmonic acid signaling and regulate resistance to necrotrophic pathogens.	jasmonic acid	154-167	octadecanoid-responsive AP2/ERF 59	Arabidopsis thaliana	40-45
30466588-8	2018	TaNAC6s might be induced by JA and then feedback regulate the JA pathway leading to improved resistance to Bgt.	jasmonic acid	28-30	NAC domain-containing protein 48	Triticum aestivum	0-6
30466588-8	2018	TaNAC6s might be induced by JA and then feedback regulate the JA pathway leading to improved resistance to Bgt.	jasmonic acid	62-64	NAC domain-containing protein 48	Triticum aestivum	0-6
30092285-2	2018	The endogenous active JA molecule (+)-7-iso-JA-L-Ile (JA-Ile) and its analog coronatine trigger formation of a complex with the F-box protein COI1 and JAZ repressors to induce degradation of the JAZs through the 26S proteasome pathway in a COI1-dependent manner.	jasmonic acid	22-24	RNI-like superfamily protein	Arabidopsis thaliana	142-146
30124925-0	2018	Phytochrome A and B Negatively Regulate Salt Stress Tolerance of Nicotiana tobacum via ABA-Jasmonic Acid Synergistic Cross-Talk.	jasmonic acid	91-104	phytochrome B	Nicotiana tabacum	0-19
30092285-2	2018	The endogenous active JA molecule (+)-7-iso-JA-L-Ile (JA-Ile) and its analog coronatine trigger formation of a complex with the F-box protein COI1 and JAZ repressors to induce degradation of the JAZs through the 26S proteasome pathway in a COI1-dependent manner.	jasmonic acid	22-24	RNI-like superfamily protein	Arabidopsis thaliana	240-244
30092285-3	2018	To reveal the formation process of COI1-JA-JAZ ternary complex, we employed several biochemical approaches to examine how JA is dynamically perceived.	jasmonic acid	40-42	RNI-like superfamily protein	Arabidopsis thaliana	35-39
29960107-8	2018	Moreover, we found that MYC2 and JAR1, two critical components of the JA signaling pathway, play critical roles in mediating JA suppression of the expression of FIT and Ib bHLH genes, whereas they differentially modulate the expression of bHLH18, bHLH19, bHLH20, and bHLH25 to regulate FIT accumulation under iron deficiency.	jasmonic acid	70-72	Basic helix-loop-helix (bHLH) DNA-binding family protein	Arabidopsis thaliana	24-28
30243225-3	2018	JA-Ile promotes binding of JAZ repressor to COI1 protein in Arabidopsis to activate jasmonate (JA)-dependent responses.	jasmonic acid	0-2	RNI-like superfamily protein	Arabidopsis thaliana	44-48
30243225-3	2018	JA-Ile promotes binding of JAZ repressor to COI1 protein in Arabidopsis to activate jasmonate (JA)-dependent responses.	jasmonic acid	84-93	RNI-like superfamily protein	Arabidopsis thaliana	44-48
30243225-3	2018	JA-Ile promotes binding of JAZ repressor to COI1 protein in Arabidopsis to activate jasmonate (JA)-dependent responses.	jasmonic acid	27-29	RNI-like superfamily protein	Arabidopsis thaliana	44-48
30150302-8	2018	GhCPK33 phosphorylates GhOPR3 at threonine-246, leading to decreased stability of GhOPR3, which consequently limits JA biosynthesis.	jasmonic acid	116-118	12-oxophytodienoate reductase 3-like	Gossypium hirsutum	23-29
30150302-8	2018	GhCPK33 phosphorylates GhOPR3 at threonine-246, leading to decreased stability of GhOPR3, which consequently limits JA biosynthesis.	jasmonic acid	116-118	12-oxophytodienoate reductase 3-like	Gossypium hirsutum	82-88
29960107-4	2018	In this study, we found that JA negatively modulates iron uptake by downregulating the expression of FIT (bHLH29), bHLH38, bHLH39, bHLH100, and bHLH101 and promoting the degradation of FIT protein, a key regulator of iron uptake in Arabidopsis.	jasmonic acid	29-31	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	Arabidopsis thaliana	115-121
29960107-4	2018	In this study, we found that JA negatively modulates iron uptake by downregulating the expression of FIT (bHLH29), bHLH38, bHLH39, bHLH100, and bHLH101 and promoting the degradation of FIT protein, a key regulator of iron uptake in Arabidopsis.	jasmonic acid	29-31	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	Arabidopsis thaliana	123-129
29960107-4	2018	In this study, we found that JA negatively modulates iron uptake by downregulating the expression of FIT (bHLH29), bHLH38, bHLH39, bHLH100, and bHLH101 and promoting the degradation of FIT protein, a key regulator of iron uptake in Arabidopsis.	jasmonic acid	29-31	basic helix-loop-helix protein 100	Arabidopsis thaliana	131-138
29960107-8	2018	Moreover, we found that MYC2 and JAR1, two critical components of the JA signaling pathway, play critical roles in mediating JA suppression of the expression of FIT and Ib bHLH genes, whereas they differentially modulate the expression of bHLH18, bHLH19, bHLH20, and bHLH25 to regulate FIT accumulation under iron deficiency.	jasmonic acid	70-72	Auxin-responsive GH3 family protein	Arabidopsis thaliana	33-37
29960107-4	2018	In this study, we found that JA negatively modulates iron uptake by downregulating the expression of FIT (bHLH29), bHLH38, bHLH39, bHLH100, and bHLH101 and promoting the degradation of FIT protein, a key regulator of iron uptake in Arabidopsis.	jasmonic acid	29-31	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	Arabidopsis thaliana	144-151
