PMID-sentid	Pub_year	Sent_text		comp_official_name	comp_offsetprotein_name	organism	prot_offset
25914113-2	2015	The neutral hydrocarbons and their radical cations were studied utilizing density functional theory (DFT) and ab initio (MP2) methods, which reproduce the experimental geometries and ionization potentials well.	Hydrocarbons	12-24	tryptase pseudogene 1	Homo sapiens	121-124	
26596756-5	2012	Following the framework of the OPLS-AA parametrization, we refined the torsional parameters for hydrocarbons by fitting to the gas-phase ab initio energy profiles calculated at the accurate MP2/aug-cc-pVTZ theory level.	Hydrocarbons	96-108	tryptase pseudogene 1	Homo sapiens	190-193	
19586004-1	2009	The magnetically induced current densities for ring-shaped hydrocarbons are studied at the density functional theory (DFT) and second-order Moller-Plesset (MP2) levels using gauge-including atomic orbitals.	Hydrocarbons	59-71	tryptase pseudogene 1	Homo sapiens	156-159	
16277336-0	2005	G3(MP2) ring strain in bicyclic phosphorus heterocycles and their hydrocarbon analogues.	Hydrocarbons	66-77	tryptase pseudogene 1	Homo sapiens	3-6	
15962049-2	2005	1 adopts an open structure similar to that of the isoelectronic hydrocarbon molecule permethylbutadiene; the central B-N bond distance at 148.0/149.3(7) pm (MP2/GED) corresponds to a single covalent N--B bond distance, the two terminal distances, 140.9/140.5(4) pm and 141.8/141.3(4) pm, correspond to the distance between N and B atoms joined by a covalent sigma-bond and a dative pi-bond.	Hydrocarbons	64-75	tryptase pseudogene 1	Homo sapiens	157-160	
25382814-2	2014	Both the structures and the outcomes of exploratory reactions of the parent hydrocarbon are predicted and explained in detail through high-level composite ab initio MO G4(MP2) computational studies.	Hydrocarbons	76-87	tryptase pseudogene 1	Homo sapiens	171-174	
19548727-8	2009	Hydrogen sulfide interacts more strongly than water with the hydrocarbons studied, leading to a limiting value of -21.7 kJ/mol with the SCS-MP2 method.	Hydrocarbons	61-73	tryptase pseudogene 1	Homo sapiens	140-143