PMID-sentid	Pub_year	Sent_text	compound_name	comp_offset	prot_official_name	organism	prot_offset
15203331-0	2004	Glycoform composition profiling of O-glycopeptides derived from human serum IgA1 by matrix-assisted laser desorption ionization-time of flight-mass spectrometry.	o-glycopeptides	35-50	immunoglobulin heavy constant alpha 1	Homo sapiens	76-80
15337464-2	2004	This micro-heterogeneity has been monitored by analysis of IgA1-derived tryptic O-glycopeptides using matrix assisted laser desorption ionisation time-of-flight mass spectrometry (MALDI-ToF-MS) analysis.	o-glycopeptides	80-95	immunoglobulin heavy constant alpha 1	Homo sapiens	59-63
16918445-9	2006	Evidence based on work with CD4(+) T-hybridomas confirms that O-glycopeptides can be effectively presented to T-cells and that glycans can form integral parts of the TCR defined epitopes.	o-glycopeptides	62-77	CD4 molecule	Homo sapiens	28-31
32217362-6	2020	We were able to isolate several kinds of O-glycopeptides from lactophorin and kappa-casein: six peptide sequences and five kinds of O-glycans.	o-glycopeptides	41-56	glycosylation dependent cell adhesion molecule 1	Bos taurus	62-73
3621238-1	1987	Mucin-type O-glycopeptides containing the beta-D-Galp-(1----3)-D-GalpNAc disaccharide core unit, which is also the T-antigenic determinant, were synthesized from D-galactose, 2-azido-2-deoxy-D-galactose, 2-azido-2-deoxylactose, and L-serine precursors by applying the trichloroacetimidate method.	o-glycopeptides	11-26	LOC100508689	Homo sapiens	0-5
3621238-1	1987	Mucin-type O-glycopeptides containing the beta-D-Galp-(1----3)-D-GalpNAc disaccharide core unit, which is also the T-antigenic determinant, were synthesized from D-galactose, 2-azido-2-deoxy-D-galactose, 2-azido-2-deoxylactose, and L-serine precursors by applying the trichloroacetimidate method.	o-glycopeptides	11-26	galanin like peptide	Homo sapiens	49-53
33406838-6	2021	In addition, we have identified eight additional O-glycopeptides on the spike glycoprotein and confirmed that the spike protein is heavily N-glycosylated.	o-glycopeptides	49-64	surface glycoprotein	Severe acute respiratory syndrome coronavirus 2	72-77
1418987-5	1992	Tryptic digests were applied to jacalin-agarose and specifically-bound O-glycopeptides (alpha OGP and beta OGP) were eluted with buffer containing 50 mM alpha-methylgalactoside as the haptenic sugar.	o-glycopeptides	71-86	oviductal glycoprotein 1	Mus musculus	94-97
1418987-5	1992	Tryptic digests were applied to jacalin-agarose and specifically-bound O-glycopeptides (alpha OGP and beta OGP) were eluted with buffer containing 50 mM alpha-methylgalactoside as the haptenic sugar.	o-glycopeptides	71-86	oviductal glycoprotein 1	Mus musculus	107-110
1418987-7	1992	Purified O-glycopeptides were characterized with respect to amino acid and carbohydrate compositions and sequenced by automated Edman degradation; alpha OGP was a 41-residue glycopeptide with three O-linked sugar chains.	o-glycopeptides	9-24	oviductal glycoprotein 1	Mus musculus	153-156
34347445-0	2021	Systematic Evaluation of Fragmentation Methods for Unlabeled and Isobaric Mass Tag-Labeled O-Glycopeptides.	o-glycopeptides	91-106	long intergenic non-protein coding RNA 1194	Homo sapiens	79-82
34347445-5	2021	We demonstrated its improvements in identification and quantification of isobaric mass tag-labeled O-glycopeptides and showcased the discovery of the specific glycosites of GalNAc transferase 11 (GALNT11) in HepG2 cells.	o-glycopeptides	99-114	long intergenic non-protein coding RNA 1194	Homo sapiens	87-90
32584546-0	2020	Classification of Mucin-Type O-Glycopeptides Using Higher-Energy Collisional Dissociation in Mass Spectrometry.	o-glycopeptides	29-44	LOC100508689	Homo sapiens	18-23
32584546-5	2020	Furthermore, we classified the different mucin types of O-glycopeptides from characteristic B2 (HexNAc2) or Y2alpha (PEP + HexNAc2), and Y2beta (PEP + HexNAcHex) fragment ions, along with the number of GlcNAc.	o-glycopeptides	56-71	LOC100508689	Homo sapiens	41-46
32584546-5	2020	Furthermore, we classified the different mucin types of O-glycopeptides from characteristic B2 (HexNAc2) or Y2alpha (PEP + HexNAc2), and Y2beta (PEP + HexNAcHex) fragment ions, along with the number of GlcNAc.	o-glycopeptides	56-71	progestagen associated endometrial protein	Homo sapiens	117-120