30146750-2	2018	METHOD: Cyclo-oxygenase (COX)-2:COX-1 selectivity assay was carried out by plating isolated peripheral blood mononuclear cells in culture medium with specific SBL fractions: crude extract (J), ethyl-acetate (JE) and aqueous (JA); secondary compounds from JE (JE5, JE6, JE7 and JE8); purified (P9) and semi-purified (P8) compounds from JE5 at 5-200 mug/mL for 1 hour.	jasmonic acid	225-227	cox2	Sorghum bicolor	8-31
29660236-5	2018	In addition to the reported defence function of ZmLOX12, we showed that lox4 and lox5 mutants were more susceptible to F. verticillioides and possessed decreased jasmonate levels during infection, suggesting that these genes are essential for jasmonic acid (JA)-mediated defence.	jasmonic acid	162-171	linoleate 9S-lipoxygenase4	Zea mays	72-76
29660236-5	2018	In addition to the reported defence function of ZmLOX12, we showed that lox4 and lox5 mutants were more susceptible to F. verticillioides and possessed decreased jasmonate levels during infection, suggesting that these genes are essential for jasmonic acid (JA)-mediated defence.	jasmonic acid	162-171	linoleate 9S-lipoxygenase5	Zea mays	81-85
29660236-5	2018	In addition to the reported defence function of ZmLOX12, we showed that lox4 and lox5 mutants were more susceptible to F. verticillioides and possessed decreased jasmonate levels during infection, suggesting that these genes are essential for jasmonic acid (JA)-mediated defence.	jasmonic acid	243-256	linoleate 9S-lipoxygenase4	Zea mays	72-76
29660236-5	2018	In addition to the reported defence function of ZmLOX12, we showed that lox4 and lox5 mutants were more susceptible to F. verticillioides and possessed decreased jasmonate levels during infection, suggesting that these genes are essential for jasmonic acid (JA)-mediated defence.	jasmonic acid	243-256	linoleate 9S-lipoxygenase5	Zea mays	81-85
29660236-5	2018	In addition to the reported defence function of ZmLOX12, we showed that lox4 and lox5 mutants were more susceptible to F. verticillioides and possessed decreased jasmonate levels during infection, suggesting that these genes are essential for jasmonic acid (JA)-mediated defence.	jasmonic acid	258-260	linoleate 9S-lipoxygenase4	Zea mays	72-76
29660236-5	2018	In addition to the reported defence function of ZmLOX12, we showed that lox4 and lox5 mutants were more susceptible to F. verticillioides and possessed decreased jasmonate levels during infection, suggesting that these genes are essential for jasmonic acid (JA)-mediated defence.	jasmonic acid	258-260	linoleate 9S-lipoxygenase5	Zea mays	81-85
30104405-8	2018	Acting together, EIN3/EIL1 and PIFs alleviate the negative effects of jasmonate/light and facilitate the positive effects of ethylene/gibberellins.	jasmonic acid	70-79	Ethylene insensitive 3 family protein	Arabidopsis thaliana	17-26
30115737-6	2018	The ots1 ots2 double mutants accumulate SUMOylated and non-SUMOylated JAZ repressor proteins but show no change in endogenous JA levels compared with wild-type plants.	jasmonic acid	70-72	UB-like protease 1D	Arabidopsis thaliana	4-8
30115737-6	2018	The ots1 ots2 double mutants accumulate SUMOylated and non-SUMOylated JAZ repressor proteins but show no change in endogenous JA levels compared with wild-type plants.	jasmonic acid	70-72	Cysteine proteinases superfamily protein	Arabidopsis thaliana	9-13
30115737-7	2018	SUMO1-conjugated JAZ proteins bind to COI1 independently of the JA mimic coronatine.	jasmonic acid	17-19	small ubiquitin-like modifier 1	Arabidopsis thaliana	0-5
30115737-7	2018	SUMO1-conjugated JAZ proteins bind to COI1 independently of the JA mimic coronatine.	jasmonic acid	17-19	RNI-like superfamily protein	Arabidopsis thaliana	38-42
30147704-7	2018	In addition, these plants with lower TCP10 levels showed decreased expression level of the jasmonic acid (JA) biosynthetic gene: LOX2.	jasmonic acid	91-104	lipoxygenase 2	Arabidopsis thaliana	129-133
30147704-7	2018	In addition, these plants with lower TCP10 levels showed decreased expression level of the jasmonic acid (JA) biosynthetic gene: LOX2.	jasmonic acid	106-108	lipoxygenase 2	Arabidopsis thaliana	129-133
30147704-8	2018	The transcription of LOX2 by TCPs has been demonstrated for Arabidopsis and in several plants LOX2 level and JA content have been associate with TCP levels.	jasmonic acid	109-111	lipoxygenase 2	Arabidopsis thaliana	21-25
30075823-9	2018	Our findings build on previously published work and suggest that JA perception plays a role in immune responses triggered by AtPep1.	jasmonic acid	65-67	precursor of peptide 1	Arabidopsis thaliana	125-131
30189848-14	2018	RESULTS: MeJA, at 0.01 muM, enhances AR-formation, when combined with IBA + Kin, and the response of the early-JA-biosynthesis mutant dde2-2 and the JA-signalling mutant coi1-16 confirmed this result.	jasmonic acid	11-13	RNI-like superfamily protein	Arabidopsis thaliana	170-174
