PMID-sentid Pub_year Sent_text comp_official_name comp_offsetprotein_name organism prot_offset 33176643-8 2021 RESULTS: Nimbocinol (-7.6 Kcal/mol) and sage (-7.3 Kcal/mol) exhibited maximum BA against PLpro SARS-CoV-2 as evident from molecular docking study which was found to be even better than remdesivir (-6.1 Kcal/mol), chloroquine (-5.3 Kcal/mol) and favipiravir (-5.7 Kcal/mol). Chloroquine 214-225 ORF1a polyprotein;ORF1ab polyprotein Severe acute respiratory syndrome coronavirus 2 90-95 33815808-8 2021 Aloe, azadirachtin, columbin, cirsilineol, nimbiol, nimbocinol and sage exhibited highest binding affinity and interacted with active sites of RdRp surpassing the ability of chloroquine, lamivudine, favipiravir and remdesivir to target the same. Chloroquine 174-185 ORF1a polyprotein;ORF1ab polyprotein Severe acute respiratory syndrome coronavirus 2 143-147 33200683-6 2022 Inspired by this fact, we have carried out molecular docking and dynamics simulation studies of FDA approved CQ and HCQ against SARS-CoV-2 PLpro. Chloroquine 109-111 ORF1a polyprotein;ORF1ab polyprotein Severe acute respiratory syndrome coronavirus 2 139-144 33200683-9 2022 We showed that the CQ and HCQ can bind with better binding affinity with PLpro as compared to reference known PLpro inhibitor. Chloroquine 19-21 ORF1a polyprotein;ORF1ab polyprotein Severe acute respiratory syndrome coronavirus 2 73-78 33200683-9 2022 We showed that the CQ and HCQ can bind with better binding affinity with PLpro as compared to reference known PLpro inhibitor. Chloroquine 19-21 ORF1a polyprotein;ORF1ab polyprotein Severe acute respiratory syndrome coronavirus 2 110-115 33200683-10 2022 Based on the presented findings, it can be anticipated that the SARS-CoV-2 PLpro may act as molecular target of CQ and HCQ, and can be projected for further exploration to design potent inhibitors of SARS-CoV-2 PLpro in the near future. Chloroquine 112-114 ORF1a polyprotein;ORF1ab polyprotein Severe acute respiratory syndrome coronavirus 2 75-80 33200683-10 2022 Based on the presented findings, it can be anticipated that the SARS-CoV-2 PLpro may act as molecular target of CQ and HCQ, and can be projected for further exploration to design potent inhibitors of SARS-CoV-2 PLpro in the near future. Chloroquine 112-114 ORF1a polyprotein;ORF1ab polyprotein Severe acute respiratory syndrome coronavirus 2 211-216 35337173-7 2022 The four compounds exhibited potent inhibitory activity ranging from 40.23 +- 0.09 to 44.90 +- 0.08 nM and 40.27 +- 0.17 to 44.83 +- 0.16 nM, respectively, when compared with chloroquine as a reference standard, which showed 45 +- 0.02 and 45 +- 0.06 nM against RdRp and spike glycoprotein, respectively. Chloroquine 175-186 ORF1a polyprotein;ORF1ab polyprotein Severe acute respiratory syndrome coronavirus 2 262-266 33842834-8 2021 The results of our analysis with some other suggested drugs indicated that chloroquine and hydroxychloroquine had high binding energy (low inhibitory effect) with all three proteins-Mpro, PLpro, and RdRp. Chloroquine 75-86 ORF1a polyprotein;ORF1ab polyprotein Severe acute respiratory syndrome coronavirus 2 188-193 33842834-8 2021 The results of our analysis with some other suggested drugs indicated that chloroquine and hydroxychloroquine had high binding energy (low inhibitory effect) with all three proteins-Mpro, PLpro, and RdRp. Chloroquine 75-86 ORF1a polyprotein;ORF1ab polyprotein Severe acute respiratory syndrome coronavirus 2 199-203 32824072-4 2020 Furthermore, CQ and HCQ also influenced the proofreading and capping of viral RNA in SARS-CoV-2, performed by nsp10/nsp14 and nsp10/nsp16. Chloroquine 13-15 ORF1a polyprotein;ORF1ab polyprotein Severe acute respiratory syndrome coronavirus 2 110-115 32824072-4 2020 Furthermore, CQ and HCQ also influenced the proofreading and capping of viral RNA in SARS-CoV-2, performed by nsp10/nsp14 and nsp10/nsp16. Chloroquine 13-15 ORF1a polyprotein;ORF1ab polyprotein Severe acute respiratory syndrome coronavirus 2 126-131