32584546-7	2020	The mucin type of O-glycopeptides from human urine and plasma was confirmed with an overall accuracy of 96%.	o-glycopeptides	18-33	LOC100508689	Homo sapiens	4-9
32275135-7	2020	AOGP exhibited superior performance in identifying intact O-glycopeptides of the human erythropoietin with a total of 188 O-glycopeptide spectra reported under 1% FDR.	o-glycopeptides	58-73	erythropoietin	Homo sapiens	87-101
32217362-6	2020	We were able to isolate several kinds of O-glycopeptides from lactophorin and kappa-casein: six peptide sequences and five kinds of O-glycans.	o-glycopeptides	41-56	casein kappa	Bos taurus	78-90
28970103-15	2018	Furthermore, quantitative analysis of intact O-glycopeptides from the serum samples of IgA nephropathy (IgAN) patients and healthy donors was performed, and the results showed the potential of the strategy to discover O-glycosylation biomarkers.	o-glycopeptides	45-60	IGAN1	Homo sapiens	87-102
28970103-15	2018	Furthermore, quantitative analysis of intact O-glycopeptides from the serum samples of IgA nephropathy (IgAN) patients and healthy donors was performed, and the results showed the potential of the strategy to discover O-glycosylation biomarkers.	o-glycopeptides	45-60	IGAN1	Homo sapiens	104-108
25187573-4	2014	In this study, using a liquid chromatography-tandem mass spectrometry approach, employing both collision-induced and electron-transfer dissociation fragmentation methods, we identified 185 O-glycopeptides within the STP-rich domain of human synovial lubricin.	o-glycopeptides	189-204	proteoglycan 4	Homo sapiens	250-258
25450502-4	2015	We detected 28 O-glycopeptides from 7 O-glycosylation regions of human OPN, occupied by highly heterogeneous O-glycans.	o-glycopeptides	15-30	secreted phosphoprotein 1	Homo sapiens	71-74
26443390-1	2015	RATIONALE: Schindler disease is caused by the deficient activity of alpha-N-acetylgalactosaminidase, which leads to an abnormal accumulation of O-glycopeptides in tissues and body fluids.	o-glycopeptides	144-159	alpha-N-acetylgalactosaminidase	Homo sapiens	68-99
23765987-0	2013	LC-MS3 quantification of O-glycopeptides in human serum.	o-glycopeptides	25-40	MS3	Homo sapiens	3-6
23891555-6	2013	Following a novel strategy, IgA1 hinge-region O-glycopeptides were fractionated by reversed-phase liquid chromatography using a microgradient device and identified by MALDI-TOF/TOF tandem MS (MS/MS).	o-glycopeptides	46-61	immunoglobulin heavy constant alpha 1	Homo sapiens	28-32
23765987-4	2013	Here, we report a selective and sensitive MS2 followed by further fragmentation in the linear IT-MS analyzer (MS3) multiple reaction monitoring workflow mass spectrometric method for direct analysis of O-glycopeptides in difficult matrix such as serum.	o-glycopeptides	202-217	MS3	Homo sapiens	110-113
23765987-4	2013	Here, we report a selective and sensitive MS2 followed by further fragmentation in the linear IT-MS analyzer (MS3) multiple reaction monitoring workflow mass spectrometric method for direct analysis of O-glycopeptides in difficult matrix such as serum.	o-glycopeptides	202-217	MS2	Homo sapiens	42-45
22075168-6	2012	In conclusion, exploiting non-targeted UPLC-MS based approach for the investigation of UTI related changes in urine, we have identified and structurally characterized unique O-glycopeptides, which are, to our knowledge, the first demonstration of O-glycosylation of human fibrinogen alpha 1-chain.	o-glycopeptides	174-189	alpha-1-microglobulin/bikunin precursor	Homo sapiens	87-90
17655836-0	2007	Resistance to deglycosylation by ammonia of IgA1 O-glycopeptides: implications for the beta-elimination of O-glycans linked to serine and threonine.	o-glycopeptides	49-64	immunoglobulin heavy constant alpha 1	Homo sapiens	44-48
17655836-1	2007	Pools of O-glycopeptides (and their deglycosylated analogues) derived from trypsin-digested normal human serum IgA1 have been treated with ammonia under conditions reported to result in complete liberation of O-glycans linked to serine and threonine residues in glycopeptides and glycoproteins.	o-glycopeptides	9-24	immunoglobulin heavy constant alpha 1	Homo sapiens	111-115