30092129-4	2018	Furthermore, we detected the expressions of salicylic acid (SA) and jasmonic acid (JA) signaling-related genes and found that knockout of SlMAPK3 enhanced the expressions of SlPR1, SlPAD4 and SlEDS1, whereas reduced the expressions of SlLoxC, SlPI I and SlPI II and enhanced the expressions of SlJAZ1 and SlMYC2.	jasmonic acid	68-81	mitogen-activated protein kinase 3	Solanum lycopersicum	138-145
30092129-4	2018	Furthermore, we detected the expressions of salicylic acid (SA) and jasmonic acid (JA) signaling-related genes and found that knockout of SlMAPK3 enhanced the expressions of SlPR1, SlPAD4 and SlEDS1, whereas reduced the expressions of SlLoxC, SlPI I and SlPI II and enhanced the expressions of SlJAZ1 and SlMYC2.	jasmonic acid	83-85	mitogen-activated protein kinase 3	Solanum lycopersicum	138-145
30092129-5	2018	We postulate that SlMAPK3 plays a positive role in tomato plant resistance to B. cinerea through regulating ROS accumulation and SA and JA defense signaling pathways.	jasmonic acid	136-138	mitogen-activated protein kinase 3	Solanum lycopersicum	18-25
29842929-4	2018	Here, we present genetic and molecular evidence that in Arabidopsis an EDS1 complex with its partner PAD4 inhibits MYC2, a master regulator of SA-antagonizing jasmonic acid (JA) hormone pathways.	jasmonic acid	159-172	alpha/beta-Hydrolases superfamily protein	Arabidopsis thaliana	71-75
29842929-4	2018	Here, we present genetic and molecular evidence that in Arabidopsis an EDS1 complex with its partner PAD4 inhibits MYC2, a master regulator of SA-antagonizing jasmonic acid (JA) hormone pathways.	jasmonic acid	159-172	alpha/beta-Hydrolases superfamily protein	Arabidopsis thaliana	101-105
29842929-4	2018	Here, we present genetic and molecular evidence that in Arabidopsis an EDS1 complex with its partner PAD4 inhibits MYC2, a master regulator of SA-antagonizing jasmonic acid (JA) hormone pathways.	jasmonic acid	159-172	Basic helix-loop-helix (bHLH) DNA-binding family protein	Arabidopsis thaliana	115-119
29842929-4	2018	Here, we present genetic and molecular evidence that in Arabidopsis an EDS1 complex with its partner PAD4 inhibits MYC2, a master regulator of SA-antagonizing jasmonic acid (JA) hormone pathways.	jasmonic acid	174-176	alpha/beta-Hydrolases superfamily protein	Arabidopsis thaliana	71-75
29842929-4	2018	Here, we present genetic and molecular evidence that in Arabidopsis an EDS1 complex with its partner PAD4 inhibits MYC2, a master regulator of SA-antagonizing jasmonic acid (JA) hormone pathways.	jasmonic acid	174-176	alpha/beta-Hydrolases superfamily protein	Arabidopsis thaliana	101-105
29842929-4	2018	Here, we present genetic and molecular evidence that in Arabidopsis an EDS1 complex with its partner PAD4 inhibits MYC2, a master regulator of SA-antagonizing jasmonic acid (JA) hormone pathways.	jasmonic acid	174-176	Basic helix-loop-helix (bHLH) DNA-binding family protein	Arabidopsis thaliana	115-119
30146750-2	2018	METHOD: Cyclo-oxygenase (COX)-2:COX-1 selectivity assay was carried out by plating isolated peripheral blood mononuclear cells in culture medium with specific SBL fractions: crude extract (J), ethyl-acetate (JE) and aqueous (JA); secondary compounds from JE (JE5, JE6, JE7 and JE8); purified (P9) and semi-purified (P8) compounds from JE5 at 5-200 mug/mL for 1 hour.	jasmonic acid	225-227	cox1	Sorghum bicolor	32-37
29752755-0	2018	Jasmonic acid/ethylene signaling coordinates hydroxycinnamic acid amides biosynthesis through ORA59 transcription factor.	jasmonic acid	0-13	octadecanoid-responsive AP2/ERF 59	Arabidopsis thaliana	94-99
29752755-4	2018	Yeast one-hybrid screening using the AtACT promoter as bait isolated the key positive regulator ORA59 that is involved in jasmonic acid/ethylene (JA/ET)-mediated plant defense responses.	jasmonic acid	122-135	octadecanoid-responsive AP2/ERF 59	Arabidopsis thaliana	96-101
29752755-4	2018	Yeast one-hybrid screening using the AtACT promoter as bait isolated the key positive regulator ORA59 that is involved in jasmonic acid/ethylene (JA/ET)-mediated plant defense responses.	jasmonic acid	146-148	octadecanoid-responsive AP2/ERF 59	Arabidopsis thaliana	96-101
29934297-4	2018	Here, we report that jasmonic acid (JA) functions as a lateral root (LR)-preferential auxin inhibitor in Arabidopsis (Arabidopsis thaliana) in a manner that is independent of the JA receptor, CORONATINE INSENSITIVE1 (COI1).	jasmonic acid	21-34	RNI-like superfamily protein	Arabidopsis thaliana	217-221
29751251-8	2018	In endophyte-soybean interaction, CHS1 association significantly increased plant growth and attenuated the NaCl stress by down regulating ABA and JA synthesis.	jasmonic acid	146-148	chalcone synthase 1	Glycine max	34-38
29934297-4	2018	Here, we report that jasmonic acid (JA) functions as a lateral root (LR)-preferential auxin inhibitor in Arabidopsis (Arabidopsis thaliana) in a manner that is independent of the JA receptor, CORONATINE INSENSITIVE1 (COI1).	jasmonic acid	36-38	RNI-like superfamily protein	Arabidopsis thaliana	217-221
29934297-5	2018	Treatment of wild-type Arabidopsis with either (-)-JA or (+)-JA reduced primary root length and LR number; the reduction of LR number was also observed in coi1 mutants.	jasmonic acid	47-53	RNI-like superfamily protein	Arabidopsis thaliana	155-159
