PMID-sentid	Pub_year	Sent_text		comp_official_name	comp_offsetprotein_name	organism	prot_offset
19198902-7	2009	In order to elucidate the physical origins of this phenomenon, i.e. to analyze how the modification of adenine by hydroxyl radical is reflected in the change of intermolecular interaction energy components, a variational-perturbational decomposition scheme was applied at the MP2/aug-cc-pVDZ level of theory.	Hydroxyl Radical	114-130	tryptase pseudogene 1	Homo sapiens	276-279	
19830768-1	2009	The effect of a single water molecule on the reaction mechanism of the gas-phase reaction between formic acid and the hydroxyl radical was investigated with high-level quantum mechanical calculations using DFT-B3LYP, MP2 and CCSD(T) theoretical approaches in concert with the 6-311+G(2df,2p) and aug-cc-pVTZ basis sets.	Hydroxyl Radical	118-134	tryptase pseudogene 1	Homo sapiens	217-220	
31815490-13	2020	The 200 picoseconds NVT well-tempered metadynamics at 300 K has been simulated to compute the OSV-MP2 rotational free energy surface of coupled hydroxyl and methyl rotors for ethanol molecule.	Hydroxyl Radical	144-152	tryptase pseudogene 1	Homo sapiens	98-101	
28327537-7	2017	MP2MDCS and MP4MDCS with more than 90% scavenging indices both had great scavenging ability on hydroxyl radicals or DPPH radicals.	Hydroxyl Radical	95-112	tryptase pseudogene 1	Homo sapiens	0-3	
20681542-2	2010	The gas phase reaction between nitric acid and hydroxyl radical, without and with a single water molecule, has been investigated theoretically using the DFT-B3LYP, MP2, QCISD, and CCSD(T) theoretical approaches with the 6-311+G(2df,2p) and aug-cc-pVTZ basis sets.	Hydroxyl Radical	47-63	tryptase pseudogene 1	Homo sapiens	164-167	
15291585-2	2004	The gas phase reaction between formic acid and hydroxyl radical has been investigated with high level quantum mechanical calculations using DFT-B3LYP, MP2, CASSCF, QCISD, and CCSD(T) theoretical approaches in connection with the 6-311+G(2df,2p) and aug-cc-pVTZ basis sets.	Hydroxyl Radical	47-63	tryptase pseudogene 1	Homo sapiens	151-154	
11254205-3	2001	In the present study, the process of proton transfer between hydroxyl and imidazole groups, a model of the crucial step in the hydrolysis of RNA by the enzymes of the RNase A family, is investigated at the quantum mechanical level of density functional theory and perturbation theory at the MP2 level.	Hydroxyl Radical	61-69	tryptase pseudogene 1	Homo sapiens	291-294