PMID-sentid Pub_year Sent_text comp_official_name comp_offsetprotein_name organism prot_offset 33761734-9 2021 Our GSEA analysis found that signaling pathways including glycolysis, p53 pathway, notch signaling, estrogen response late, cholesterol homeostasis, estrogen response early, mitotic spindle, and transforming growth factor beta signaling were enriched in the group with higher MMP28 expression.High expression of MMP28 could be identified in PC, which also served as an independent risk element for PC. gsea 4-8 tumor necrosis factor Homo sapiens 195-226 35091780-16 2022 GSEA of VCAM1 and LY96 revealed their relation to "inflammatory response", "TNF-alpha signalling via NF-kappaB", "complement" and "myogenesis". gsea 0-4 tumor necrosis factor Homo sapiens 76-85 34560894-8 2021 GSEA mapped axSpA upregulated genes to inflammatory responses and TNFalpha signaling and downregulated probe-sets to metabolic pathways. gsea 0-4 tumor necrosis factor Homo sapiens 66-74 34257653-16 2021 GSEA enrichment analysis showed the main enrichment being in KRAS activation, genes defining epithelial and mesenchymal transition (EMT), raised in response to the low oxygen level (hypoxia) gene and NF-kB in response to TNF. gsea 0-4 tumor necrosis factor Homo sapiens 221-224 34222242-9 2021 The results of GSEA suggested samples in the WASL knockdown group were enriched in glycolysis, TNF-alpha signaling via NFkB, mTORC1 signaling, and Wnt/beta-catenin signaling. gsea 15-19 tumor necrosis factor Homo sapiens 95-104 34148127-14 2021 GSEA revealed that epithelial-mesenchymal transition, IL-6/JAK/STAT3 signaling, the inflammatory response, and TNF-alpha signaling via the NFkappaB pathway were remarkably suppressed pathways in patients with BRAF mutations. gsea 0-4 tumor necrosis factor Homo sapiens 111-120 35091780-20 2022 GSEA of VCAM1 and LY96 revealed that they were mainly related to "inflammatory response", "TNF-alpha signalling via NF-kappaB", "complement" and "myogenesis". gsea 0-4 tumor necrosis factor Homo sapiens 91-100 35350243-15 2022 The GSEA showed that primary pathways were the P53 signaling pathway and tumor necrosis factor-mediated signaling pathway. gsea 4-8 tumor necrosis factor Homo sapiens 73-94 35571400-10 2022 Finally, GSEA indicated that WNT5A is implicated in the transforming growth factor beta (TGFbeta), Notch, and Hedgehog signaling pathways, which may be related to tumor immunity. gsea 9-13 tumor necrosis factor Homo sapiens 56-87 33363475-11 2020 The GSEA analysis result showed that the top three involved pathways were oxidative phosphorylation, TNFA signaling via NF-K B, and the inflammatory response. gsea 4-8 tumor necrosis factor Homo sapiens 101-105 35058712-11 2022 GSEA showed that the key genes were related to the transforming growth factor-beta (TGF-beta) and Wnt signaling pathways. gsea 0-4 tumor necrosis factor Homo sapiens 51-82 35140788-12 2022 GSEA determined several crucial pathways related with HNSCC, which are the p53 pathway, TNF-alpha signaling via NFKB, and hypoxia. gsea 0-4 tumor necrosis factor Homo sapiens 88-97 33891717-16 2021 GSEA showed that these genes are mainly related to "inflammatory response", "complement", "interferon-alpha response", "IL6/JAK/STAT3 signaling", "TGF-beta signaling", "IL2/STAT5 signaling" and "TNF-alpha signaling via NF-kappaB". gsea 0-4 tumor necrosis factor Homo sapiens 195-204 32863767-10 2020 GSEA indicated that the mitogen-activated protein kinase (MAPK) pathway, phosphatidylinositol-3 OH kinase/protein kinase B (PI3K-Akt) pathway, apoptotic pathway, and tumor necrosis factor (TNF) were involved in the initiation and development of NPC. gsea 0-4 tumor necrosis factor Homo sapiens 166-187 32863767-10 2020 GSEA indicated that the mitogen-activated protein kinase (MAPK) pathway, phosphatidylinositol-3 OH kinase/protein kinase B (PI3K-Akt) pathway, apoptotic pathway, and tumor necrosis factor (TNF) were involved in the initiation and development of NPC. gsea 0-4 tumor necrosis factor Homo sapiens 189-192 32974616-9 2020 The results of GSEA showed that genes were mainly enriched in cell cycle, cell proliferation, transforming growth factor beta (TGF-beta) signalling and cytokine-cytokine receptor interaction pathways. gsea 15-19 tumor necrosis factor Homo sapiens 94-125 30322808-13 2018 GSEA revealed that inflammatory response, TNFalpha signaling via NFkappaB, TGFbeta signaling, IL6 JAK STAT3 signaling and interferon Gamma response were significantly enriched in high PITX1 expression. gsea 0-4 tumor necrosis factor Homo sapiens 42-50 31729458-7 2019 Utilizing pre-ranked GSEA, we showed that primary tumors with Survivors were associated with anti-cancer signaling such as INF-alpha/-gamma response and TNF-alpha signaling, compared with all recurrence groups in pre-ranked GSEA. gsea 21-25 tumor necrosis factor Homo sapiens 153-162 22569225-12 2012 A GSEA suggested that the transforming growth factor beta, TNF, mitogen-activated protein kinase, and mammalian target of rapamycin pathways may be associated with treatment response. gsea 2-6 tumor necrosis factor Homo sapiens 59-62 22569225-10 2012 A GSEA identified the transforming growth factor beta, TNF, mitogen-activated protein kinase, and mammalian target of rapamycin pathways to have a potential influence on the treatment response. gsea 2-6 tumor necrosis factor Homo sapiens 55-58