30044467-7	2018	A link between ABA and JA signaling mediated through a direct interaction of the ABA responsive elements-binding factor ABF3 with the basic helix-loop-helix transcription factor MYC2 was validated by yeast two-hybrid and bimolecular fluorescence complementation (BiFC) assays.	jasmonic acid	23-25	abscisic acid responsive elements-binding factor 3	Arabidopsis thaliana	120-124
30044467-7	2018	A link between ABA and JA signaling mediated through a direct interaction of the ABA responsive elements-binding factor ABF3 with the basic helix-loop-helix transcription factor MYC2 was validated by yeast two-hybrid and bimolecular fluorescence complementation (BiFC) assays.	jasmonic acid	23-25	Basic helix-loop-helix (bHLH) DNA-binding family protein	Arabidopsis thaliana	178-182
30070083-12	2018	In summary, the results suggested that CmLOX09 might play a positive role in the response to MeJA through the hydroperoxide lyase (HPL) pathway to produce C6 alcohols and aldehydes, and in the response to P. xanthii through the allene oxide synthase (AOS) pathway to form JA.	jasmonic acid	95-97	allene oxide synthase 2-like	Cucumis melo	131-134
29777364-9	2018	Decreased transcription of jasmonate biosynthesis and responsive-related transcripts (LOX2; LOX3; LOX6; JAL34; JR1) might contribute towards suppression of the negative effects of methyl jasmonate (MeJa) such as chlorophyll loss and decreases in RuBisCO and photosynthesis.	jasmonic acid	27-36	lipoxygenase 2	Arabidopsis thaliana	86-90
29777364-9	2018	Decreased transcription of jasmonate biosynthesis and responsive-related transcripts (LOX2; LOX3; LOX6; JAL34; JR1) might contribute towards suppression of the negative effects of methyl jasmonate (MeJa) such as chlorophyll loss and decreases in RuBisCO and photosynthesis.	jasmonic acid	27-36	lipoxygenase 3	Arabidopsis thaliana	92-96
29777364-9	2018	Decreased transcription of jasmonate biosynthesis and responsive-related transcripts (LOX2; LOX3; LOX6; JAL34; JR1) might contribute towards suppression of the negative effects of methyl jasmonate (MeJa) such as chlorophyll loss and decreases in RuBisCO and photosynthesis.	jasmonic acid	27-36	PLAT/LH2 domain-containing lipoxygenase family protein	Arabidopsis thaliana	98-102
29777364-9	2018	Decreased transcription of jasmonate biosynthesis and responsive-related transcripts (LOX2; LOX3; LOX6; JAL34; JR1) might contribute towards suppression of the negative effects of methyl jasmonate (MeJa) such as chlorophyll loss and decreases in RuBisCO and photosynthesis.	jasmonic acid	27-36	Mannose-binding lectin superfamily protein	Arabidopsis thaliana	111-114
29090851-0	2018	Bacillus amyloliquefaciens FZB42 represses plant miR846 to induce systemic resistance via a jasmonic acid-dependent signalling pathway.	jasmonic acid	92-105	MIR846	Arabidopsis thaliana	49-55
29090851-11	2018	Taken together, our results suggest that B. amyloliquefaciens FZB42 inoculation suppresses miR846 expression to induce Arabidopsis systemic resistance via a JA-dependent signalling pathway.	jasmonic acid	157-159	MIR846	Arabidopsis thaliana	91-97
29915353-3	2018	A combined metabolomic and transcriptomic characterization of NO-deficient nia1,2noa1-2 mutant plants suggests that NO acts attenuating the production and accumulation of osmoprotective and regulatory metabolites, such as sugars and polyamines, stress-related hormones, such as ABA and jasmonates, and antioxidants, such as anthocyanins and flavonoids.	jasmonic acid	286-296	P-loop containing nucleoside triphosphate hydrolases superfamily protein	Arabidopsis thaliana	81-85
29966336-4	2018	Functional studies in Arabidopsis revealed that NOG1-2 regulates guard cell signaling in response to biotic and abiotic stimulus through jasmonic acid (JA)- and abscisic acid (ABA)-mediated pathways.	jasmonic acid	137-150	GTP binding protein 4	Homo sapiens	48-54
29966336-4	2018	Functional studies in Arabidopsis revealed that NOG1-2 regulates guard cell signaling in response to biotic and abiotic stimulus through jasmonic acid (JA)- and abscisic acid (ABA)-mediated pathways.	jasmonic acid	152-154	GTP binding protein 4	Homo sapiens	48-54
29966336-7	2018	We explored the role of NOG1-2 binding with JAZ9 for COI1-mediated JA signaling and hypothesized that its function may be closely linked to MYC2 transcription factor in the regulation of the JA-signaling cascade in stomatal defense against bacterial pathogens.	jasmonic acid	44-46	GTP binding protein 4	Homo sapiens	24-28
29899210-5	2018	Results revealed that AtSR1 negatively regulates most of the immune-related genes involved in molecular pattern-triggered immunity (PTI), effector-triggered immunity (ETI), and in salicylic acid (SA)- and jasmonate (JA)-mediated signaling pathways.	jasmonic acid	205-214	signal responsive 1	Arabidopsis thaliana	22-27
29899210-5	2018	Results revealed that AtSR1 negatively regulates most of the immune-related genes involved in molecular pattern-triggered immunity (PTI), effector-triggered immunity (ETI), and in salicylic acid (SA)- and jasmonate (JA)-mediated signaling pathways.	jasmonic acid	216-218	signal responsive 1	Arabidopsis thaliana	22-27
28976113-5	2018	On Pst DC3000 infection, the Fd2-KO mutant accumulates increased levels of jasmonic acid and displays compromised salicylic acid-related immune responses.	jasmonic acid	75-88	2Fe-2S ferredoxin-like superfamily protein	Arabidopsis thaliana	29-32
29569783-2	2018	A series of SGA biosynthetic genes is known to be upregulated in Solanaceae species by jasmonate-responsive Ethylene Response Factor transcription factors, including JRE4 (otherwise known as GAME9), but the exact regulatory significance in planta of each factor has remained unaddressed.	jasmonic acid	87-96	ethylene-responsive transcription factor 1	Solanum lycopersicum	191-196
29428248-6	2018	Data obtained from real-time PCR assays show that the constitutive expression of StAP-PSI induces the expression of genes that regulate jasmonic acid signalling pathway, such as PDF1.2, in response to infection due to necrotrophic pathogens.	jasmonic acid	136-149	plant defensin 1.2	Arabidopsis thaliana	178-184
29384041-2	2018	We previously reported inducible expression of a Solanum lycopersicum AKR4B (SlAKR4B) in tomato leaves treated with salicylic acid and jasmonic acid, and high promoter activity of SlAKR4B in tomato leaf protoplasts.	jasmonic acid	135-148	aldo-keto reductase 4B	Solanum lycopersicum	70-75
29625034-6	2018	When plants are injured by insect attack, injury rapidly triggers calcium influxes to activate calmodulin-dependent phosphorylation of JAV1, which disintegrates JJW complex and activates JA biosynthesis, giving rise to the rapid burst of JA for plant defense.	jasmonic acid	135-137	calmodulin 1	Homo sapiens	95-105
29625034-6	2018	When plants are injured by insect attack, injury rapidly triggers calcium influxes to activate calmodulin-dependent phosphorylation of JAV1, which disintegrates JJW complex and activates JA biosynthesis, giving rise to the rapid burst of JA for plant defense.	jasmonic acid	187-189	calmodulin 1	Homo sapiens	95-105
29528226-1	2018	MYC2, a basic helix-loop-helix transcription factor, is a master regulator in Jasmonic acid (JA) signaling pathway.	jasmonic acid	78-91	transcription factor MYC2	Solanum lycopersicum	0-4
29528226-1	2018	MYC2, a basic helix-loop-helix transcription factor, is a master regulator in Jasmonic acid (JA) signaling pathway.	jasmonic acid	93-95	transcription factor MYC2	Solanum lycopersicum	0-4
29138938-0	2018	Jasmonic acid-induced NO activates MEK1/2 in regulating the metabolism of ascorbate and glutathione in maize leaves.	jasmonic acid	0-13	MEK homolog 1	Zea mays	35-41
29138938-1	2018	This study investigated the relationship between MEK1/2 and nitric oxide (NO) in jasmonic acid (JA)-regulated metabolism of ascorbate and glutathione in maize leaves.	jasmonic acid	81-94	MEK homolog 1	Zea mays	49-55
29138938-1	2018	This study investigated the relationship between MEK1/2 and nitric oxide (NO) in jasmonic acid (JA)-regulated metabolism of ascorbate and glutathione in maize leaves.	jasmonic acid	96-98	MEK homolog 1	Zea mays	49-55
29138938-2	2018	The results showed that JA increased the activities of APX, GR, MDHAR, DHAR, GalLDH, and gamma-ECS; the contents of AsA and GSH; and the production of NO.	jasmonic acid	24-26	ascorbate peroxidase 2	Zea mays	55-58
29138938-5	2018	The results of western blot showed that JA enhanced the phosphorylation level of MEK1/2.	jasmonic acid	40-42	MEK homolog 1	Zea mays	81-87
29138938-6	2018	Pre-treatments with L-NAME and cPTIO suppressed JA-induced phosphorylation level of MEK1/2.	jasmonic acid	48-50	MEK homolog 1	Zea mays	84-90
29138938-7	2018	Our results suggested that JA-induced NO activated MEK1/2 by increasing the phosphorylation level, which, in turn, resulted in the upregulation of ascorbate and glutathione metabolism in maize leaves.	jasmonic acid	27-29	MEK homolog 1	Zea mays	51-57
29713366-2	2018	Jasmonic acid and systemin are proposed to act through a positive feed-back loop with jasmonic acid, playing synergistic roles in response to both wounding and insect attack.	jasmonic acid	86-99	systemin	Solanum lycopersicum	18-26
29344830-3	2018	Previously, the jasmonic acid-induced transcription factor, RAP2.6L, related to APETALA 2.6-like, was identified as a spatially expressed factor involved in tissue reunion in partially incised flowering stems of Arabidopsis.	jasmonic acid	16-29	Integrase-type DNA-binding superfamily protein	Arabidopsis thaliana	80-89
29344830-5	2018	The jasmonic acid-responsive genes AOS and JAZ10 were transiently expressed immediately after grafting.	jasmonic acid	4-17	allene oxide synthase	Arabidopsis thaliana	35-38
29344830-5	2018	The jasmonic acid-responsive genes AOS and JAZ10 were transiently expressed immediately after grafting.	jasmonic acid	4-17	jasmonate-zim-domain protein 10	Arabidopsis thaliana	43-48
29384041-2	2018	We previously reported inducible expression of a Solanum lycopersicum AKR4B (SlAKR4B) in tomato leaves treated with salicylic acid and jasmonic acid, and high promoter activity of SlAKR4B in tomato leaf protoplasts.	jasmonic acid	135-148	aldo-keto reductase 4B	Solanum lycopersicum	77-84
29434207-7	2018	Additionally, increased activities of glyoxalases I and II were correlated with reduced levels of methylglyoxal in JA-pretreated alkaline-stressed maize plants.	jasmonic acid	115-117	glyoxylase 1	Zea mays	38-58
29306046-6	2018	We found that EC directly binds the promoter of MYC2, which encodes a key activator of JA-induced leaf senescence, and represses its expression.	jasmonic acid	87-89	Basic helix-loop-helix (bHLH) DNA-binding family protein	Arabidopsis thaliana	48-52
29306046-7	2018	Genetic analysis further demonstrated that the accelerated JA-induced leaf senescence in EC mutants is abrogated by myc2 myc3 myc4 triple mutation.	jasmonic acid	59-61	Basic helix-loop-helix (bHLH) DNA-binding family protein	Arabidopsis thaliana	116-120
29193778-8	2018	Elevated levels of salicylic acid and decreased level of jasmonate were detected in the pelota mutant.	jasmonic acid	57-66	pelota	Drosophila melanogaster	88-94
29046014-5	2018	RNA-seq, qRT-PCR, and LC-MS/MS analysis revealed that biosynthesis of gibberellin, cytokinin, and jasmonic acid was down-regulated by CRY1a.	jasmonic acid	98-111	cryptochrome 1	Solanum lycopersicum	134-139
29291349-0	2018	An OPR3-independent pathway uses 4,5-didehydrojasmonate for jasmonate synthesis.	jasmonic acid	46-55	oxophytodienoate-reductase 3	Arabidopsis thaliana	3-7
28775155-7	2018	The generated NADPH is also an essential cofactor across other peroxisomal pathways, including the antioxidant ascorbate-glutathione cycle and unsaturated fatty acid beta-oxidation, the latter being a source of powerful signaling molecules such as JA and NO2-FA.	jasmonic acid	248-250	2,4-dienoyl-CoA reductase 1	Homo sapiens	14-19
29291349-1	2018	Biosynthesis of the phytohormone jasmonoyl-isoleucine (JA-Ile) requires reduction of the JA precursor 12-oxo-phytodienoic acid (OPDA) by OPDA reductase 3 (OPR3).	jasmonic acid	55-57	oxophytodienoate-reductase 3	Arabidopsis thaliana	155-159
29291349-3	2018	To clarify the role of OPR3 and OPDA in JA-independent defenses, we isolated and characterized a loss-of-function opr3-3 allele.	jasmonic acid	40-42	oxophytodienoate-reductase 3	Arabidopsis thaliana	114-118
29291349-6	2018	OPR2 was found to reduce 4,5-didehydro-JA to JA, explaining the accumulation of JA-Ile and activation of JA-Ile-responses in opr3-3 mutants.	jasmonic acid	39-41	12-oxophytodienoate reductase 2	Arabidopsis thaliana	0-4
29291349-6	2018	OPR2 was found to reduce 4,5-didehydro-JA to JA, explaining the accumulation of JA-Ile and activation of JA-Ile-responses in opr3-3 mutants.	jasmonic acid	39-41	oxophytodienoate-reductase 3	Arabidopsis thaliana	125-129
29291349-6	2018	OPR2 was found to reduce 4,5-didehydro-JA to JA, explaining the accumulation of JA-Ile and activation of JA-Ile-responses in opr3-3 mutants.	jasmonic acid	45-47	12-oxophytodienoate reductase 2	Arabidopsis thaliana	0-4
29291349-6	2018	OPR2 was found to reduce 4,5-didehydro-JA to JA, explaining the accumulation of JA-Ile and activation of JA-Ile-responses in opr3-3 mutants.	jasmonic acid	45-47	oxophytodienoate-reductase 3	Arabidopsis thaliana	125-129
29229698-0	2018	Laccase GhLac1 Modulates Broad-Spectrum Biotic Stress Tolerance via Manipulating Phenylpropanoid Pathway and Jasmonic Acid Synthesis.	jasmonic acid	109-122	laccase-4-like	Gossypium hirsutum	8-14
29229698-6	2018	Suppression of GhLac1 expression leads to a redirection of metabolic flux in the phenylpropanoid pathway, causing the accumulation of JA and secondary metabolites that confer resistance to V. dahliae and cotton bollworm; it also leads to increased susceptibility to cotton aphid.	jasmonic acid	134-136	laccase-4-like	Gossypium hirsutum	15-21
29293407-2	2018	JAs act through CORONATINE INSENSITIVE1 (COI1) to induce the degradation of JA ZIM-domain (JAZ) proteins, and activate JAZ-repressed transcription factors to regulate plant response.	jasmonic acid	0-3	RNI-like superfamily protein	Arabidopsis thaliana	41-45
29422909-6	2018	AtACBP3pro::GUS was induced locally in Arabidopsis leaves upon wounding, and the expression of wound-responsive jasmonic acid marker genes (JASMONATE ZIM-DOMAIN10, VEGETATIVE STORAGE PROTEIN2, and LIPOXYGENASE2) increased more significantly in both locally wounded and systemic leaves of the wild type in comparison to acbp3 and AtACBP3-RNAi.	jasmonic acid	112-125	acyl-CoA-binding domain 3	Arabidopsis thaliana	0-7
29422909-9	2018	Taken together, these results suggest that AtACBP3 is likely to be a phloem-mobile protein that affects the FA pool and jasmonate content in the phloem, possibly by its binding to acyl-CoA esters.	jasmonic acid	120-129	acyl-CoA-binding domain 3	Arabidopsis thaliana	43-50
29403509-6	2017	Moreover, anp double mutants and plants overexpressing single ANPs (ANP1 or ANP3) respectively showed increased and reduced accumulation of jasmonic acid and PDF1.2 transcripts upon ISX treatment, suggesting that ANPs are part of the pathway targeted by this inhibitor and play a role in cell wall integrity surveillance.	jasmonic acid	140-153	NPK1-related protein kinase 1	Arabidopsis thaliana	68-72
29403509-6	2017	Moreover, anp double mutants and plants overexpressing single ANPs (ANP1 or ANP3) respectively showed increased and reduced accumulation of jasmonic acid and PDF1.2 transcripts upon ISX treatment, suggesting that ANPs are part of the pathway targeted by this inhibitor and play a role in cell wall integrity surveillance.	jasmonic acid	140-153	NPK1-related protein kinase 3	Arabidopsis thaliana	76-80
29125388-1	2018	Perception of the plant hormone jasmonoyl-isoleucine (JA-Ile) involves the formation of a co-receptor complex between COI1, the F-box subunit of a SCF-type E3 ubiquitin ligase, and its substrates, a group of jasmonate ZIM-domain (JAZ) transcriptional repressors.	jasmonic acid	54-56	RNI-like superfamily protein	Arabidopsis thaliana	118-122
28626940-1	2018	Ethylene response factor 1 (ERF1) is an essential integrator of the jasmonate and ethylene signalling pathways coordinating a large number of genes involved in plant defences.	jasmonic acid	68-77	ethylene responsive element binding factor 1	Arabidopsis thaliana	28-32
28905991-8	2018	Finally, we found that TOR antagonizes the action of the classic defense hormones salicylic acid and jasmonic acid.	jasmonic acid	101-114	target of rapamycin	Arabidopsis thaliana	23-26
29180381-10	2018	Interestingly, the ATP-induced JAZ1 degradation was attenuated in the JA receptor mutant, coi1, but not in the JA biosynthesis mutant, aos, or upon addition of JA biosynthesis inhibitors.	jasmonic acid	31-33	RNI-like superfamily protein	Arabidopsis thaliana	90-94
29180381-10	2018	Interestingly, the ATP-induced JAZ1 degradation was attenuated in the JA receptor mutant, coi1, but not in the JA biosynthesis mutant, aos, or upon addition of JA biosynthesis inhibitors.	jasmonic acid	70-72	jasmonate-zim-domain protein 1	Arabidopsis thaliana	31-35
29180381-11	2018	Immunoprecipitation analysis demonstrated that ATP increases the interaction between COI1 and JAZ1, suggesting direct cross talk between extracellular ATP and JA in intracellular signaling events.	jasmonic acid	94-96	RNI-like superfamily protein	Arabidopsis thaliana	85-89
28845535-7	2017	Most of these observed changes were accompanied by significantly altered phytohormone levels in the raptor1b seeds, with increases in abscisic acid, auxin and jasmonic acid, which are known to inhibit germination.	jasmonic acid	159-172	Regulatory-associated protein of TOR 1	Arabidopsis thaliana	100-108
29271721-6	2017	qRT-PCR tests have shown roots overexpressing WRKY45 suppressed the jasmonic acid and salicylic acid marker genes, proteinase inhibitor (PI), and pathogenesis related protein (PR1), respectively, and also the cytokinin response factors CRF1 and CRF6.	jasmonic acid	68-81	proteinase inhibitor type-2 TR8	Solanum lycopersicum	115-135
29875545-0	2018	The Role of MPK6 as Mediator of Ethylene/Jasmonic Acid Signaling in Serendipita indica-Colonized Arabidopsis Roots.	jasmonic acid	41-54	MAP kinase 6	Arabidopsis thaliana	12-16
29875545-4	2018	Here, we demonstrate that mpk6 roots are significantly less colonized by S. indica compared to wild-type roots and the foliar application of plant hormones, ethylene, or jasmonic acid, restores the colonization rate at least to the wild-type level.	jasmonic acid	170-183	MAP kinase 6	Arabidopsis thaliana	26-30
28510189-3	2017	Moreover, AP2/ERF TF also participates in response to the signals of auxin, cytokinin, abscisic acid, and jasmonate.	jasmonic acid	106-115	transcription factor AP-2 alpha	Homo sapiens	10-13
28510189-3	2017	Moreover, AP2/ERF TF also participates in response to the signals of auxin, cytokinin, abscisic acid, and jasmonate.	jasmonic acid	106-115	ETS2 repressor factor	Homo sapiens	14-17
29114014-0	2017	Arabidopsis Pollen Fertility Requires the Transcription Factors CITF1 and SPL7 That Regulate Copper Delivery to Anthers and Jasmonic Acid Synthesis.	jasmonic acid	124-137	squamosa promoter binding protein-like 7	Arabidopsis thaliana	74-78
28827172-0	2017	The bHLH Transcription Factors MYC2, MYC3, and MYC4 Are Required for Jasmonate-Mediated Inhibition of Flowering in Arabidopsis.	jasmonic acid	69-78	Basic helix-loop-helix (bHLH) DNA-binding family protein	Arabidopsis thaliana	31-35
28827172-0	2017	The bHLH Transcription Factors MYC2, MYC3, and MYC4 Are Required for Jasmonate-Mediated Inhibition of Flowering in Arabidopsis.	jasmonic acid	69-78	Basic helix-loop-helix (bHLH) DNA-binding family protein	Arabidopsis thaliana	37-41
28827172-0	2017	The bHLH Transcription Factors MYC2, MYC3, and MYC4 Are Required for Jasmonate-Mediated Inhibition of Flowering in Arabidopsis.	jasmonic acid	69-78	Basic helix-loop-helix (bHLH) DNA-binding family protein	Arabidopsis thaliana	47-51
28102548-6	2017	In examining recent advances in the field, we highlight emerging roles of phyB as a major modulator of hormones related to plant immunity, in particular salicylic acid and jasmonic acid (JA).	jasmonic acid	172-185	phytochrome B	Arabidopsis thaliana	74-78
28102548-6	2017	In examining recent advances in the field, we highlight emerging roles of phyB as a major modulator of hormones related to plant immunity, in particular salicylic acid and jasmonic acid (JA).	jasmonic acid	187-189	phytochrome B	Arabidopsis thaliana	74-78
28961818-12	2017	Arabidopsis signalling mutants and PDF1.2 and VSP2 promoter-driven GUS lines indicated that the lipopeptide fraction involved jasmonic-acid-dependent host responses for suppression of fungal growth indicative of ISR.	jasmonic acid	126-139	plant defensin 1.2	Arabidopsis thaliana	35-41
28961818-12	2017	Arabidopsis signalling mutants and PDF1.2 and VSP2 promoter-driven GUS lines indicated that the lipopeptide fraction involved jasmonic-acid-dependent host responses for suppression of fungal growth indicative of ISR.	jasmonic acid	126-139	vegetative storage protein 2	Arabidopsis thaliana	46-50
28703028-11	2017	In addition, quantification of multiple phytohormones and analyses of their gene expression profiles revealed that both the salicylic acid (SA)- and jasmonic acid (JA)-mediated signaling pathways were down-regulated in the fry1-2 and alx8 mutants.	jasmonic acid	149-162	SAL1 phosphatase-like protein	Arabidopsis thaliana	234-238
27415633-6	2017	Moreover, transient overexpression of ERF68 led to spontaneous lesions in tomato and tobacco leaves and enhanced the expression of genes involved in ET, SA, jasmonic acid (JA) and hypersensitive response (HR) pathways, whereas silencing of ERF68 increased tomato susceptibility to two incompatible Xanthomonas spp.	jasmonic acid	157-170	ethylene-responsive transcription factor 2	Solanum lycopersicum	38-43
27415633-6	2017	Moreover, transient overexpression of ERF68 led to spontaneous lesions in tomato and tobacco leaves and enhanced the expression of genes involved in ET, SA, jasmonic acid (JA) and hypersensitive response (HR) pathways, whereas silencing of ERF68 increased tomato susceptibility to two incompatible Xanthomonas spp.	jasmonic acid	172-174	ethylene-responsive transcription factor 2	Solanum lycopersicum	38-43
28973025-8	2017	In contrast to the tested MAMPs, AtPep1 induced SA- and JA-signalling markers in the root and caused a severe inhibition of root growth.	jasmonic acid	56-58	precursor of peptide 1	Arabidopsis thaliana	33-39
28703028-11	2017	In addition, quantification of multiple phytohormones and analyses of their gene expression profiles revealed that both the salicylic acid (SA)- and jasmonic acid (JA)-mediated signaling pathways were down-regulated in the fry1-2 and alx8 mutants.	jasmonic acid	164-166	SAL1 phosphatase-like protein	Arabidopsis thaliana	234-238
28703028-12	2017	These results suggest that the SAL1-PAP chloroplast retrograde pathway is involved in plant immunity by regulating the SA- and JA-mediated signaling pathways.	jasmonic acid	127-129	SAL1 phosphatase-like protein	Arabidopsis thaliana	31-35
28846870-6	2017	Suppression of SPHK1 decreases SA production whereas promotes jasmonic acid (JA) biosynthesis in response to FB1 applications.	jasmonic acid	62-75	sphingosine kinase 1	Arabidopsis thaliana	15-20
28846870-6	2017	Suppression of SPHK1 decreases SA production whereas promotes jasmonic acid (JA) biosynthesis in response to FB1 applications.	jasmonic acid	77-79	sphingosine kinase 1	Arabidopsis thaliana	15-20
28846870-7	2017	Our findings indicate a role of SPHK1 in modulating FB1-triggered cell death via SA and JA pathway interactions.	jasmonic acid	88-90	sphingosine kinase 1	Arabidopsis thaliana	32-37
28961242-3	2017	Surprisingly, MUR1 mutation induced an enrichment of resistant interunit bonds in lignin and triggered the overexpression of many genes involved in lignified tissue formation and in jasmonic acid signaling.	jasmonic acid	182-195	NAD(P)-binding Rossmann-fold superfamily protein	Arabidopsis thaliana	14-18
28928760-2	2017	Previous studies showed that JA induces CORONATINE INSENSITIVE 1-mediated degradation of JA ZIM-domain (JAZ) proteins, and activates the MYB transcription factors (such as MYB21 and MYB24) to regulate stamen development.	jasmonic acid	29-31	myb domain protein 21	Arabidopsis thaliana	172-177
28928760-2	2017	Previous studies showed that JA induces CORONATINE INSENSITIVE 1-mediated degradation of JA ZIM-domain (JAZ) proteins, and activates the MYB transcription factors (such as MYB21 and MYB24) to regulate stamen development.	jasmonic acid	29-31	myb domain protein 24	Arabidopsis thaliana	182-187
28928760-5	2017	Interestingly, male sterility of the JA-deficient mutant opr3 can be rescued by suitable level of the MYB24 overexpression but not by excessive high level of MYB24.	jasmonic acid	37-39	oxophytodienoate-reductase 3	Arabidopsis thaliana	57-61
28928760-5	2017	Interestingly, male sterility of the JA-deficient mutant opr3 can be rescued by suitable level of the MYB24 overexpression but not by excessive high level of MYB24.	jasmonic acid	37-39	myb domain protein 24	Arabidopsis thaliana	102-107